iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Cgl-026612

Ensembl Protein ID

ELA23542

UniProt Accession

L2FB17; L2FB17_COLGN

Genbank Protein ID

ELA23542.1

Protein Name

Tfiih basal transcription factor complex p47 subunit

Genbank Nucleotide ID

KB021378

Gene Name

CGGC5_14750

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
CGGC5_14750	ELA23542	ELA23542

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/RING/RING	47.70	4.00e-109	389.00	IUUC-Sce-106434

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Colletotrichum gloeosporioides

Protein Sequence
(Fasta)

MADSDGEYVE DMSDDDLHDH RVTNGNGAGG KPGKARGKKG KSGHSKARWE DVKRSWEEVT 60
EGADGSLAVG ASLEAEKRRR LLKDTTPLQR GIIRHLVLVL DMSFAMTEKD MLPNRYRVTW 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCCGACT CCGACGGCGA GTACGTCGAG GACATGTCCG ATGACGATCT CCACGATCAT 60
CGAGTAACCA ACGGCAACGG CGCAGGCGGA AAACCCGGGA AAGCGCGTGG CAAGAAAGGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR007198--Ssl1-like
IPR004595--TFIIH_C1-like_dom
IPR012170--TFIIH_SSL1/p44
IPR002035--VWF_A
IPR013087--Znf_C2H2_type
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50234--VWFA
PS00028--ZINC_FINGER_C2H2_1

Pfam

PF07975--C1_4
PF04056--Ssl1

SMART

SM01047--C1_4
SM00327--VWA

Gene Ontology

GO:0000439--C:core TFIIH complex
GO:0005829--C:cytosol
GO:0008270--F:zinc ion binding
GO:0006289--P:nucleotide-excision repair
GO:0006351--P:transcription, DNA-templated

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000536	Aegilops tauschii	36.46	8.00e-45	172.00
IUUC-Aml-002041	Ailuropoda melanoleuca	35.55	1.00e-65	241.00
IUUC-Atr-003056	Amborella trichopoda	36.87	1.00e-66	244.00
IUUC-Apl-003464	Anas platyrhynchos	34.18	2.00e-61	227.00
IUUC-Aca-004745	Anolis carolinensis	38.55	4.00e-67	246.00
IUUC-Aly-005559	Arabidopsis lyrata	37.59	1.00e-70	258.00
IUUC-Ath-007556	Arabidopsis thaliana	37.35	3.00e-70	256.00
IUUC-Ago-007851	Ashbya gossypii	48.79	1.00e-114	405.00
IUUC-Acl-008100	Aspergillus clavatus	57.27	3.00e-154	536.00
IUUC-Afl-008649	Aspergillus flavus	60.92	3.00e-27	110.00
IUUC-Afu-009066	Aspergillus fumigatus	56.05	3.00e-160	556.00
IUUC-Ani-009372	Aspergillus nidulans	58.09	7.00e-158	548.00
IUUC-Ang-009726	Aspergillus niger	57.05	5.00e-162	562.00
IUUC-Aor-010135	Aspergillus oryzae	56.14	6.00e-153	531.00
IUUC-Ate-010399	Aspergillus terreus	53.66	7.00e-55	204.00
IUUC-Ame-011618	Astyanax mexicanus	34.65	2.00e-71	260.00
IUUC-Bgr-012154	Blumeria graminis	59.11	5.00e-166	575.00
IUUC-Bta-012353	Bos taurus	35.55	1.00e-68	251.00
IUUC-Bci-013932	Botrytis cinerea	64.48	4.00e-178	615.00
IUUC-Bdi-014391	Brachypodium distachyon	37.32	8.00e-71	259.00
IUUC-Bol-015128	Brassica oleracea	36.95	5.00e-72	263.00
IUUC-Bra-017932	Brassica rapa	36.95	8.00e-72	262.00
IUUC-Cel-018649	Caenorhabditis elegans	31.95	2.00e-50	191.00
IUUC-Cja-018776	Callithrix jacchus	35.07	8.00e-64	235.00
IUUC-Cfa-020584	Canis familiaris	35.31	4.00e-65	239.00
IUUC-Cpo-021300	Cavia porcellus	35.31	8.00e-66	242.00
IUUC-Cre-022657	Chlamydomonas reinhardtii	34.62	6.00e-59	219.00
IUUC-Csa-024092	Chlorocebus sabaeus	35.07	1.00e-64	238.00
IUUC-Cho-024919	Choloepus hoffmanni	34.56	7.00e-29	118.00
IUUC-Cin-025386	Ciona intestinalis	33.80	1.00e-64	238.00
IUUC-Csv-026295	Ciona savignyi	33.18	9.00e-66	242.00
IUUC-Cne-026956	Cryptococcus neoformans	35.01	2.00e-74	270.00
IUUC-Cme-027150	Cyanidioschyzon merolae	33.25	1.00e-44	172.00
IUUC-Dre-027962	Danio rerio	34.36	3.00e-72	263.00
IUUC-Dno-029979	Dasypus novemcinctus	37.42	5.00e-58	216.00
IUUC-Dor-030640	Dipodomys ordii	36.67	9.60e-01	27.30
IUUC-Dse-031405	Dothistroma septosporum	54.37	2.00e-131	460.00
IUUC-Dme-031710	Drosophila melanogaster	32.12	6.00e-67	246.00
IUUC-Ete-032631	Echinops telfairi	32.63	3.00e-58	217.00
IUUC-Eca-034054	Equus caballus	38.26	7.00e-68	249.00
IUUC-Fca-035724	Felis catus	33.65	2.00e-59	221.00
IUUC-Fal-036987	Ficedula albicollis	35.07	2.00e-71	261.00
IUUC-Fox-037692	Fusarium oxysporum	71.24	0.00e+00	680.00
IUUC-Fso-038442	Fusarium solani	69.88	0.00e+00	633.00
IUUC-Gmo-039273	Gadus morhua	34.80	2.00e-72	264.00
IUUC-Ggr-040009	Gaeumannomyces graminis	54.72	3.00e-152	530.00
IUUC-Gga-041089	Gallus gallus	34.60	4.00e-71	259.00
IUUC-Gac-041978	Gasterosteus aculeatus	33.41	3.00e-65	240.00
IUUC-Gma-043371	Glycine max	40.05	2.00e-75	274.00
IUUC-Ggo-044459	Gorilla gorilla	36.67	1.80e+00	26.60
IUUC-Hsa-046001	Homo sapiens	35.31	6.00e-65	239.00
IUUC-Itr-048355	Ictidomys tridecemlineatus	35.55	1.00e-72	265.00
IUUC-Kpa-049235	Komagataella pastoris	47.87	9.00e-114	401.00
IUUC-Lch-049926	Latimeria chalumnae	35.31	2.00e-68	251.00
IUUC-Lpe-051352	Leersia perrieri	37.02	6.00e-70	256.00
IUUC-Loc-051987	Lepisosteus oculatus	34.66	2.00e-71	260.00
IUUC-Lma-053171	Leptosphaeria maculans	45.88	7.00e-118	416.00
IUUC-Laf-054372	Loxodonta africana	35.55	1.00e-68	251.00
IUUC-Mcc-055108	Macaca mulatta	35.31	4.00e-65	239.00
IUUC-Mor-056990	Magnaporthe oryzae	57.92	2.00e-155	540.00
IUUC-Mtr-058401	Medicago truncatula	39.84	4.00e-73	266.00
IUUC-Mla-059186	Melampsora laricipopulina	41.00	4.00e-92	330.00
IUUC-Mvi-060262	Microbotryum violaceum	37.74	1.00e-85	308.00
IUUC-Mmr-061688	Microcebus murinus	33.65	3.00e-58	217.00
IUUC-Mdo-062154	Monodelphis domestica	35.31	4.00e-70	256.00
IUUC-Mmu-064232	Mus musculus	35.46	8.00e-65	238.00
IUUC-Mac-065091	Musa acuminata	38.53	5.00e-72	263.00
IUUC-Mpu-066747	Mustela putorius furo	32.94	1.00e-52	198.00
IUUC-Mlu-067799	Myotis lucifugus	32.94	5.00e-56	209.00
IUUC-Nfi-068371	Neosartorya fischeri	41.33	1.00e-36	143.00
IUUC-Ncr-068704	Neurospora crassa	61.22	4.00e-167	579.00
IUUC-Nle-069054	Nomascus leucogenys	35.07	2.00e-63	234.00
IUUC-Opr-071166	Ochotona princeps	36.67	2.20e+00	25.80
IUUC-Ont-071624	Oreochromis niloticus	33.89	6.00e-69	252.00
IUUC-Oan-072898	Ornithorhynchus anatinus	34.83	3.00e-70	256.00
IUUC-Ocu-074289	Oryctolagus cuniculus	35.83	4.00e-52	196.00
IUUC-Oba-075985	Oryza barthii	37.65	1.00e-69	254.00
IUUC-Obr-076887	Oryza brachyantha	37.68	2.00e-72	264.00
IUUC-Ogl-077823	Oryza glaberrima	37.65	1.00e-69	254.00
IUUC-Ogu-078412	Oryza glumaepatula	40.48	8.00e-62	229.00
IUUC-Oin-079569	Oryza indica	37.59	6.00e-47	179.00
IUUC-Olo-080249	Oryza longistaminata	37.33	1.00e-46	179.00
IUUC-Ome-081240	Oryza meridionalis	40.48	2.00e-61	228.00
IUUC-Oni-082152	Oryza nivara	40.87	2.00e-61	228.00
IUUC-Opu-084011	Oryza punctata	37.41	3.00e-69	253.00
IUUC-Oru-084719	Oryza rufipogon	39.39	4.00e-63	233.00
IUUC-Osa-085286	Oryza sativa	37.89	6.00e-71	259.00
IUUC-Ola-086525	Oryzias latipes	33.01	3.00e-55	207.00
IUUC-Olu-087876	Ostreococcus lucimarinus	35.41	1.00e-50	191.00
IUUC-Oga-088125	Otolemur garnettii	37.39	1.00e-66	244.00
IUUC-Oar-089701	Ovis aries	35.31	5.00e-68	249.00
IUUC-Ptr-091218	Pan troglodytes	35.31	6.00e-65	239.00
IUUC-Pan-091755	Papio anubis	35.31	4.00e-65	239.00
IUUC-Psi-094061	Pelodiscus sinensis	34.60	6.00e-70	256.00
IUUC-Pma-094430	Petromyzon marinus	38.80	8.00e-49	184.00
IUUC-Pno-094900	Phaeosphaeria nodorum	39.12	6.00e-78	283.00
IUUC-Ppa-095895	Physcomitrella patens	40.62	4.00e-85	306.00
IUUC-Pfo-096297	Poecilia formosa	37.20	4.00e-47	179.00
IUUC-Pab-097717	Pongo abelii	35.31	4.00e-65	239.00
IUUC-Pop-098938	Populus trichocarpa	37.86	5.00e-74	269.00
IUUC-Pca-100389	Procavia capensis	36.64	4.00e-53	199.00
IUUC-Ppe-102045	Prunus persica	37.70	1.00e-72	265.00
IUUC-Pva-102357	Pteropus vampyrus	35.93	5.00e-23	99.00
IUUC-Pgr-103399	Puccinia graminis	42.72	2.00e-95	340.00
IUUC-Ptt-103872	Puccinia triticina	42.89	4.00e-96	343.00
IUUC-Pte-104092	Pyrenophora teres	45.47	5.00e-108	382.00
IUUC-Pyt-104669	Pyrenophora triticirepentis	44.86	8.00e-107	379.00
IUUC-Rno-105515	Rattus norvegicus	35.70	3.00e-68	250.00
IUUC-Sce-106434	Saccharomyces cerevisiae	48.31	9.00e-114	401.00
IUUC-Sha-106808	Sarcophilus harrisii	35.07	2.00e-69	254.00
IUUC-Sja-107995	Schizosaccharomyces japonicus	48.97	2.00e-117	413.00
IUUC-Spo-108044	Schizosaccharomyces pombe	52.43	2.00e-127	446.00
IUUC-Smo-109581	Selaginella moellendorffii	39.57	6.00e-73	266.00
IUUC-Sit-110704	Setaria italica	37.32	3.00e-70	256.00
IUUC-Sly-110990	Solanum lycopersicum	37.79	9.00e-62	228.00
IUUC-Stu-112542	Solanum tuberosum	35.68	2.00e-34	137.00
IUUC-Sar-113766	Sorex araneus	36.53	7.00e-56	208.00
IUUC-Sbi-114016	Sorghum bicolor	36.77	2.00e-71	261.00
IUUC-Sre-115099	Sporisorium reilianum	45.18	4.00e-105	373.00
IUUC-Ssc-115277	Sus scrofa	37.68	6.00e-65	239.00
IUUC-Tgu-117343	Taeniopygia guttata	34.68	3.00e-72	263.00
IUUC-Tru-118397	Takifugu rubripes	34.60	5.00e-69	253.00
IUUC-Tni-120272	Tetraodon nigroviridis	33.57	1.00e-66	244.00
IUUC-Tca-121514	Theobroma cacao	36.77	3.00e-75	273.00
IUUC-Tre-121990	Trichoderma reesei	67.43	3.00e-177	613.00
IUUC-Tvi-122504	Trichoderma virens	69.78	6.00e-165	571.00
IUUC-Tae-123153	Triticum aestivum	36.05	2.00e-69	254.00
IUUC-Tur-126693	Triticum urartu	42.64	1.00e-57	214.00
IUUC-Tme-127011	Tuber melanosporum	56.25	5.00e-154	535.00
IUUC-Tbe-127939	Tupaia belangeri	35.07	5.00e-64	236.00
IUUC-Ttr-128889	Tursiops truncatus	35.41	3.00e-49	187.00
IUUC-Uma-129450	Ustilago maydis	43.90	2.00e-105	374.00
IUUC-Vda-129919	Verticillium dahliae	66.32	2.00e-158	550.00
IUUC-Vvi-130928	Vitis vinifera	37.94	4.00e-73	266.00
IUUC-Xtr-131891	Xenopus tropicalis	33.41	3.00e-64	236.00
IUUC-Xma-133260	Xiphophorus maculatus	36.80	2.00e-46	177.00
IUUC-Yli-134578	Yarrowia lipolytica	48.72	2.00e-119	420.00
IUUC-Zma-135427	Zea mays	36.77	2.00e-71	261.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence