iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
RAID2
Protein-protein Interaction
IID	HINT
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UFD/UBX	1.20e-14	55.0	173	246

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UFD/UBX

   S: 4    eqatlqiRlpdGkrlvrkFpssttleqiyqfve.yllvessdpFeLvspfPrrtlkpeehmstlqeagLvpsgsll 78
           + +++qi+l++G+r v++F+ s+++++i +f+e y+ +++s pF L +++P   + +e+   tl+ea+L +  +++
   Q: 173  PITRIQIWLANGERTVQRFNISHRVSHIKDFIEkYQGTQRSPPFALATALPFLRFLDETL--TLEEADLQNAVIIQ 246
           579*********************************************************..*********99886 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MKEVDNLDSI KEEWVCETGP PDNQPLNDNP QKDCEYFVDS LFEEAEKAGA KCLSPTEQKK 60
QVDVNIKLWK NGFTVNDDFR SYSDGASQQF LNSIKKGELP SELQGVFDKD EVDVKVEDKK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAAAGAAG TAGATAATCT TGACAGTATA AAAGAAGAAT GGTAAGTTAA CCCAAGCAAT 60
GATGTGTAAA TGCCTTGGCT ATTTTCTTTC TGGTTTTCTT GCGTGTCACT GACAGAAATA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR012989--SEP_domain
IPR029071--Ubiquitin-rel_dom
IPR001012--UBX_dom

PROSITE

PS51399--SEP
PS50033--UBX

Pfam

PF08059--SEP
PF00789--UBX

SMART

SM00553--SEP

Gene Ontology

GO:0005801--C:cis-Golgi network
GO:0005829--C:cytosol
GO:0005783--C:endoplasmic reticulum
GO:0005634--C:nucleus
GO:0043130--F:ubiquitin binding
GO:0007030--P:Golgi organization
GO:0061025--P:membrane fusion
GO:0031468--P:nuclear envelope reassembly
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0010468--P:regulation of gene expression
GO:0042176--P:regulation of protein catabolic process
GO:0031396--P:regulation of protein ubiquitination

KEGG

rno:685859

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002393	Ailuropoda melanoleuca	86.99	1.00e-107	382.00
IUUC-Apl-004089	Anas platyrhynchos	63.71	6.00e-81	293.00
IUUC-Aca-005094	Anolis carolinensis	57.53	3.00e-74	271.00
IUUC-Ame-011164	Astyanax mexicanus	41.96	2.00e-36	145.00
IUUC-Bta-012790	Bos taurus	87.98	4.00e-115	407.00
IUUC-Cja-019967	Callithrix jacchus	86.43	6.00e-112	396.00
IUUC-Cfa-020180	Canis familiaris	86.82	3.00e-115	407.00
IUUC-Cpo-021719	Cavia porcellus	81.18	5.00e-108	383.00
IUUC-Csa-023840	Chlorocebus sabaeus	85.66	9.00e-115	405.00
IUUC-Cho-024683	Choloepus hoffmanni	85.27	7.00e-113	399.00
IUUC-Dre-028501	Danio rerio	48.20	4.00e-51	194.00
IUUC-Dno-029129	Dasypus novemcinctus	82.95	2.00e-120	424.00
IUUC-Ete-033198	Echinops telfairi	77.16	2.00e-68	251.00
IUUC-Eca-033335	Equus caballus	87.21	3.00e-114	404.00
IUUC-Fca-036141	Felis catus	87.60	1.00e-112	399.00
IUUC-Fal-037574	Ficedula albicollis	64.50	6.00e-79	286.00
IUUC-Gmo-039656	Gadus morhua	40.08	3.00e-38	151.00
IUUC-Gga-040681	Gallus gallus	62.55	1.00e-80	292.00
IUUC-Gac-042408	Gasterosteus aculeatus	45.05	3.00e-45	174.00
IUUC-Ggo-045649	Gorilla gorilla	85.66	3.00e-112	397.00
IUUC-Hsa-045755	Homo sapiens	85.66	2.00e-112	397.00
IUUC-Lch-050482	Latimeria chalumnae	51.38	3.00e-62	231.00
IUUC-Loc-052184	Lepisosteus oculatus	43.36	9.00e-47	180.00
IUUC-Laf-053715	Loxodonta africana	86.82	9.00e-113	399.00
IUUC-Mga-060206	Meleagris gallopavo	61.39	2.00e-79	288.00
IUUC-Mmr-061401	Microcebus murinus	87.98	8.00e-115	405.00
IUUC-Mdo-061891	Monodelphis domestica	59.27	5.00e-81	293.00
IUUC-Mmu-063822	Mus musculus	95.74	6.00e-129	452.00
IUUC-Mpu-066583	Mustela putorius furo	84.71	6.00e-108	383.00
IUUC-Mlu-067179	Myotis lucifugus	83.33	2.00e-103	368.00
IUUC-Nle-069125	Nomascus leucogenys	85.66	2.00e-112	397.00
IUUC-Opr-070527	Ochotona princeps	67.05	3.00e-85	308.00
IUUC-Ont-072648	Oreochromis niloticus	44.19	3.00e-47	181.00
IUUC-Oan-072825	Ornithorhynchus anatinus	68.58	5.00e-77	280.00
IUUC-Ocu-073897	Oryctolagus cuniculus	86.82	1.00e-113	402.00
IUUC-Ola-086332	Oryzias latipes	33.85	5.00e-32	130.00
IUUC-Oga-088217	Otolemur garnettii	84.50	7.00e-109	386.00
IUUC-Oar-090372	Ovis aries	86.43	6.00e-113	399.00
IUUC-Ptr-091011	Pan troglodytes	85.27	9.00e-108	382.00
IUUC-Pan-092177	Papio anubis	86.43	1.00e-115	409.00
IUUC-Psi-093793	Pelodiscus sinensis	61.54	9.00e-82	296.00
IUUC-Pfo-096059	Poecilia formosa	45.05	2.00e-44	171.00
IUUC-Pab-098103	Pongo abelii	81.92	3.00e-104	370.00
IUUC-Pca-101031	Procavia capensis	65.57	1.00e-78	285.00
IUUC-Pva-102671	Pteropus vampyrus	72.83	3.00e-83	301.00
IUUC-Sha-106530	Sarcophilus harrisii	44.06	9.00e-44	169.00
IUUC-Sar-113329	Sorex araneus	62.02	1.00e-58	219.00
IUUC-Ssc-115898	Sus scrofa	86.48	9.00e-115	405.00
IUUC-Tgu-116984	Taeniopygia guttata	62.16	2.00e-80	291.00
IUUC-Tru-118339	Takifugu rubripes	47.53	1.00e-54	206.00
IUUC-Tbe-127537	Tupaia belangeri	70.49	2.00e-75	275.00
IUUC-Ttr-128822	Tursiops truncatus	70.16	3.00e-89	321.00
IUUC-Vpa-130266	Vicugna pacos	88.83	2.00e-82	298.00
IUUC-Xtr-132381	Xenopus tropicalis	52.68	7.00e-69	253.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence