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Tag Content
UUCD2 ID IUUC-Pop-099116
UUCD1 version UUC-PoT-01393
Ensembl Protein ID POPTR_0015s09870.1
UniProt Accession B9IF20; B9IF20_POPTR
Genbank Protein ID EEF05779.1
Protein Name Transducin family protein
Genbank Nucleotide ID CM000351
Gene Name POPTRDRAFT_575266; POPTR_0015s09870g
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
POPTR_0015s09870 POPTR_0015s09870.1 POPTR_0015s09870.1
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 5.50e-29 100.1 348 386
UBD/Beta-Prp 8.30e-63 213.4 264 479
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf...sdtllvsGsdDgtikvWDlrtgvll 36
           gHtd+v++++    s++++vs+++D tikvWDl +g ++
   Q: 348  GHTDKVCAVDVskiSTRHVVSAAYDRTIKVWDLQKGFCT 386
           8*********9999889****************998775 PP
   

   UBD/Beta-Prp
   S: 8    hhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvl 98
           +h++ + ++ f  ++  l++g++d++ik wd+ tg+l ++l+g+ + v ++++ +d   ++ +s+ ++++vwd+ tg   htl+gh+d+v+
   Q: 264  AHEGGCASILFEYNSGKLISGGQDRSIKMWDTNTGSLSHTLYGCLGSVLDLSITHDNRSIIAASSSNNLYVWDVTTGRVRHTLTGHTDKVC 354
           67777888999888888999999*********************************9999999999************************* PP
   S: 99   slsfsp.sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsf 188
           ++++s+ s+ ++vs+  drti+vwdl++g c ++    h+   n+++++ dg+ + sG+ D+ +rlWd++tgkll +    h  +v+s+s+
   Q: 355  AVDVSKiSTRHVVSAAYDRTIKVWDLQKGFCTNT-IIFHS-NCNSLCFSMDGQTICSGHVDGNLRLWDIQTGKLLSEVAA-HSLAVTSISV 442
           ******888***********************94.33333.47888999999**************************87.********** PP
   S: 189  dsngkelvsgsldgtvklwdlqtgecvrtlnghtdnv 225
           ++ng  +++ ++d+  +l+d+++ e+  tl++  + v
   Q: 443  SRNGSVVLTSGRDNLHNLFDMRSLEVCGTLRATGNRV 479
           **********************999999999887766 PP
   
Organism Populus trichocarpa
Protein Sequence
(Fasta)
MQGVVGHDRQ RCSCSPSSHR KLHNPKEIDS TKHQLINLSI DMSQEEIGLE AIKQALKALK 60
KRHLLEEGAH APAFIALSRP IISQGSEWKE KAENLEVELQ QCYKAQSLLS NQLVVEVAES 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Pop-099116|E3,WD_repeat;UBD,Beta-Prp|Populus trichocarpa
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATGCAGGGAG TGGTCGGTCA TGACGTGAAT AATTGTCTCT GATCTTTAAT CTTTTATTAC 60
GGCTTGCTGT ATGCTCGGGT CGATTAAGTT TTATTTAATT TAGATTTAAA ATTAAATTAT 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Pop-099116|E3,WD_repeat;UBD,Beta-Prp|Populus trichocarpa
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat
Interpro

IPR013923--Autophagy-rel_prot_16
IPR020472--G-protein_beta_WD-40_rep
IPR027295--Quinoprotein_ADH-like_fam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF08614--ATG16
PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0000421--C:autophagosome membrane
GO:0000045--P:autophagosome assembly
KEGG pop:POPTR_0015s09870g
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000090 Aegilops tauschii 52.22 4.00e-144 504.00
IUUC-Aml-002242 Ailuropoda melanoleuca 31.21 1.00e-38 153.00
IUUC-Atr-003073 Amborella trichopoda 63.06 2.00e-158 551.00
IUUC-Apl-003384 Anas platyrhynchos 33.99 8.00e-47 181.00
IUUC-Aca-004962 Anolis carolinensis 33.33 1.00e-44 174.00
IUUC-Aly-005435 Arabidopsis lyrata 74.46 0.00e+00 790.00
IUUC-Ath-006948 Arabidopsis thaliana 73.48 0.00e+00 799.00
IUUC-Ame-010915 Astyanax mexicanus 33.99 8.00e-41 160.00
IUUC-Bta-012388 Bos taurus 31.02 9.00e-45 174.00
IUUC-Bdi-014231 Brachypodium distachyon 52.82 9.00e-153 533.00
IUUC-Bol-016174 Brassica oleracea 74.46 0.00e+00 784.00
IUUC-Bra-017165 Brassica rapa 73.37 0.00e+00 786.00
IUUC-Cel-018234 Caenorhabditis elegans 24.44 2.00e-27 116.00
IUUC-Cja-020002 Callithrix jacchus 30.92 2.00e-35 143.00
IUUC-Cfa-020484 Canis familiaris 32.01 1.00e-44 174.00
IUUC-Cpo-022156 Cavia porcellus 26.55 1.00e-45 177.00
IUUC-Csa-024019 Chlorocebus sabaeus 27.80 6.00e-50 191.00
IUUC-Cho-024311 Choloepus hoffmanni 35.10 7.00e-34 138.00
IUUC-Cin-025260 Ciona intestinalis 32.36 2.00e-36 146.00
IUUC-Dre-027702 Danio rerio 33.67 2.00e-46 179.00
IUUC-Dno-029728 Dasypus novemcinctus 31.35 2.00e-44 173.00
IUUC-Dor-030897 Dipodomys ordii 27.97 5.00e-41 161.00
IUUC-Dme-031595 Drosophila melanogaster 32.19 4.00e-38 152.00
IUUC-Ete-032969 Echinops telfairi 31.72 2.00e-43 169.00
IUUC-Eca-034214 Equus caballus 32.85 8.00e-42 164.00
IUUC-Eeu-034537 Erinaceus europaeus 30.36 4.00e-36 145.00
IUUC-Fca-036005 Felis catus 32.01 3.00e-44 172.00
IUUC-Fal-037593 Ficedula albicollis 33.88 5.00e-47 181.00
IUUC-Gmo-039042 Gadus morhua 25.15 1.00e-36 147.00
IUUC-Gga-040986 Gallus gallus 33.88 5.00e-48 185.00
IUUC-Gac-041351 Gasterosteus aculeatus 27.02 3.00e-51 196.00
IUUC-Gma-043265 Glycine max 81.89 0.00e+00 882.00
IUUC-Ggo-045427 Gorilla gorilla 31.79 3.00e-44 172.00
IUUC-Hsa-046632 Homo sapiens 31.79 2.00e-44 172.00
IUUC-Hvu-047655 Hordeum vulgare 52.84 1.00e-118 419.00
IUUC-Itr-048504 Ictidomys tridecemlineatus 27.11 6.00e-50 191.00
IUUC-Lpe-051254 Leersia perrieri 55.75 6.00e-156 543.00
IUUC-Loc-052610 Lepisosteus oculatus 33.22 3.00e-48 186.00
IUUC-Laf-053936 Loxodonta africana 31.00 6.00e-44 171.00
IUUC-Mcc-055504 Macaca mulatta 32.12 2.00e-44 173.00
IUUC-Meu-056516 Macropus eugenii 32.25 6.00e-45 174.00
IUUC-Mtr-058062 Medicago truncatula 77.91 0.00e+00 815.00
IUUC-Mla-059081 Melampsora laricipopulina 30.42 8.00e-29 121.00
IUUC-Mga-059777 Meleagris gallopavo 33.44 3.00e-45 176.00
IUUC-Mmr-061298 Microcebus murinus 31.79 8.00e-45 174.00
IUUC-Mdo-062969 Monodelphis domestica 32.25 4.00e-45 175.00
IUUC-Mmu-064076 Mus musculus 31.44 5.00e-45 175.00
IUUC-Mac-065161 Musa acuminata 66.88 0.00e+00 630.00
IUUC-Mpu-066196 Mustela putorius furo 31.68 2.00e-44 173.00
IUUC-Mlu-067651 Myotis lucifugus 32.57 3.00e-44 172.00
IUUC-Nle-069853 Nomascus leucogenys 30.79 8.00e-42 164.00
IUUC-Opr-071039 Ochotona princeps 30.69 3.00e-40 159.00
IUUC-Ont-072489 Oreochromis niloticus 33.55 4.00e-48 185.00
IUUC-Oan-072703 Ornithorhynchus anatinus 31.02 5.00e-45 175.00
IUUC-Ocu-074205 Oryctolagus cuniculus 31.79 3.00e-44 172.00
IUUC-Oba-075619 Oryza barthii 55.73 1.00e-158 552.00
IUUC-Obr-076632 Oryza brachyantha 54.56 9.00e-150 523.00
IUUC-Ogl-077671 Oryza glaberrima 55.95 1.00e-158 552.00
IUUC-Ogu-078052 Oryza glumaepatula 55.73 2.00e-158 551.00
IUUC-Oin-079611 Oryza indica 56.14 1.00e-156 546.00
IUUC-Olo-080408 Oryza longistaminata 56.14 4.00e-148 517.00
IUUC-Ome-081560 Oryza meridionalis 55.73 3.00e-158 551.00
IUUC-Oni-082145 Oryza nivara 55.73 1.00e-158 552.00
IUUC-Opu-083918 Oryza punctata 56.16 1.00e-147 516.00
IUUC-Oru-084858 Oryza rufipogon 55.92 7.00e-157 546.00
IUUC-Osa-086277 Oryza sativa 55.92 9.00e-157 546.00
IUUC-Ola-086964 Oryzias latipes 36.08 8.00e-43 166.00
IUUC-Olu-087622 Ostreococcus lucimarinus 34.69 6.00e-68 250.00
IUUC-Oga-088765 Otolemur garnettii 27.42 2.00e-50 193.00
IUUC-Oar-090196 Ovis aries 31.45 1.00e-42 167.00
IUUC-Ptr-091676 Pan troglodytes 31.79 2.00e-44 172.00
IUUC-Pan-092068 Papio anubis 32.12 2.00e-44 173.00
IUUC-Psi-093367 Pelodiscus sinensis 33.66 1.00e-49 190.00
IUUC-Ppa-095699 Physcomitrella patens 52.20 2.00e-147 515.00
IUUC-Pfo-096067 Poecilia formosa 27.22 9.00e-48 184.00
IUUC-Pab-098111 Pongo abelii 31.79 4.00e-44 172.00
IUUC-Pca-100680 Procavia capensis 33.63 1.00e-34 140.00
IUUC-Ppe-101790 Prunus persica 83.30 0.00e+00 890.00
IUUC-Pva-102871 Pteropus vampyrus 32.01 8.00e-46 177.00
IUUC-Pgr-103597 Puccinia graminis 30.29 3.00e-28 120.00
IUUC-Rno-106088 Rattus norvegicus 31.10 5.00e-45 175.00
IUUC-Sha-106984 Sarcophilus harrisii 32.69 2.00e-45 176.00
IUUC-Smo-108983 Selaginella moellendorffii 49.49 4.00e-139 487.00
IUUC-Sit-110828 Setaria italica 56.97 4.00e-159 553.00
IUUC-Sly-111009 Solanum lycopersicum 77.56 0.00e+00 773.00
IUUC-Stu-112370 Solanum tuberosum 77.21 0.00e+00 839.00
IUUC-Sar-113109 Sorex araneus 33.49 3.00e-26 112.00
IUUC-Sbi-114819 Sorghum bicolor 55.94 6.00e-156 543.00
IUUC-Ssc-116241 Sus scrofa 26.26 5.00e-45 175.00
IUUC-Tgu-116576 Taeniopygia guttata 26.80 4.00e-49 189.00
IUUC-Tru-118336 Takifugu rubripes 29.28 2.00e-35 143.00
IUUC-Tsy-119006 Tarsius syrichta 32.12 2.00e-44 173.00
IUUC-Tni-120300 Tetraodon nigroviridis 32.57 9.00e-46 177.00
IUUC-Tca-121002 Theobroma cacao 83.27 0.00e+00 895.00
IUUC-Tae-123139 Triticum aestivum 52.02 3.00e-144 504.00
IUUC-Tur-126463 Triticum urartu 52.02 1.00e-143 503.00
IUUC-Tbe-127631 Tupaia belangeri 31.79 3.00e-44 172.00
IUUC-Ttr-129005 Tursiops truncatus 34.93 2.00e-37 150.00
IUUC-Vvi-130878 Vitis vinifera 81.18 0.00e+00 854.00
IUUC-Xtr-132798 Xenopus tropicalis 30.07 7.00e-36 144.00
IUUC-Xma-133264 Xiphophorus maculatus 27.27 2.00e-48 186.00
Created Date 25-Jun-2017

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