iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Mmu-064127

Ensembl Protein ID

ENSMUSP00000150937.1

UniProt Accession

Q9D4V4; Q149X7; Q8C7I5; Q9CZG0; Q9D5U6; TAF1D_MOUSE

Genbank Protein ID

BAC34104.1; BAB28391.1; BAB29621.1; BAB30118.1; BAE38709.1; AAI10661.1; AAI17069.1; AAI17071.1

Protein Name

TATA box-binding protein-associated factor RNA polymerase I subunit D; TATA box-binding protein-associated factor 1D; Transcription initiation factor SL1/TIF-IB subunit D

Genbank Nucleotide ID

AK050165; AK012662; AK014920; AK016109; AK166329; BC110660; BC117068; BC117070

Gene Name

Taf1d; Josd3

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSMUSG00000031939.16	ENSMUST00000034415.5	ENSMUSP00000034415.5
ENSMUSG00000031939.16	ENSMUST00000214054.1	ENSMUSP00000150937.1
ENSMUSG00000031939.16	ENSMUST00000164079.8	ENSMUSP00000129141.1
ENSMUSG00000031939.16	ENSMUST00000215749.1	ENSMUSP00000150491.1
ENSMUSG00000031939.16	ENSMUST00000214316.1	ENSMUSP00000149380.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress	GXD
DNA & RNA Element
microRNA	TRANSFAC	RepTar	RAID2
Protein-protein Interaction
IID
Post-translational Modifications (PTMs)
dbPAF	PhosphositePlus	dbPTM
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
DUB/Other	52.65	1.00e-48	191.00	IUUC-Hsa-046930

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Mus musculus

Functional Description
(View)

Component of the transcription factor SL1/TIF-IB complex, which is involved in the assembly of the PIC (preinitiation complex) during RNA polymerase I-dependent transcription. The rate of PIC formation probably is primarily dependent on the rate of association of SL1/TIF-IB with the rDNA promoter. SL1/TIF-IB is involved in stabilization of nucleolar transcription factor 1/UBTF on rDNA. Formation of SL1/TIF-IB excludes the association of TBP with TFIID subunits (By similarity).

Protein Sequence
(Fasta)

MAQSEVNSVC VASDRAGDTG DQSDDSSDGS LFKTQCAPSP IQKQRHPTVK RVTLPASVET 60
DSSSDSSIEP RPLTLKAIFE RFKKKKRKKR KKRKYEPKLR PRGRPRGKPS GTRITRRSQI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCGAGATTTC GTCCTTGTCC TAGTCCGGCT GCTGGGCGCC GGGAGCGCTC TTTTCGACGC 60
GGCGGAAGAG GTAAGCGGTT GTTCACTGTG GCCGCTCAGG TCTGCTGCGG GCGACGGGGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0025--Alternative splicing
KW-0181--Complete proteome
KW-0238--DNA-binding
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0804--Transcription
KW-0805--Transcription regulation

Interpro

IPR027976--TAF1D

Pfam

PF15333--TAF1D

Gene Ontology

GO:0005815--C:microtubule organizing center
GO:0005654--C:nucleoplasm
GO:0005668--C:RNA polymerase transcription factor SL1 complex
GO:0003677--F:DNA binding
GO:0000183--P:chromatin silencing at rDNA
GO:0006361--P:transcription initiation from RNA polymerase I promoter

KEGG

mmu:75316

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001853	Ailuropoda melanoleuca	66.67	7.00e-53	200.00
IUUC-Apl-003575	Anas platyrhynchos	47.75	8.00e-27	114.00
IUUC-Aca-004568	Anolis carolinensis	48.46	8.00e-30	123.00
IUUC-Bta-013078	Bos taurus	61.60	5.00e-45	174.00
IUUC-Cja-019808	Callithrix jacchus	50.88	3.00e-47	181.00
IUUC-Cfa-020525	Canis familiaris	60.08	8.00e-47	180.00
IUUC-Cpo-021896	Cavia porcellus	67.67	1.00e-56	213.00
IUUC-Csa-024108	Chlorocebus sabaeus	54.55	4.00e-52	197.00
IUUC-Cho-024326	Choloepus hoffmanni	56.60	2.00e-48	185.00
IUUC-Dno-029104	Dasypus novemcinctus	61.32	6.00e-57	213.00
IUUC-Dor-030151	Dipodomys ordii	64.02	3.00e-54	204.00
IUUC-Ete-033189	Echinops telfairi	58.57	5.00e-57	214.00
IUUC-Eca-034238	Equus caballus	65.40	1.00e-59	223.00
IUUC-Fca-035711	Felis catus	64.41	2.00e-51	196.00
IUUC-Fal-037067	Ficedula albicollis	46.55	1.00e-24	105.00
IUUC-Gga-040782	Gallus gallus	46.88	6.00e-29	121.00
IUUC-Ggo-045155	Gorilla gorilla	52.30	2.00e-50	192.00
IUUC-Hsa-046930	Homo sapiens	52.65	2.00e-50	192.00
IUUC-Loc-052935	Lepisosteus oculatus	34.23	4.00e-07	50.10
IUUC-Laf-054040	Loxodonta africana	63.93	3.00e-60	224.00
IUUC-Mga-059429	Meleagris gallopavo	48.70	3.00e-29	122.00
IUUC-Mmr-061505	Microcebus murinus	55.76	2.00e-63	235.00
IUUC-Mdo-062193	Monodelphis domestica	49.32	2.00e-35	142.00
IUUC-Mpu-065682	Mustela putorius furo	62.05	8.00e-48	183.00
IUUC-Mlu-067425	Myotis lucifugus	68.58	3.00e-65	241.00
IUUC-Nle-069897	Nomascus leucogenys	52.65	1.00e-52	199.00
IUUC-Opr-071021	Ochotona princeps	57.02	3.00e-54	204.00
IUUC-Oan-072853	Ornithorhynchus anatinus	47.92	7.00e-33	136.00
IUUC-Ocu-074088	Oryctolagus cuniculus	55.13	1.00e-52	199.00
IUUC-Oga-089058	Otolemur garnettii	55.09	1.00e-53	202.00
IUUC-Oar-089404	Ovis aries	61.44	2.00e-45	175.00
IUUC-Ptr-091491	Pan troglodytes	53.19	1.00e-51	196.00
IUUC-Pan-092706	Papio anubis	54.55	5.00e-52	197.00
IUUC-Psi-093986	Pelodiscus sinensis	44.68	4.00e-28	118.00
IUUC-Pab-097567	Pongo abelii	52.30	3.00e-53	201.00
IUUC-Pva-103062	Pteropus vampyrus	68.63	4.00e-58	217.00
IUUC-Rno-105375	Rattus norvegicus	80.97	5.00e-101	360.00
IUUC-Sha-106880	Sarcophilus harrisii	46.58	7.00e-43	167.00
IUUC-Ssc-115335	Sus scrofa	51.52	2.00e-17	80.90
IUUC-Tgu-117094	Taeniopygia guttata	49.06	1.00e-24	105.00
IUUC-Tsy-119189	Tarsius syrichta	61.80	1.00e-48	186.00
IUUC-Tbe-128047	Tupaia belangeri	55.88	2.00e-57	215.00
IUUC-Ttr-128715	Tursiops truncatus	64.41	9.00e-65	239.00
IUUC-Vpa-130195	Vicugna pacos	58.96	8.00e-63	233.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence