iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Cme-027350

Ensembl Protein ID

CMK039CT

UniProt Accession

M1V895; M1V895_CYAM1

Genbank Protein ID

BAM80434.1

Protein Name

Photoregulatory zinc-finger protein COP1

Genbank Nucleotide ID

AP006493

Gene Name

CYME_CMK039C

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
CMK039C	CMK039CT	CMK039CT

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	7.10e-09	33.7	107	164
E3 activity/RING/RING	2.30e-07	29.3	111	148
E3 adaptor/Cullin RING/DCX/DWD	1.30e-30	102.3	701	739

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 4    eeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlr 62
           + + CpI ++l+r  v++ +G+t+  s+I +++++ ++ cPv++  lt +++ P  +++
   Q: 107  KSLECPICFDLFRAAVTTRCGHTFCFSCIMRHFRNHKS-CPVCGGFLTRDQIAPDSSVQ 164
           6789****************************877666.*************9988765 PP

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkwpglknssskefrCPlC 45
           C+iC++ f+   ++++CgH+f+++C+ +        +++ +CP+C
   Q: 111  CPICFDLFRA-AVTTRCGHTFCFSCIMRH------FRNHKSCPVC 148
           ********88.999************555......7********* PP

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlrtgvllk 37
           gH   ++ ++f  s++ +v++s D t+++WDlr++ +++
   Q: 701  GHRKAISYIRFfcSNREIVTASTDSTLRLWDLRSCQCER 739
           79999*****9987799*****************99986 PP

Organism

Cyanidioschyzon merolae

Protein Sequence
(Fasta)

MEGGSPAVGR AGSLADAPTS SDPAPTASAN DRSNTADPQQ PSTSSPLVNA ADPGAKNVAL 60
VEQTEPATPT ASTGNEQHRT TQPAPRQFSP AQRCNHNQVK RLGPALKSLE CPICFDLFRA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGAGGGCG GGTCTCCAGC TGTAGGGAGG GCGGGCTCTC TCGCGGACGC TCCCACGAGT 60
TCTGACCCGG CGCCTACCGC AAGCGCCAAC GACCGCAGCA ACACCGCTGA CCCGCAACAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0853--WD repeat
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00184--RING
SM00320--WD40

Gene Ontology

GO:0008270--F:zinc ion binding

KEGG

cme:CYME_CMK039C

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000885	Aegilops tauschii	34.24	2.00e-91	327.00
IUUC-Aml-001265	Ailuropoda melanoleuca	35.41	5.00e-80	289.00
IUUC-Atr-002460	Amborella trichopoda	35.11	2.00e-96	344.00
IUUC-Apl-003796	Anas platyrhynchos	37.61	3.00e-77	280.00
IUUC-Aca-005078	Anolis carolinensis	35.92	1.00e-81	295.00
IUUC-Aly-006014	Arabidopsis lyrata	44.54	5.00e-95	339.00
IUUC-Ath-007636	Arabidopsis thaliana	35.29	5.00e-95	339.00
IUUC-Ame-011176	Astyanax mexicanus	51.22	2.00e-33	134.00
IUUC-Bta-012595	Bos taurus	35.59	5.00e-81	293.00
IUUC-Bdi-014152	Brachypodium distachyon	34.88	2.00e-91	327.00
IUUC-Bol-016380	Brassica oleracea	45.18	6.00e-96	342.00
IUUC-Bra-017690	Brassica rapa	43.80	2.00e-90	324.00
IUUC-Cja-018926	Callithrix jacchus	36.59	4.00e-81	293.00
IUUC-Cfa-021088	Canis familiaris	35.45	2.00e-81	294.00
IUUC-Cpo-022442	Cavia porcellus	37.00	8.00e-75	272.00
IUUC-Cre-022579	Chlamydomonas reinhardtii	34.89	4.00e-36	142.00
IUUC-Csa-024119	Chlorocebus sabaeus	35.41	9.00e-80	288.00
IUUC-Cho-024883	Choloepus hoffmanni	31.34	3.00e-21	94.70
IUUC-Cin-025375	Ciona intestinalis	40.21	6.00e-76	276.00
IUUC-Dre-028453	Danio rerio	41.08	2.00e-81	294.00
IUUC-Dno-029887	Dasypus novemcinctus	35.67	2.00e-80	291.00
IUUC-Dor-031110	Dipodomys ordii	42.25	2.00e-74	270.00
IUUC-Ete-033016	Echinops telfairi	42.25	1.00e-73	268.00
IUUC-Eca-034403	Equus caballus	36.94	3.00e-76	276.00
IUUC-Eeu-034690	Erinaceus europaeus	46.88	5.00e-69	253.00
IUUC-Fca-036475	Felis catus	37.16	1.00e-76	278.00
IUUC-Fal-037189	Ficedula albicollis	35.98	7.00e-82	295.00
IUUC-Gmo-039245	Gadus morhua	41.32	9.00e-79	285.00
IUUC-Gga-040806	Gallus gallus	36.26	2.00e-81	294.00
IUUC-Gac-042177	Gasterosteus aculeatus	35.18	8.00e-83	299.00
IUUC-Gma-044206	Glycine max	44.35	2.00e-92	330.00
IUUC-Ggo-044430	Gorilla gorilla	34.93	9.00e-43	165.00
IUUC-Hsa-045853	Homo sapiens	35.59	5.00e-81	293.00
IUUC-Hvu-047750	Hordeum vulgare	37.66	3.00e-78	285.00
IUUC-Itr-048238	Ictidomys tridecemlineatus	44.40	6.00e-54	201.00
IUUC-Lch-050420	Latimeria chalumnae	34.67	2.00e-82	297.00
IUUC-Lpe-051219	Leersia perrieri	35.29	7.00e-89	319.00
IUUC-Loc-052728	Lepisosteus oculatus	42.07	1.00e-75	275.00
IUUC-Laf-053775	Loxodonta africana	35.41	7.00e-80	289.00
IUUC-Meu-056595	Macropus eugenii	36.91	1.00e-39	155.00
IUUC-Mtr-058555	Medicago truncatula	43.53	3.00e-91	327.00
IUUC-Mga-059646	Meleagris gallopavo	38.06	1.00e-76	278.00
IUUC-Mmr-060990	Microcebus murinus	35.41	7.00e-80	289.00
IUUC-Mdo-062287	Monodelphis domestica	35.78	3.00e-81	293.00
IUUC-Mmu-064097	Mus musculus	35.59	3.00e-81	293.00
IUUC-Mac-065240	Musa acuminata	44.35	2.00e-91	327.00
IUUC-Mpu-066612	Mustela putorius furo	37.16	2.00e-76	278.00
IUUC-Mlu-067967	Myotis lucifugus	34.70	2.00e-75	274.00
IUUC-Nle-069543	Nomascus leucogenys	35.59	3.00e-81	293.00
IUUC-Opr-070366	Ochotona princeps	41.06	2.00e-30	124.00
IUUC-Ont-071522	Oreochromis niloticus	40.97	1.00e-81	295.00
IUUC-Oan-073409	Ornithorhynchus anatinus	37.30	2.00e-75	274.00
IUUC-Ocu-073756	Oryctolagus cuniculus	36.94	1.00e-76	278.00
IUUC-Oba-075149	Oryza barthii	34.66	4.00e-91	327.00
IUUC-Obr-076563	Oryza brachyantha	34.14	1.00e-90	324.00
IUUC-Ogl-077701	Oryza glaberrima	34.66	2.00e-91	327.00
IUUC-Ogu-078383	Oryza glumaepatula	34.66	2.00e-91	327.00
IUUC-Oin-079965	Oryza indica	34.66	8.00e-92	328.00
IUUC-Olo-080639	Oryza longistaminata	34.49	2.00e-90	324.00
IUUC-Ome-081821	Oryza meridionalis	34.66	2.00e-91	328.00
IUUC-Oni-082622	Oryza nivara	34.66	2.00e-91	327.00
IUUC-Opu-083295	Oryza punctata	34.48	2.00e-91	327.00
IUUC-Oru-084661	Oryza rufipogon	34.66	2.00e-91	327.00
IUUC-Osa-085766	Oryza sativa	34.66	2.00e-91	327.00
IUUC-Ola-086727	Oryzias latipes	41.42	2.00e-81	294.00
IUUC-Olu-087702	Ostreococcus lucimarinus	39.88	4.00e-66	242.00
IUUC-Oga-088215	Otolemur garnettii	35.01	1.00e-76	278.00
IUUC-Oar-089880	Ovis aries	37.16	2.00e-76	277.00
IUUC-Ptr-090597	Pan troglodytes	35.59	5.00e-81	293.00
IUUC-Pan-091987	Papio anubis	35.59	5.00e-81	293.00
IUUC-Psi-094033	Pelodiscus sinensis	35.84	2.00e-82	297.00
IUUC-Pma-094587	Petromyzon marinus	35.20	1.00e-68	251.00
IUUC-Ppa-095999	Physcomitrella patens	46.09	9.00e-97	345.00
IUUC-Pfo-097388	Poecilia formosa	41.24	8.00e-82	295.00
IUUC-Pab-098029	Pongo abelii	35.59	4.00e-81	293.00
IUUC-Pop-099319	Populus trichocarpa	44.90	9.00e-94	335.00
IUUC-Pca-100846	Procavia capensis	41.62	2.00e-79	288.00
IUUC-Ppe-101250	Prunus persica	45.45	5.00e-92	329.00
IUUC-Pva-102407	Pteropus vampyrus	35.26	5.00e-78	283.00
IUUC-Rno-105312	Rattus norvegicus	35.59	9.00e-81	292.00
IUUC-Sha-106514	Sarcophilus harrisii	45.45	1.00e-75	274.00
IUUC-Smo-108999	Selaginella moellendorffii	37.36	1.00e-99	354.00
IUUC-Sit-110248	Setaria italica	35.58	3.00e-91	327.00
IUUC-Sly-110895	Solanum lycopersicum	45.36	6.00e-96	342.00
IUUC-Stu-112882	Solanum tuberosum	45.18	1.00e-94	338.00
IUUC-Sar-113230	Sorex araneus	35.08	2.00e-50	191.00
IUUC-Sbi-113962	Sorghum bicolor	40.97	8.00e-86	309.00
IUUC-Tgu-116471	Taeniopygia guttata	35.60	3.00e-80	290.00
IUUC-Tru-118231	Takifugu rubripes	41.51	9.00e-82	295.00
IUUC-Tsy-119415	Tarsius syrichta	35.40	8.00e-79	285.00
IUUC-Tni-120893	Tetraodon nigroviridis	41.51	1.00e-81	295.00
IUUC-Tca-121703	Theobroma cacao	41.03	5.00e-95	339.00
IUUC-Tae-125317	Triticum aestivum	34.92	6.00e-93	332.00
IUUC-Tur-126557	Triticum urartu	35.22	6.00e-93	332.00
IUUC-Tbe-127253	Tupaia belangeri	35.26	6.00e-53	199.00
IUUC-Ttr-129100	Tursiops truncatus	35.40	1.00e-73	268.00
IUUC-Vpa-130613	Vicugna pacos	31.33	2.00e-61	227.00
IUUC-Vvi-130880	Vitis vinifera	36.16	2.00e-97	347.00
IUUC-Xtr-132033	Xenopus tropicalis	34.65	5.00e-83	300.00
IUUC-Xma-133421	Xiphophorus maculatus	41.24	6.00e-82	296.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence