iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bra-017390

Ensembl Protein ID

Bra005990.1-P

UniProt Accession

M4CP52; M4CP52_BRARP

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Bra005990	Bra005990.1	Bra005990.1-P

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	7.60e-38	127.9	141	179
UBD/Beta-Prp	2.80e-59	201.7	14	253

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gHt +v+ l+f +d + +vsG+ D+++kvWDl+ g+ll+
   Q: 141  GHTRGVNVLRFtPDgRWVVSGGEDNVVKVWDLTAGKLLH 179
           8***********99999******************9987 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsf 102
           +h++ ++c+k+  ++++ l+tg++d+++ +w + +++++ sl+gh+++v +v+f+ ++ + + g+  +tik+wdl+  k+v+tl+gh ++  s++f
   Q: 14   AHSAAVNCLKIgRKSSRKLVTGGEDHKVNLWAIGKPNTILSLQGHTSGVDSVTFDASEGLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVNF 109
           7899999****9999********************************************************************************* PP
   S: 103  spsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsg 198
           +p g++++sGs+d  +++wd++++ c++ t +gh++ vn++++ pdg+ +vsG+ D++v++Wdl  gkll+++++ h+++++sl+f++  + l++g
   Q: 110  HPFGEFFASGSRDTNLKIWDIRKKGCIH-TYKGHTRGVNVLRFTPDGRWVVSGGEDNVVKVWDLTAGKLLHEFKS-HEGQIQSLDFHPHEFLLATG 203
           ****************************.*********************************************9.******************** PP
   S: 199  sldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriW 249
           s d+tvk+wdl+t e + +    t+ v+++ f p+++ +++g  ++s++i+
   Q: 204  SADKTVKFWDLETFELIGSGGTETTGVRCLTFNPDGKSVLCGL-HESLKIF 253
           **************************************99995.6677764 PP

Organism

Brassica rapa

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MTTKRAYKLQ EFVAHSAAVN CLKIGRKSSR KLVTGGEDHK VNLWAIGKPN TILSLQGHTS 60
GVDSVTFDAS EGLVAAGAAS GTIKLWDLEE AKIVRTLTGH RSNCISVNFH PFGEFFASGS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGACCACCA AGCGCGCTTA CAAGCTCCGT ATCCTTGTTT ATGTTTCTTT AATTACTCAA 60
ATTTAGAAGC TTCTTTGTGT TGTGAATCAT TTGATTAACT AAAGTGCCGT GCTTGGATCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR027295--Quinoprotein_ADH-like_fam
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002187	Ailuropoda melanoleuca	50.17	5.00e-97	348.00
IUUC-Atr-002899	Amborella trichopoda	53.58	0.00e+00	821.00
IUUC-Apl-003305	Anas platyrhynchos	50.51	2.00e-98	353.00
IUUC-Aca-004635	Anolis carolinensis	50.54	6.00e-90	324.00
IUUC-Aly-006226	Arabidopsis lyrata	84.43	0.00e+00	1365.00
IUUC-Ath-007323	Arabidopsis thaliana	84.41	0.00e+00	1399.00
IUUC-Bgr-011972	Blumeria graminis	32.34	5.00e-29	122.00
IUUC-Bta-012527	Bos taurus	50.83	6.00e-100	357.00
IUUC-Bdi-014652	Brachypodium distachyon	62.73	1.00e-177	616.00
IUUC-Bol-015242	Brassica oleracea	93.04	0.00e+00	1483.00
IUUC-Cja-019706	Callithrix jacchus	50.83	1.00e-99	356.00
IUUC-Cfa-020139	Canis familiaris	42.58	1.00e-89	323.00
IUUC-Cpo-021710	Cavia porcellus	50.50	5.00e-100	358.00
IUUC-Csa-023546	Chlorocebus sabaeus	50.86	2.00e-96	346.00
IUUC-Csv-025962	Ciona savignyi	47.08	2.00e-82	298.00
IUUC-Dre-028215	Danio rerio	51.13	8.00e-99	354.00
IUUC-Dno-029314	Dasypus novemcinctus	51.16	9.00e-100	357.00
IUUC-Dor-030482	Dipodomys ordii	50.83	2.00e-100	359.00
IUUC-Dme-032188	Drosophila melanogaster	37.09	1.00e-55	211.00
IUUC-Eca-034143	Equus caballus	50.50	5.00e-97	348.00
IUUC-Fca-035924	Felis catus	51.16	3.00e-100	359.00
IUUC-Fal-037387	Ficedula albicollis	51.83	1.00e-102	366.00
IUUC-Gmo-038692	Gadus morhua	49.84	2.00e-100	359.00
IUUC-Gga-040597	Gallus gallus	50.50	2.00e-100	359.00
IUUC-Gac-042004	Gasterosteus aculeatus	50.79	2.00e-96	346.00
IUUC-Gma-044134	Glycine max	55.82	0.00e+00	862.00
IUUC-Ggo-044761	Gorilla gorilla	50.83	1.00e-99	357.00
IUUC-Hsa-045698	Homo sapiens	50.83	6.00e-100	358.00
IUUC-Hvu-047649	Hordeum vulgare	62.73	4.00e-177	615.00
IUUC-Itr-048697	Ictidomys tridecemlineatus	50.83	3.00e-100	359.00
IUUC-Lch-049674	Latimeria chalumnae	52.53	3.00e-103	369.00
IUUC-Lpe-051554	Leersia perrieri	61.16	0.00e+00	630.00
IUUC-Loc-052623	Lepisosteus oculatus	50.97	2.00e-97	350.00
IUUC-Laf-054587	Loxodonta africana	50.83	4.00e-100	358.00
IUUC-Mcc-055851	Macaca mulatta	50.83	1.00e-99	357.00
IUUC-Meu-056704	Macropus eugenii	51.83	5.00e-101	361.00
IUUC-Mtr-058053	Medicago truncatula	56.51	0.00e+00	850.00
IUUC-Mga-059608	Meleagris gallopavo	45.45	7.00e-98	351.00
IUUC-Mmr-061154	Microcebus murinus	50.83	7.00e-100	357.00
IUUC-Mdo-062365	Monodelphis domestica	51.50	7.00e-100	357.00
IUUC-Mmu-063754	Mus musculus	50.32	2.00e-100	359.00
IUUC-Mpu-066245	Mustela putorius furo	51.50	2.00e-100	359.00
IUUC-Mlu-067692	Myotis lucifugus	49.68	5.00e-99	355.00
IUUC-Nle-070051	Nomascus leucogenys	50.50	1.00e-98	353.00
IUUC-Opr-070855	Ochotona princeps	50.83	5.00e-100	358.00
IUUC-Ont-071883	Oreochromis niloticus	50.49	3.00e-99	355.00
IUUC-Oan-073293	Ornithorhynchus anatinus	51.94	4.00e-97	348.00
IUUC-Ocu-074644	Oryctolagus cuniculus	50.83	2.00e-100	359.00
IUUC-Oba-075448	Oryza barthii	82.50	1.00e-168	586.00
IUUC-Obr-076385	Oryza brachyantha	64.29	6.00e-180	624.00
IUUC-Ogl-077427	Oryza glaberrima	77.19	4.00e-179	621.00
IUUC-Ogu-079022	Oryza glumaepatula	71.12	1.00e-147	516.00
IUUC-Oni-082640	Oryza nivara	82.50	1.00e-168	586.00
IUUC-Opu-083748	Oryza punctata	81.07	9.00e-171	593.00
IUUC-Oru-084609	Oryza rufipogon	82.50	1.00e-168	586.00
IUUC-Osa-086267	Oryza sativa	71.74	2.00e-148	519.00
IUUC-Ola-087483	Oryzias latipes	47.67	2.00e-90	326.00
IUUC-Oga-087964	Otolemur garnettii	50.83	6.00e-100	357.00
IUUC-Oar-089483	Ovis aries	50.50	4.00e-98	352.00
IUUC-Ptr-091387	Pan troglodytes	50.83	6.00e-100	358.00
IUUC-Pan-092623	Papio anubis	50.83	1.00e-99	357.00
IUUC-Psi-093830	Pelodiscus sinensis	51.24	2.00e-95	343.00
IUUC-Pfo-096755	Poecilia formosa	50.32	3.00e-99	355.00
IUUC-Pab-097564	Pongo abelii	50.83	3.00e-99	355.00
IUUC-Pop-099149	Populus trichocarpa	59.95	0.00e+00	982.00
IUUC-Pca-100357	Procavia capensis	56.31	2.00e-74	273.00
IUUC-Ppe-101237	Prunus persica	59.95	0.00e+00	939.00
IUUC-Pva-102397	Pteropus vampyrus	46.84	8.00e-88	317.00
IUUC-Rno-105349	Rattus norvegicus	50.32	2.00e-100	359.00
IUUC-Sly-111307	Solanum lycopersicum	55.00	0.00e+00	843.00
IUUC-Sar-112953	Sorex araneus	43.86	7.00e-56	211.00
IUUC-Tgu-117461	Taeniopygia guttata	51.83	4.00e-103	368.00
IUUC-Tru-117865	Takifugu rubripes	46.75	2.00e-92	333.00
IUUC-Tsy-119036	Tarsius syrichta	57.72	4.00e-39	155.00
IUUC-Tni-120903	Tetraodon nigroviridis	46.30	9.00e-91	327.00
IUUC-Tae-125263	Triticum aestivum	59.71	3.00e-178	618.00
IUUC-Tur-126411	Triticum urartu	54.12	9.00e-147	514.00
IUUC-Tme-127141	Tuber melanosporum	29.81	4.00e-29	122.00
IUUC-Ttr-128172	Tursiops truncatus	50.83	3.00e-100	358.00
IUUC-Vvi-131489	Vitis vinifera	58.97	0.00e+00	937.00
IUUC-Xtr-132915	Xenopus tropicalis	49.68	2.00e-96	346.00
IUUC-Xma-134133	Xiphophorus maculatus	49.37	1.00e-96	347.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence