iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ssc-115403

Ensembl Protein ID

ENSSSCP00000010794.2

UniProt Accession

F1RK61; F1RK61_PIG

Genbank Protein ID

ENSSSCP00000010794

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CU468637

Gene Name

UFD1L

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSSSCG00000010121.2	ENSSSCT00000011082.2	ENSSSCP00000010794.2

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
DUB/Other	99.02	3.00e-176	615.00	IUUC-Hsa-046680
UBD/Other/Other	99.02	3.00e-176	615.00	IUUC-Hsa-046680
UBD/Other/Other	37.35	1.00e-51	198.00	IUUC-Sce-106174

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Sus scrofa

Protein Sequence
(Fasta)

MFSFNMFDHP IPRVFQNRFS TQYRCFSVSM LAGPNDRSDV EKGGKIIMPP SALDQLSRLN 60
ITYPMLFKLT NKNSDRMTHC GVLEFVADEG ICYLPHWMMQ NLLLEEGGLV QVESVNLQVA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTTACTTCCG CCCGAGTCTT GGATGGCCGC GGCAGACGCC GGAGATCTGC GTGCATTCTG 60
GGTAACTTAA GCGGAAGGGG CGTTAATCCC ATCAAACTCT TCTGGAGGGG GCACTGTCAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR004854--UFD1

Pfam

PF03152--UFD1

Gene Ontology

GO:0005634--C:nucleus
GO:0036501--C:UFD1-NPL4 complex
GO:0034098--C:VCP-NPL4-UFD1 AAA ATPase complex
GO:0071712--P:ER-associated misfolded protein catabolic process
GO:0039536--P:negative regulation of RIG-I signaling pathway
GO:0032480--P:negative regulation of type I interferon production
GO:0030970--P:retrograde protein transport, ER to cytosol
GO:0006511--P:ubiquitin-dependent protein catabolic process

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000441	Aegilops tauschii	51.80	4.00e-66	244.00
IUUC-Aml-001398	Ailuropoda melanoleuca	99.02	3.00e-177	613.00
IUUC-Atr-002449	Amborella trichopoda	47.91	3.00e-55	207.00
IUUC-Apl-004065	Anas platyrhynchos	92.75	2.00e-142	497.00
IUUC-Aca-004973	Anolis carolinensis	93.16	6.00e-173	599.00
IUUC-Aly-005501	Arabidopsis lyrata	52.14	5.00e-68	250.00
IUUC-Ath-007324	Arabidopsis thaliana	53.25	1.00e-67	249.00
IUUC-Ago-007918	Ashbya gossypii	37.27	2.00e-53	202.00
IUUC-Acl-008362	Aspergillus clavatus	42.64	1.00e-67	249.00
IUUC-Afl-008690	Aspergillus flavus	54.17	1.00e-64	239.00
IUUC-Afu-008787	Aspergillus fumigatus	42.94	1.00e-65	243.00
IUUC-Ani-009385	Aspergillus nidulans	56.57	4.00e-57	214.00
IUUC-Ang-009709	Aspergillus niger	56.22	5.00e-64	237.00
IUUC-Aor-010240	Aspergillus oryzae	54.17	1.00e-64	239.00
IUUC-Ate-010551	Aspergillus terreus	56.31	1.00e-64	239.00
IUUC-Ame-011417	Astyanax mexicanus	88.96	3.00e-159	553.00
IUUC-Bgr-011986	Blumeria graminis	56.25	7.00e-62	230.00
IUUC-Bta-012559	Bos taurus	97.36	2.00e-128	450.00
IUUC-Bci-013767	Botrytis cinerea	56.08	4.00e-58	218.00
IUUC-Bdi-014336	Brachypodium distachyon	52.44	7.00e-66	243.00
IUUC-Bol-015824	Brassica oleracea	44.41	6.00e-67	247.00
IUUC-Bra-016732	Brassica rapa	44.09	7.00e-67	246.00
IUUC-Cel-018590	Caenorhabditis elegans	40.47	2.00e-49	189.00
IUUC-Cja-019487	Callithrix jacchus	98.70	3.00e-177	613.00
IUUC-Cfa-020497	Canis familiaris	99.35	2.00e-178	617.00
IUUC-Cpo-022150	Cavia porcellus	98.69	2.00e-176	610.00
IUUC-Cre-023007	Chlamydomonas reinhardtii	50.66	3.00e-58	217.00
IUUC-Csa-023602	Chlorocebus sabaeus	99.02	9.00e-178	615.00
IUUC-Cin-025594	Ciona intestinalis	57.72	4.00e-93	333.00
IUUC-Csv-026040	Ciona savignyi	55.59	1.00e-94	338.00
IUUC-Cgl-026460	Colletotrichum gloeosporioides	45.59	3.00e-52	198.00
IUUC-Cne-026990	Cryptococcus neoformans	42.49	2.00e-39	156.00
IUUC-Cme-027323	Cyanidioschyzon merolae	33.22	9.00e-43	167.00
IUUC-Dre-027987	Danio rerio	86.69	6.00e-154	536.00
IUUC-Dor-030294	Dipodomys ordii	97.39	1.00e-174	605.00
IUUC-Dse-031411	Dothistroma septosporum	37.94	6.00e-57	214.00
IUUC-Dme-031798	Drosophila melanogaster	56.01	7.00e-93	333.00
IUUC-Ete-032432	Echinops telfairi	97.72	2.00e-175	607.00
IUUC-Eca-034427	Equus caballus	99.02	9.00e-178	615.00
IUUC-Eeu-034917	Erinaceus europaeus	70.68	3.00e-111	394.00
IUUC-Fca-035380	Felis catus	99.35	2.00e-178	617.00
IUUC-Fal-037659	Ficedula albicollis	93.38	4.00e-167	579.00
IUUC-Fox-038062	Fusarium oxysporum	44.90	4.00e-21	93.60
IUUC-Fso-038111	Fusarium solani	35.38	2.00e-52	199.00
IUUC-Gmo-039298	Gadus morhua	86.73	2.00e-146	511.00
IUUC-Ggr-039771	Gaeumannomyces graminis	51.03	2.00e-56	212.00
IUUC-Gga-040313	Gallus gallus	94.14	5.00e-171	592.00
IUUC-Gac-042009	Gasterosteus aculeatus	85.48	3.00e-147	513.00
IUUC-Gma-043844	Glycine max	52.28	2.00e-67	249.00
IUUC-Ggo-044639	Gorilla gorilla	88.34	5.00e-172	596.00
IUUC-Hsa-046680	Homo sapiens	99.02	9.00e-178	615.00
IUUC-Hvu-047860	Hordeum vulgare	53.33	3.00e-66	244.00
IUUC-Itr-047987	Ictidomys tridecemlineatus	99.02	3.00e-177	613.00
IUUC-Kpa-049136	Komagataella pastoris	36.57	7.00e-56	210.00
IUUC-Lch-050607	Latimeria chalumnae	88.08	3.00e-155	540.00
IUUC-Lpe-050726	Leersia perrieri	50.23	2.00e-61	229.00
IUUC-Loc-051848	Lepisosteus oculatus	88.67	4.00e-160	556.00
IUUC-Lma-053187	Leptosphaeria maculans	41.64	5.00e-65	241.00
IUUC-Laf-053569	Loxodonta africana	97.09	2.00e-173	601.00
IUUC-Mcc-055275	Macaca mulatta	98.70	5.00e-177	612.00
IUUC-Mor-056967	Magnaporthe oryzae	37.35	3.00e-57	214.00
IUUC-Mpo-057399	Magnaporthe poae	51.55	1.00e-56	213.00
IUUC-Mtr-058353	Medicago truncatula	50.87	3.00e-65	241.00
IUUC-Mla-058830	Melampsora laricipopulina	44.56	1.00e-42	167.00
IUUC-Mga-059803	Meleagris gallopavo	93.13	1.00e-142	498.00
IUUC-Mvi-060456	Microbotryum violaceum	46.81	2.00e-45	176.00
IUUC-Mmr-060573	Microcebus murinus	98.70	2.00e-177	613.00
IUUC-Mdo-062831	Monodelphis domestica	96.09	2.00e-173	600.00
IUUC-Mmu-064302	Mus musculus	98.05	3.00e-176	610.00
IUUC-Mac-064745	Musa acuminata	51.72	1.00e-65	243.00
IUUC-Mpu-065922	Mustela putorius furo	98.70	1.00e-177	614.00
IUUC-Mlu-068236	Myotis lucifugus	97.73	2.00e-175	607.00
IUUC-Nfi-068417	Neosartorya fischeri	42.94	1.00e-65	243.00
IUUC-Ncr-068747	Neurospora crassa	41.13	2.00e-54	205.00
IUUC-Nle-069948	Nomascus leucogenys	88.37	4.00e-173	600.00
IUUC-Opr-070919	Ochotona princeps	83.06	4.00e-139	486.00
IUUC-Ont-071467	Oreochromis niloticus	85.76	2.00e-151	528.00
IUUC-Oan-073436	Ornithorhynchus anatinus	76.36	2.00e-69	253.00
IUUC-Ocu-074427	Oryctolagus cuniculus	98.05	9.00e-168	582.00
IUUC-Oba-075440	Oryza barthii	51.06	1.00e-66	246.00
IUUC-Obr-076275	Oryza brachyantha	51.61	8.00e-60	223.00
IUUC-Ogl-077237	Oryza glaberrima	51.06	1.00e-66	246.00
IUUC-Ogu-078934	Oryza glumaepatula	51.06	1.00e-66	246.00
IUUC-Oin-079475	Oryza indica	51.49	4.00e-67	248.00
IUUC-Olo-080285	Oryza longistaminata	59.64	7.00e-57	213.00
IUUC-Ome-081887	Oryza meridionalis	51.06	1.00e-66	246.00
IUUC-Oni-082064	Oryza nivara	51.49	5.00e-67	247.00
IUUC-Opu-083610	Oryza punctata	50.64	3.00e-66	244.00
IUUC-Oru-084911	Oryza rufipogon	44.09	3.00e-67	248.00
IUUC-Osa-085366	Oryza sativa	51.06	1.00e-66	246.00
IUUC-Ola-086846	Oryzias latipes	75.57	3.00e-138	484.00
IUUC-Olu-087879	Ostreococcus lucimarinus	45.82	1.00e-56	213.00
IUUC-Oga-089017	Otolemur garnettii	97.73	3.00e-174	603.00
IUUC-Oar-089970	Ovis aries	94.44	2.00e-167	581.00
IUUC-Ptr-091147	Pan troglodytes	89.64	5.00e-162	563.00
IUUC-Pan-091757	Papio anubis	91.56	3.00e-158	550.00
IUUC-Psi-093931	Pelodiscus sinensis	94.46	2.00e-171	593.00
IUUC-Pno-094775	Phaeosphaeria nodorum	48.62	4.00e-59	221.00
IUUC-Ppa-095156	Physcomitrella patens	51.34	1.00e-63	236.00
IUUC-Pfo-097295	Poecilia formosa	84.89	8.00e-151	525.00
IUUC-Pab-098537	Pongo abelii	99.02	9.00e-178	615.00
IUUC-Pop-099436	Populus trichocarpa	50.00	2.00e-67	248.00
IUUC-Pca-100631	Procavia capensis	85.80	6.00e-165	572.00
IUUC-Ppe-101259	Prunus persica	50.86	8.00e-67	246.00
IUUC-Pva-102679	Pteropus vampyrus	90.00	7.00e-159	552.00
IUUC-Pgr-103475	Puccinia graminis	45.59	6.00e-45	174.00
IUUC-Ptt-104012	Puccinia triticina	38.73	2.00e-32	132.00
IUUC-Pte-104071	Pyrenophora teres	51.43	8.00e-62	230.00
IUUC-Pyt-104501	Pyrenophora triticirepentis	51.43	8.00e-62	230.00
IUUC-Rno-104858	Rattus norvegicus	98.05	3.00e-176	610.00
IUUC-Sce-106174	Saccharomyces cerevisiae	37.80	3.00e-54	205.00
IUUC-Sha-107075	Sarcophilus harrisii	96.73	2.00e-174	603.00
IUUC-Sja-107663	Schizosaccharomyces japonicus	44.00	2.00e-60	226.00
IUUC-Spo-108259	Schizosaccharomyces pombe	44.87	6.00e-53	200.00
IUUC-Ssl-108473	Sclerotinia sclerotiorum	39.35	3.00e-51	194.00
IUUC-Smo-109290	Selaginella moellendorffii	53.28	7.00e-66	243.00
IUUC-Sit-109992	Setaria italica	50.64	4.00e-65	241.00
IUUC-Sly-110858	Solanum lycopersicum	52.02	2.00e-63	235.00
IUUC-Stu-112129	Solanum tuberosum	51.13	1.00e-63	236.00
IUUC-Sar-113061	Sorex araneus	98.05	1.00e-175	608.00
IUUC-Sbi-114882	Sorghum bicolor	44.90	2.00e-66	245.00
IUUC-Sre-115104	Sporisorium reilianum	47.12	2.00e-44	172.00
IUUC-Tgu-117013	Taeniopygia guttata	94.44	5.00e-171	593.00
IUUC-Tru-118307	Takifugu rubripes	86.36	3.00e-148	516.00
IUUC-Tsy-119309	Tarsius syrichta	87.32	7.00e-68	250.00
IUUC-Tni-120209	Tetraodon nigroviridis	85.76	3.00e-146	510.00
IUUC-Tca-121421	Theobroma cacao	51.30	4.00e-67	247.00
IUUC-Tre-122235	Trichoderma reesei	45.88	1.00e-51	196.00
IUUC-Tvi-122421	Trichoderma virens	45.81	2.00e-52	199.00
IUUC-Tae-124587	Triticum aestivum	51.80	3.00e-66	244.00
IUUC-Tur-126353	Triticum urartu	37.50	3.00e-25	109.00
IUUC-Tme-126918	Tuber melanosporum	53.65	5.00e-59	221.00
IUUC-Ttr-129286	Tursiops truncatus	89.32	1.00e-160	558.00
IUUC-Uma-129404	Ustilago maydis	48.17	1.00e-45	177.00
IUUC-Vda-129746	Verticillium dahliae	45.97	2.00e-53	202.00
IUUC-Vpa-130648	Vicugna pacos	100.00	2.00e-24	105.00
IUUC-Vvi-131301	Vitis vinifera	51.74	3.00e-66	244.00
IUUC-Xtr-132583	Xenopus tropicalis	90.23	7.00e-163	565.00
IUUC-Xma-133129	Xiphophorus maculatus	85.21	6.00e-151	526.00
IUUC-Yli-134515	Yarrowia lipolytica	46.43	3.00e-51	195.00
IUUC-Zma-135266	Zea mays	44.16	3.00e-66	244.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence