iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007086

UUCD1 version

UUC-ArT-00605

Ensembl Protein ID

AT3G47160.1

UniProt Accession

Q9SD57; Q9SD57_ARATH

Genbank Protein ID

AAM20469.1; AAN72147.1; AAZ14069.1; AEE78249.1; CAB61962.1

Protein Name

At3g47160; RING/U-box superfamily protein; RNA binding-like protein; RNA-binding protein-like protein

Genbank Nucleotide ID

AY099618; BT002136; DQ086845; CP002686; AL133292

Gene Name

F13I12.210; At3g47160

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT3G47160	AT3G47160.2	AT3G47160.2
AT3G47160	AT3G47160.1	AT3G47160.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein Expression/Proteomics

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/RING	RING	16339806

Classification

Family	E-value	Score	Start	End
E3 activity/RING/RING	0.0056	18.1	147	185

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           C iC+e+  +  +vlp C H  + +C   w        ++ +CP Cr
   Q: 147  CGICMEMN-N-MVVLPnCTHSLCIKCYRDW------HGRSESCPFCR 185
           9***9965.4.566666*************......99999*****8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MAKVSFKDSL KALEADIQHA NTVALDYPRE KDGARVQMRL SYTPAAQFLL FLVQWTDCHL 60
AGTLGLLRVL IYMTYADGKT TMSVYERKTS IKDFYAVIFP SLLQLERGIT DLDDRKQKEV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGACAAGATT TTTATATCTC TCTCTCTAAC ATTAGCCGAA CAAAGGGCAA AATGGTCAAT 60
CTTGTAACCC ACTTCCGCGT CTTTTCTCGA TAAAGCTTCT TCGAGAATCG TAACTGAAGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001370--BIR_rpt
IPR001841--Znf_RING
IPR017907--Znf_RING_CS

PROSITE

PS00518--ZF_RING_1
PS50089--ZF_RING_2

SMART

SM00184--RING

Gene Ontology

GO:0008270--F:zinc ion binding

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000520	Aegilops tauschii	66.39	6.00e-96	342.00
IUUC-Aca-004541	Anolis carolinensis	42.86	9.00e-09	52.80
IUUC-Aly-006538	Arabidopsis lyrata	87.35	3.00e-124	436.00
IUUC-Ame-011210	Astyanax mexicanus	40.68	8.00e-09	53.10
IUUC-Bci-013854	Botrytis cinerea	36.67	9.00e-07	47.80
IUUC-Bdi-014103	Brachypodium distachyon	67.22	2.00e-86	310.00
IUUC-Bol-015363	Brassica oleracea	93.06	1.00e-139	487.00
IUUC-Bra-016994	Brassica rapa	91.43	1.00e-135	474.00
IUUC-Dre-027893	Danio rerio	42.86	7.00e-09	53.10
IUUC-Ete-032783	Echinops telfairi	42.86	8.00e-09	52.80
IUUC-Fal-037395	Ficedula albicollis	43.10	3.00e-09	54.30
IUUC-Gmo-039655	Gadus morhua	46.94	6.00e-09	53.50
IUUC-Gac-042012	Gasterosteus aculeatus	44.64	2.00e-09	55.50
IUUC-Hvu-047324	Hordeum vulgare	66.67	7.00e-89	319.00
IUUC-Lpe-050730	Leersia perrieri	68.75	1.00e-93	335.00
IUUC-Meu-056708	Macropus eugenii	46.43	4.00e-09	54.30
IUUC-Mtr-058038	Medicago truncatula	70.76	5.00e-93	333.00
IUUC-Mac-064729	Musa acuminata	67.63	2.00e-100	357.00
IUUC-Ont-072220	Oreochromis niloticus	42.86	3.00e-09	54.30
IUUC-Oba-075867	Oryza barthii	69.39	3.00e-94	337.00
IUUC-Obr-076083	Oryza brachyantha	68.33	9.00e-94	335.00
IUUC-Ogl-077580	Oryza glaberrima	70.25	4.00e-96	343.00
IUUC-Ogu-078162	Oryza glumaepatula	69.39	2.00e-94	337.00
IUUC-Oin-079986	Oryza indica	70.00	5.00e-95	339.00
IUUC-Olo-080306	Oryza longistaminata	70.25	6.00e-96	342.00
IUUC-Ome-081802	Oryza meridionalis	69.58	2.00e-95	341.00
IUUC-Oni-082456	Oryza nivara	70.25	3.00e-96	343.00
IUUC-Opu-084086	Oryza punctata	68.98	2.00e-94	337.00
IUUC-Oru-084301	Oryza rufipogon	70.25	3.00e-96	343.00
IUUC-Ola-086610	Oryzias latipes	44.64	5.00e-10	57.00
IUUC-Olu-087723	Ostreococcus lucimarinus	26.81	2.00e-08	53.90
IUUC-Pfo-097386	Poecilia formosa	44.64	1.00e-09	55.80
IUUC-Pop-099879	Populus trichocarpa	77.96	1.00e-107	381.00
IUUC-Sit-110346	Setaria italica	70.42	2.00e-94	338.00
IUUC-Sly-111299	Solanum lycopersicum	68.05	1.00e-87	315.00
IUUC-Stu-112699	Solanum tuberosum	68.46	2.00e-88	318.00
IUUC-Sbi-114022	Sorghum bicolor	69.83	3.00e-94	337.00
IUUC-Ssc-115234	Sus scrofa	42.86	1.00e-08	52.80
IUUC-Tgu-116861	Taeniopygia guttata	43.10	3.00e-09	54.30
IUUC-Tru-118629	Takifugu rubripes	42.86	2.00e-08	52.00
IUUC-Tni-120480	Tetraodon nigroviridis	42.86	1.00e-08	52.40
IUUC-Tca-121857	Theobroma cacao	83.11	6.00e-106	375.00
IUUC-Tae-123965	Triticum aestivum	66.39	6.00e-96	342.00
IUUC-Tur-126288	Triticum urartu	66.39	6.00e-96	342.00
IUUC-Vvi-130899	Vitis vinifera	66.80	5.00e-94	336.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence