iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
iRefIndex	Mentha
Post-translational Modifications (PTMs)
dbPPT	dbPTM	UniProt
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.60e-07	31.2	159	182

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 9    laf.sd.tllvsGsdDgtikvWDl 30
           laf ++   l++G+ Dgt++v+ +
   Q: 159  LAFnPEgSVLAAGAEDGTLRVFKW 182
           7888777889***********997 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Required for the formation or budding of transport vesicles from the ER.

Protein Sequence
(Fasta)

MANQSTETNQ PSNMQTYGVP IYAADWIPEV DVRSKIIMDP EKSEDDDESS SSSSSSRSCI 60
VLSGGGGEGR SGISNVILIC RVDLNTNSLS EQPLGRLVVG SDLPYRMAVH PREGGLICAL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGGGACTTGG CATTGAGCTC GAGAGACAGA CACGGAGGAT GGCGAATCAG AGTACAGAGA 60
CGAATCAACC GTCGAATATG CAGACTTACG GTGTACCGAT TTACGCCGCC GACTGGATTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0007--Acetylation
KW-0181--Complete proteome
KW-0256--Endoplasmic reticulum
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0597--Phosphoprotein
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0677--Repeat
KW-0735--Signal-anchor
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR011047--Quinoprotein_ADH-like_supfam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005783--C:endoplasmic reticulum
GO:0005794--C:Golgi apparatus
GO:0030176--C:integral component of endoplasmic reticulum membrane
GO:0016020--C:membrane
GO:0005886--C:plasma membrane
GO:0005774--C:vacuolar membrane
GO:0005096--F:GTPase activator activity
GO:0051020--F:GTPase binding
GO:0005090--F:Sar guanyl-nucleotide exchange factor activity
GO:0006888--P:ER to Golgi vesicle-mediated transport
GO:0009306--P:protein secretion
GO:0003400--P:regulation of COPII vesicle coating

KEGG

ath:AT2G01470

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005479	Arabidopsis lyrata	91.69	0.00e+00	643.00
IUUC-Bta-012386	Bos taurus	26.97	3.00e-13	69.30
IUUC-Bdi-014110	Brachypodium distachyon	42.74	5.00e-68	250.00
IUUC-Bra-016660	Brassica rapa	75.63	3.00e-148	517.00
IUUC-Cin-025431	Ciona intestinalis	28.21	3.00e-12	65.50
IUUC-Ggo-044648	Gorilla gorilla	27.00	3.00e-12	65.90
IUUC-Hsa-046003	Homo sapiens	27.00	3.00e-12	65.90
IUUC-Lpe-051586	Leersia perrieri	43.48	1.00e-69	256.00
IUUC-Mvi-060443	Microbotryum violaceum	33.02	1.00e-09	57.40
IUUC-Mac-064955	Musa acuminata	47.58	2.00e-83	302.00
IUUC-Opr-070864	Ochotona princeps	26.86	1.00e-12	67.00
IUUC-Ont-072204	Oreochromis niloticus	27.27	2.00e-13	69.70
IUUC-Ocu-074217	Oryctolagus cuniculus	27.31	6.00e-12	64.70
IUUC-Obr-076826	Oryza brachyantha	44.76	5.00e-72	264.00
IUUC-Ogl-077927	Oryza glaberrima	46.57	2.00e-66	245.00
IUUC-Ogu-078241	Oryza glumaepatula	46.57	4.00e-66	244.00
IUUC-Oin-080217	Oryza indica	48.51	1.00e-66	246.00
IUUC-Olo-081060	Oryza longistaminata	46.69	1.00e-54	206.00
IUUC-Oni-082827	Oryza nivara	48.51	1.00e-66	246.00
IUUC-Opu-083159	Oryza punctata	42.63	1.00e-69	256.00
IUUC-Oru-085039	Oryza rufipogon	48.51	1.00e-66	246.00
IUUC-Osa-086258	Oryza sativa	48.51	1.00e-66	246.00
IUUC-Ola-087223	Oryzias latipes	25.95	1.00e-14	73.90
IUUC-Oar-090435	Ovis aries	26.97	2.00e-13	69.30
IUUC-Ptr-090869	Pan troglodytes	25.93	1.00e-07	50.40
IUUC-Ppa-095329	Physcomitrella patens	38.46	3.00e-48	185.00
IUUC-Pfo-097488	Poecilia formosa	25.74	8.00e-12	64.30
IUUC-Pop-099618	Populus trichocarpa	51.40	4.00e-99	353.00
IUUC-Ppe-101864	Prunus persica	55.72	1.00e-86	312.00
IUUC-Smo-109265	Selaginella moellendorffii	38.81	2.00e-48	185.00
IUUC-Sly-111551	Solanum lycopersicum	52.08	9.00e-82	296.00
IUUC-Stu-112264	Solanum tuberosum	51.93	1.00e-80	292.00
IUUC-Sre-115183	Sporisorium reilianum	19.12	1.00e-08	53.90
IUUC-Tru-117866	Takifugu rubripes	27.08	2.00e-13	69.30
IUUC-Tca-121083	Theobroma cacao	55.04	1.00e-104	372.00
IUUC-Tae-124218	Triticum aestivum	47.49	6.00e-69	253.00
IUUC-Ttr-128585	Tursiops truncatus	27.04	1.00e-13	70.10
IUUC-Uma-129598	Ustilago maydis	18.67	4.00e-11	62.40
IUUC-Vvi-131024	Vitis vinifera	51.67	5.00e-97	347.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence