iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Gga-040493

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

AADN04000201

Gene Name

RNF4

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSGALG00000015668.5	ENSGALT00000025265.4	ENSGALP00000025219.5

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	5.30e-08	33.6	135	180

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf......kdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C+iC++ +       +  +++ CgHvf+ +Cl       +s +++ +CP+Cr
   Q: 135  CPICMDGYseivqsGRLIVSTKCGHVFCSQCL------RDSLRNANSCPTCR 180
           ********44444433255688*********9......4559*********8 PP

Organism

Gallus gallus

Protein Sequence
(Fasta)

MSTTPRKRRG GSANSRQSQK RSRLIASTTE MASEGEPIEL EESAGEEVVD LTCESSDPVV 60
VDLTHNDSIV ITENLQRRRN LRLRGQRQSD SCVLSSDDED ETRDNDVYVT DKVSRELGPL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGCCATTCCC CGCGCCGCCG AGCGGCGCTG CAGCCAATGG CGGAAGGGCG GGGGCGAGCG 60
CCGTTCTACG CCGTTGCCGG GCCGGCGGCG GAAGGTGAGC GCGGCGGGTC GGGGCTGCGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00518--ZF_RING_1
PS50089--ZF_RING_2

SMART

SM00184--RING

Gene Ontology

GO:0005737--C:cytoplasm
GO:0016605--C:PML body
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0045944--P:positive regulation of transcription from RNA polymerase II promoter
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0016567--P:protein ubiquitination
GO:0090234--P:regulation of kinetochore assembly
GO:0090169--P:regulation of spindle assembly
GO:0046685--P:response to arsenic-containing substance

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000620	Aegilops tauschii	42.62	6.00e-12	64.30
IUUC-Aml-002206	Ailuropoda melanoleuca	69.84	4.00e-62	230.00
IUUC-Atr-002771	Amborella trichopoda	38.57	5.00e-11	60.80
IUUC-Apl-004120	Anas platyrhynchos	88.78	4.00e-93	333.00
IUUC-Aca-004236	Anolis carolinensis	68.39	4.00e-68	250.00
IUUC-Aly-005728	Arabidopsis lyrata	39.34	2.00e-10	58.20
IUUC-Ame-011555	Astyanax mexicanus	52.17	2.00e-39	154.00
IUUC-Bta-012913	Bos taurus	64.43	4.00e-64	236.00
IUUC-Bdi-014655	Brachypodium distachyon	45.90	7.00e-12	63.90
IUUC-Bol-016418	Brassica oleracea	42.62	2.00e-10	59.70
IUUC-Bra-016890	Brassica rapa	38.60	1.00e-08	52.40
IUUC-Cja-019151	Callithrix jacchus	67.86	1.00e-60	224.00
IUUC-Cfa-020868	Canis familiaris	67.19	5.00e-61	226.00
IUUC-Cpo-022249	Cavia porcellus	65.61	1.00e-56	212.00
IUUC-Csa-024125	Chlorocebus sabaeus	67.69	2.00e-60	224.00
IUUC-Cin-025749	Ciona intestinalis	44.26	6.00e-15	73.90
IUUC-Csv-026318	Ciona savignyi	42.62	3.00e-14	71.20
IUUC-Dre-028145	Danio rerio	42.00	4.00e-35	140.00
IUUC-Dno-029605	Dasypus novemcinctus	68.56	1.00e-66	245.00
IUUC-Dor-030898	Dipodomys ordii	67.36	5.00e-67	246.00
IUUC-Dme-032177	Drosophila melanogaster	52.54	1.00e-13	70.10
IUUC-Ete-032694	Echinops telfairi	66.14	5.00e-54	202.00
IUUC-Eca-033443	Equus caballus	69.59	2.00e-62	231.00
IUUC-Eeu-034603	Erinaceus europaeus	71.43	4.00e-41	159.00
IUUC-Fca-035507	Felis catus	69.84	1.00e-60	224.00
IUUC-Fal-037382	Ficedula albicollis	84.18	2.00e-82	297.00
IUUC-Gmo-038960	Gadus morhua	77.55	1.00e-20	91.30
IUUC-Gac-042194	Gasterosteus aculeatus	50.34	1.00e-36	145.00
IUUC-Gma-042666	Glycine max	39.34	3.00e-09	54.70
IUUC-Ggo-044726	Gorilla gorilla	68.21	2.00e-60	224.00
IUUC-Hsa-046212	Homo sapiens	68.21	2.00e-60	224.00
IUUC-Hvu-047337	Hordeum vulgare	34.83	2.00e-12	65.90
IUUC-Itr-047892	Ictidomys tridecemlineatus	69.47	1.00e-60	225.00
IUUC-Lpe-050920	Leersia perrieri	40.98	1.00e-11	62.80
IUUC-Loc-051907	Lepisosteus oculatus	50.91	3.00e-35	140.00
IUUC-Laf-054145	Loxodonta africana	68.25	3.00e-59	220.00
IUUC-Mcc-055689	Macaca mulatta	68.21	3.00e-60	223.00
IUUC-Meu-056654	Macropus eugenii	49.47	2.00e-44	171.00
IUUC-Mtr-058314	Medicago truncatula	43.55	2.00e-11	61.60
IUUC-Mga-059303	Meleagris gallopavo	89.80	4.00e-95	339.00
IUUC-Mmr-061355	Microcebus murinus	67.69	3.00e-60	224.00
IUUC-Mdo-062968	Monodelphis domestica	73.30	2.00e-73	267.00
IUUC-Mmu-064421	Mus musculus	66.14	9.00e-67	245.00
IUUC-Mac-064573	Musa acuminata	40.98	8.00e-12	63.90
IUUC-Mpu-066522	Mustela putorius furo	69.84	3.00e-62	230.00
IUUC-Mlu-067065	Myotis lucifugus	68.78	4.00e-61	227.00
IUUC-Nle-069198	Nomascus leucogenys	67.01	4.00e-60	223.00
IUUC-Opr-071141	Ochotona princeps	67.55	7.00e-66	242.00
IUUC-Oan-073341	Ornithorhynchus anatinus	68.92	5.00e-40	155.00
IUUC-Ocu-073787	Oryctolagus cuniculus	68.59	6.00e-69	252.00
IUUC-Oba-075460	Oryza barthii	43.55	3.00e-12	65.50
IUUC-Obr-076349	Oryza brachyantha	40.98	3.00e-11	62.00
IUUC-Ogl-077094	Oryza glaberrima	36.78	9.00e-13	66.60
IUUC-Ogu-078677	Oryza glumaepatula	42.47	2.00e-12	65.50
IUUC-Oin-079992	Oryza indica	36.78	9.00e-13	66.60
IUUC-Olo-080257	Oryza longistaminata	45.16	2.00e-12	65.90
IUUC-Ome-081943	Oryza meridionalis	39.08	8.00e-13	67.40
IUUC-Oni-082671	Oryza nivara	43.55	3.00e-12	65.50
IUUC-Opu-083644	Oryza punctata	42.47	3.00e-12	65.50
IUUC-Oru-084650	Oryza rufipogon	43.55	3.00e-12	65.50
IUUC-Osa-086110	Oryza sativa	36.78	9.00e-13	66.60
IUUC-Ola-086970	Oryzias latipes	42.64	2.00e-34	138.00
IUUC-Olu-087634	Ostreococcus lucimarinus	38.98	5.00e-11	60.10
IUUC-Oga-088242	Otolemur garnettii	67.72	4.00e-67	246.00
IUUC-Oar-089469	Ovis aries	66.67	2.00e-67	247.00
IUUC-Ptr-091254	Pan troglodytes	64.62	2.00e-55	207.00
IUUC-Pan-092919	Papio anubis	68.23	2.00e-60	224.00
IUUC-Psi-093929	Pelodiscus sinensis	83.25	5.00e-82	296.00
IUUC-Pma-094118	Petromyzon marinus	49.43	2.00e-23	99.40
IUUC-Ppa-095718	Physcomitrella patens	34.91	5.00e-13	67.80
IUUC-Pfo-097412	Poecilia formosa	49.08	6.00e-34	136.00
IUUC-Pab-098424	Pongo abelii	68.21	2.00e-60	224.00
IUUC-Pca-100463	Procavia capensis	61.38	2.00e-32	131.00
IUUC-Ppe-101755	Prunus persica	40.32	3.00e-10	57.40
IUUC-Pva-102594	Pteropus vampyrus	63.19	1.00e-40	158.00
IUUC-Rno-105460	Rattus norvegicus	64.92	5.00e-59	219.00
IUUC-Sha-107487	Sarcophilus harrisii	75.26	8.00e-76	275.00
IUUC-Smo-108908	Selaginella moellendorffii	38.71	2.00e-08	52.00
IUUC-Sit-109959	Setaria italica	37.70	2.00e-05	42.70
IUUC-Stu-112694	Solanum tuberosum	40.62	5.00e-10	57.40
IUUC-Sar-113601	Sorex araneus	68.78	3.00e-62	230.00
IUUC-Sbi-114398	Sorghum bicolor	40.98	4.00e-06	44.70
IUUC-Ssc-115911	Sus scrofa	68.04	5.00e-62	229.00
IUUC-Tgu-117264	Taeniopygia guttata	88.95	9.00e-84	301.00
IUUC-Tru-117663	Takifugu rubripes	50.90	9.00e-39	152.00
IUUC-Tsy-118883	Tarsius syrichta	64.24	3.00e-47	180.00
IUUC-Tae-124035	Triticum aestivum	33.66	4.00e-12	65.10
IUUC-Tur-126408	Triticum urartu	42.62	5.00e-12	64.70
IUUC-Ttr-128950	Tursiops truncatus	55.44	2.00e-54	205.00
IUUC-Vvi-130833	Vitis vinifera	41.94	7.00e-11	60.50
IUUC-Xtr-132879	Xenopus tropicalis	61.94	2.00e-42	164.00
IUUC-Xma-133319	Xiphophorus maculatus	49.66	1.00e-31	128.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence