iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Bta-012913

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

DAAA02018497

Gene Name

RNF4

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSBTAG00000027453.4	ENSBTAT00000039422.4	ENSBTAP00000039216.4

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	1.80e-08	34.9	128	173

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf......kdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C+iC++ +       +  +++ CgH+f+ +Cl       +s +++ +CP+Cr
   Q: 128  CPICMDGYseivqnGRLIVSTECGHIFCSQCL------RDSLKNANTCPTCR 173
           ********55553322255788*********9......4559*********8 PP

Organism

Bos taurus

Protein Sequence
(Fasta)

MSTRKRRGGT VNSRQAQKRT RESTSPPEMA LEAEPVELVE SAGDEIVDLT CESLEPVVVD 60
LTHNDSVVVV GERRRPRRNG RRLRQDHADS CVVSSDEEEL ARDKDVYVTT HSPRSAATGF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGAAGTGGGT CGGTGCTGAG GCGGCGGCGG CGGCGTCGTC TGGTGGAGGT CTTCTCTGAA 60
GCTGCTCGCG GAGGTGCTTC CCTCGCTCGA GTGCGTCAAC CGCCGTGCCC GCTGAGTCGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0005737--C:cytoplasm
GO:0016605--C:PML body
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0045944--P:positive regulation of transcription from RNA polymerase II promoter
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0016567--P:protein ubiquitination
GO:0090234--P:regulation of kinetochore assembly
GO:0090169--P:regulation of spindle assembly
GO:0046685--P:response to arsenic-containing substance

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000620	Aegilops tauschii	40.98	7.00e-11	60.80
IUUC-Aml-002206	Ailuropoda melanoleuca	88.77	2.00e-80	291.00
IUUC-Atr-002771	Amborella trichopoda	33.33	1.00e-09	56.20
IUUC-Apl-004120	Anas platyrhynchos	69.39	3.00e-70	257.00
IUUC-Aca-004236	Anolis carolinensis	61.05	4.00e-59	220.00
IUUC-Ame-011555	Astyanax mexicanus	52.23	1.00e-37	149.00
IUUC-Bdi-014655	Brachypodium distachyon	44.26	5.00e-11	61.20
IUUC-Bol-016418	Brassica oleracea	39.34	5.00e-09	55.10
IUUC-Bra-016890	Brassica rapa	38.60	9.00e-08	50.10
IUUC-Cja-019151	Callithrix jacchus	85.34	2.00e-78	285.00
IUUC-Cfa-020868	Canis familiaris	86.32	1.00e-77	281.00
IUUC-Cpo-022249	Cavia porcellus	83.42	9.00e-71	259.00
IUUC-Csa-024125	Chlorocebus sabaeus	85.26	7.00e-80	289.00
IUUC-Cin-025749	Ciona intestinalis	33.33	8.00e-14	70.10
IUUC-Csv-026318	Ciona savignyi	37.31	3.00e-13	68.20
IUUC-Dre-028145	Danio rerio	47.67	2.00e-32	131.00
IUUC-Dno-029605	Dasypus novemcinctus	85.26	4.00e-85	306.00
IUUC-Dor-030898	Dipodomys ordii	86.32	2.00e-83	301.00
IUUC-Dme-032177	Drosophila melanogaster	40.68	1.00e-10	60.50
IUUC-Ete-032694	Echinops telfairi	80.21	1.00e-67	248.00
IUUC-Eca-033443	Equus caballus	89.47	2.00e-82	297.00
IUUC-Eeu-034603	Erinaceus europaeus	87.38	1.00e-50	191.00
IUUC-Fca-035507	Felis catus	87.70	6.00e-77	279.00
IUUC-Fal-037382	Ficedula albicollis	68.37	2.00e-64	238.00
IUUC-Gmo-038960	Gadus morhua	69.39	6.00e-19	85.90
IUUC-Gga-040493	Gallus gallus	65.98	5.00e-66	243.00
IUUC-Gac-042194	Gasterosteus aculeatus	51.05	2.00e-36	145.00
IUUC-Ggo-044726	Gorilla gorilla	86.84	1.00e-80	291.00
IUUC-Hsa-046212	Homo sapiens	86.84	1.00e-80	291.00
IUUC-Hvu-047337	Hordeum vulgare	34.67	5.00e-11	61.20
IUUC-Itr-047892	Ictidomys tridecemlineatus	86.10	4.00e-77	280.00
IUUC-Lpe-050920	Leersia perrieri	39.34	1.00e-10	59.70
IUUC-Loc-051907	Lepisosteus oculatus	45.51	8.00e-35	139.00
IUUC-Laf-054145	Loxodonta africana	85.56	3.00e-74	270.00
IUUC-Mcc-055689	Macaca mulatta	85.79	1.00e-79	288.00
IUUC-Meu-056654	Macropus eugenii	45.99	5.00e-38	150.00
IUUC-Mtr-058314	Medicago truncatula	45.45	2.00e-10	58.50
IUUC-Mla-058874	Melampsora laricipopulina	37.74	1.00e-04	41.60
IUUC-Mga-059303	Meleagris gallopavo	68.37	7.00e-70	256.00
IUUC-Mmr-061355	Microcebus murinus	87.37	2.00e-80	291.00
IUUC-Mdo-062968	Monodelphis domestica	64.55	4.00e-64	237.00
IUUC-Mmu-064421	Mus musculus	87.70	2.00e-86	311.00
IUUC-Mac-064624	Musa acuminata	34.07	2.00e-11	62.80
IUUC-Mpu-066522	Mustela putorius furo	88.24	5.00e-80	290.00
IUUC-Mlu-067065	Myotis lucifugus	84.49	4.00e-76	276.00
IUUC-Nle-069198	Nomascus leucogenys	86.32	1.00e-79	288.00
IUUC-Opr-071141	Ochotona princeps	84.49	4.00e-82	296.00
IUUC-Oan-073341	Ornithorhynchus anatinus	65.31	4.00e-35	140.00
IUUC-Ocu-073787	Oryctolagus cuniculus	87.17	9.00e-88	315.00
IUUC-Oba-075460	Oryza barthii	41.94	2.00e-11	62.40
IUUC-Obr-076349	Oryza brachyantha	39.34	4.00e-10	58.50
IUUC-Ogl-077094	Oryza glaberrima	41.94	2.00e-11	62.40
IUUC-Ogu-078677	Oryza glumaepatula	41.94	2.00e-11	62.80
IUUC-Oin-079992	Oryza indica	41.94	2.00e-11	62.40
IUUC-Olo-080257	Oryza longistaminata	43.55	1.00e-11	63.20
IUUC-Ome-081943	Oryza meridionalis	41.94	2.00e-11	63.20
IUUC-Oni-082671	Oryza nivara	41.94	2.00e-11	62.40
IUUC-Opu-083644	Oryza punctata	41.94	3.00e-11	62.40
IUUC-Oru-084650	Oryza rufipogon	41.94	2.00e-11	62.40
IUUC-Osa-086110	Oryza sativa	41.94	2.00e-11	62.40
IUUC-Ola-086970	Oryzias latipes	42.71	5.00e-35	140.00
IUUC-Olu-087634	Ostreococcus lucimarinus	35.59	4.00e-10	57.40
IUUC-Oga-088242	Otolemur garnettii	86.63	2.00e-86	311.00
IUUC-Oar-089469	Ovis aries	94.12	2.00e-92	331.00
IUUC-Ptr-091254	Pan troglodytes	81.05	2.00e-73	268.00
IUUC-Pan-092776	Papio anubis	85.79	1.00e-79	288.00
IUUC-Psi-093929	Pelodiscus sinensis	67.51	2.00e-67	248.00
IUUC-Pma-094118	Petromyzon marinus	53.85	3.00e-20	89.40
IUUC-Ppa-095567	Physcomitrella patens	41.89	1.00e-11	63.20
IUUC-Pfo-097412	Poecilia formosa	47.13	3.00e-34	137.00
IUUC-Pab-098424	Pongo abelii	86.32	3.00e-80	290.00
IUUC-Pop-099483	Populus trichocarpa	38.71	4.00e-09	54.30
IUUC-Pca-100463	Procavia capensis	81.56	1.00e-45	175.00
IUUC-Pva-102594	Pteropus vampyrus	87.23	1.00e-58	218.00
IUUC-Rno-105460	Rattus norvegicus	82.01	5.00e-76	276.00
IUUC-Sha-107487	Sarcophilus harrisii	66.67	3.00e-65	240.00
IUUC-Smo-108908	Selaginella moellendorffii	37.10	6.00e-08	50.40
IUUC-Sit-109959	Setaria italica	36.07	9.00e-05	40.80
IUUC-Stu-112694	Solanum tuberosum	38.67	1.00e-09	56.20
IUUC-Sar-113601	Sorex araneus	84.49	4.00e-74	270.00
IUUC-Sbi-114398	Sorghum bicolor	37.70	4.00e-05	41.60
IUUC-Ssc-115911	Sus scrofa	88.95	5.00e-81	293.00
IUUC-Tgu-117264	Taeniopygia guttata	68.25	1.00e-61	229.00
IUUC-Tru-117663	Takifugu rubripes	50.32	2.00e-37	148.00
IUUC-Tsy-118883	Tarsius syrichta	83.11	6.00e-62	229.00
IUUC-Tae-122783	Triticum aestivum	28.22	3.00e-07	48.10
IUUC-Tur-126408	Triticum urartu	41.67	6.00e-11	60.80
IUUC-Ttr-128950	Tursiops truncatus	67.02	1.00e-65	242.00
IUUC-Vvi-130833	Vitis vinifera	41.94	2.00e-10	58.90
IUUC-Xtr-132879	Xenopus tropicalis	58.33	5.00e-39	153.00
IUUC-Xma-133319	Xiphophorus maculatus	45.45	2.00e-31	127.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence