iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
microRNA	RAID2
Protein-protein Interaction
IID	PINA	Mentha
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/RING/RING	36.12	2.00e-72	267.00	IUUC-Sce-106434

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Drosophila melanogaster

Protein Sequence
(Fasta)

MADDEQEDQK EYRWETGYEK TWEAIKDDED GMLDGAIAEI IQKAKRQRQA QKSKQNRLGM 60
MRHMFVVLDC SESMSVPDLK PTRLRCTVKL LELFIEEFFD QNPISQLGLI ALKAKRAEKV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATTGATGTGG CAACTTTGGG CGCAATAATA ATAATATTGT ACTTTTTTTG TTCATATTAG 60
GTAAGAAATT CGAAATTATT TTTTATTATT TCATTTTATT ATGTCATTCT TTTGTAGATA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR007198--Ssl1-like
IPR004595--TFIIH_C1-like_dom
IPR012170--TFIIH_SSL1/p44
IPR002035--VWF_A
IPR013087--Znf_C2H2_type

PROSITE

PS50234--VWFA
PS00028--ZINC_FINGER_C2H2_1

Pfam

PF07975--C1_4
PF04056--Ssl1

SMART

SM01047--C1_4
SM00327--VWA

Gene Ontology

GO:0000439--C:core TFIIH complex
GO:0005675--C:holo TFIIH complex
GO:0005634--C:nucleus
GO:0003676--F:nucleic acid binding
GO:0008270--F:zinc ion binding
GO:0006289--P:nucleotide-excision repair
GO:0001111--P:promoter clearance from RNA polymerase II promoter
GO:0006357--P:regulation of transcription from RNA polymerase II promoter
GO:0006366--P:transcription from RNA polymerase II promoter
GO:0006367--P:transcription initiation from RNA polymerase II promoter
GO:0001113--P:transcriptional open complex formation at RNA polymerase II promoter

KEGG

dme:Dmel_CG11115

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000536	Aegilops tauschii	33.11	3.00e-43	168.00
IUUC-Aml-002041	Ailuropoda melanoleuca	50.86	5.00e-106	376.00
IUUC-Atr-003056	Amborella trichopoda	42.73	3.00e-75	274.00
IUUC-Apl-003464	Anas platyrhynchos	50.68	3.00e-97	347.00
IUUC-Aca-004745	Anolis carolinensis	52.35	3.00e-108	384.00
IUUC-Aly-005559	Arabidopsis lyrata	38.48	1.00e-77	283.00
IUUC-Ath-007556	Arabidopsis thaliana	38.48	1.00e-77	282.00
IUUC-Ago-007851	Ashbya gossypii	37.47	1.00e-76	279.00
IUUC-Acl-008100	Aspergillus clavatus	36.00	2.00e-72	265.00
IUUC-Afl-008649	Aspergillus flavus	39.39	2.00e-11	58.90
IUUC-Afu-009066	Aspergillus fumigatus	36.75	3.00e-76	278.00
IUUC-Ani-009372	Aspergillus nidulans	37.00	1.00e-71	263.00
IUUC-Ang-009726	Aspergillus niger	36.41	2.00e-77	282.00
IUUC-Aor-010135	Aspergillus oryzae	36.56	2.00e-72	265.00
IUUC-Ate-010399	Aspergillus terreus	34.62	8.00e-22	95.90
IUUC-Ame-011618	Astyanax mexicanus	50.50	8.00e-115	405.00
IUUC-Bgr-012154	Blumeria graminis	33.64	2.00e-70	259.00
IUUC-Bta-012353	Bos taurus	50.24	1.00e-110	392.00
IUUC-Bci-013932	Botrytis cinerea	33.90	4.00e-71	261.00
IUUC-Bdi-014391	Brachypodium distachyon	37.25	2.00e-74	271.00
IUUC-Bol-015128	Brassica oleracea	39.21	5.00e-79	287.00
IUUC-Bra-017932	Brassica rapa	38.21	2.00e-78	285.00
IUUC-Cel-018649	Caenorhabditis elegans	37.16	6.00e-73	266.00
IUUC-Cja-018776	Callithrix jacchus	50.49	1.00e-105	375.00
IUUC-Cfa-020584	Canis familiaris	50.73	5.00e-107	380.00
IUUC-Cpo-021300	Cavia porcellus	50.73	1.00e-106	379.00
IUUC-Cre-022657	Chlamydomonas reinhardtii	36.48	3.00e-67	248.00
IUUC-Csa-024092	Chlorocebus sabaeus	50.73	3.00e-107	380.00
IUUC-Cho-024919	Choloepus hoffmanni	46.26	2.00e-44	171.00
IUUC-Cin-025386	Ciona intestinalis	49.14	2.00e-104	371.00
IUUC-Csv-026295	Ciona savignyi	44.89	2.00e-100	358.00
IUUC-Cgl-026612	Colletotrichum gloeosporioides	32.25	8.00e-66	243.00
IUUC-Cne-026956	Cryptococcus neoformans	34.17	3.00e-74	271.00
IUUC-Cme-027150	Cyanidioschyzon merolae	31.40	4.00e-49	188.00
IUUC-Dre-027962	Danio rerio	50.00	2.00e-115	407.00
IUUC-Dno-029979	Dasypus novemcinctus	50.82	7.00e-88	316.00
IUUC-Dse-031405	Dothistroma septosporum	34.12	3.00e-64	238.00
IUUC-Ete-032631	Echinops telfairi	48.25	2.00e-98	352.00
IUUC-Eca-034054	Equus caballus	51.23	1.00e-107	382.00
IUUC-Fca-035724	Felis catus	49.03	1.00e-101	362.00
IUUC-Fal-036987	Ficedula albicollis	52.24	4.00e-119	420.00
IUUC-Fox-037692	Fusarium oxysporum	34.21	5.00e-69	254.00
IUUC-Fso-038442	Fusarium solani	34.43	6.00e-66	243.00
IUUC-Gmo-039273	Gadus morhua	50.75	3.00e-114	404.00
IUUC-Ggr-040009	Gaeumannomyces graminis	34.85	4.00e-52	198.00
IUUC-Gga-041089	Gallus gallus	52.24	5.00e-118	416.00
IUUC-Gac-041978	Gasterosteus aculeatus	49.00	4.00e-107	380.00
IUUC-Gma-043371	Glycine max	39.40	2.00e-83	301.00
IUUC-Hsa-046001	Homo sapiens	50.49	9.00e-107	379.00
IUUC-Itr-048355	Ictidomys tridecemlineatus	50.98	5.00e-115	406.00
IUUC-Kpa-049235	Komagataella pastoris	36.71	6.00e-66	243.00
IUUC-Lch-049926	Latimeria chalumnae	50.75	1.00e-108	385.00
IUUC-Lpe-051352	Leersia perrieri	37.91	2.00e-71	262.00
IUUC-Loc-051987	Lepisosteus oculatus	49.00	5.00e-111	393.00
IUUC-Lma-053171	Leptosphaeria maculans	30.52	5.00e-57	214.00
IUUC-Laf-054372	Loxodonta africana	51.00	8.00e-111	392.00
IUUC-Mcc-055108	Macaca mulatta	50.73	4.00e-107	380.00
IUUC-Mor-056990	Magnaporthe oryzae	31.79	3.00e-65	241.00
IUUC-Mtr-058401	Medicago truncatula	39.66	1.00e-82	299.00
IUUC-Mla-059186	Melampsora laricipopulina	36.10	7.00e-79	286.00
IUUC-Mvi-060262	Microbotryum violaceum	36.08	5.00e-75	274.00
IUUC-Mmr-061688	Microcebus murinus	47.45	8.00e-96	342.00
IUUC-Mdo-062154	Monodelphis domestica	50.50	3.00e-110	390.00
IUUC-Mmu-064232	Mus musculus	50.37	9.00e-106	375.00
IUUC-Mac-065091	Musa acuminata	38.14	2.00e-74	271.00
IUUC-Mpu-066747	Mustela putorius furo	46.42	1.00e-88	319.00
IUUC-Mlu-067799	Myotis lucifugus	46.83	4.00e-91	327.00
IUUC-Nfi-068371	Neosartorya fischeri	28.08	2.00e-15	73.90
IUUC-Ncr-068704	Neurospora crassa	32.64	4.00e-62	231.00
IUUC-Nle-069054	Nomascus leucogenys	50.49	2.00e-106	377.00
IUUC-Ont-071624	Oreochromis niloticus	49.25	7.00e-109	386.00
IUUC-Oan-072898	Ornithorhynchus anatinus	50.75	1.00e-111	395.00
IUUC-Ocu-074289	Oryctolagus cuniculus	50.97	3.00e-87	313.00
IUUC-Oba-075985	Oryza barthii	37.41	8.00e-71	259.00
IUUC-Obr-076887	Oryza brachyantha	37.41	2.00e-72	265.00
IUUC-Ogl-077823	Oryza glaberrima	37.41	8.00e-71	259.00
IUUC-Ogu-078412	Oryza glumaepatula	39.04	2.00e-64	239.00
IUUC-Oin-079569	Oryza indica	34.67	4.00e-46	178.00
IUUC-Olo-080249	Oryza longistaminata	34.11	4.00e-45	175.00
IUUC-Ome-081240	Oryza meridionalis	39.04	2.00e-64	239.00
IUUC-Oni-082152	Oryza nivara	39.04	4.00e-64	238.00
IUUC-Opu-084011	Oryza punctata	37.16	2.00e-70	259.00
IUUC-Oru-084719	Oryza rufipogon	37.60	2.00e-64	238.00
IUUC-Osa-085286	Oryza sativa	37.66	6.00e-72	264.00
IUUC-Ola-086525	Oryzias latipes	43.39	4.00e-87	313.00
IUUC-Olu-087876	Ostreococcus lucimarinus	37.00	5.00e-58	217.00
IUUC-Oga-088125	Otolemur garnettii	50.49	2.00e-110	391.00
IUUC-Oar-089701	Ovis aries	48.82	8.00e-110	389.00
IUUC-Ptr-091218	Pan troglodytes	50.73	5.00e-107	380.00
IUUC-Pan-091755	Papio anubis	50.73	4.00e-107	380.00
IUUC-Psi-094061	Pelodiscus sinensis	52.74	2.00e-114	404.00
IUUC-Pma-094430	Petromyzon marinus	50.79	1.00e-73	268.00
IUUC-Pno-094900	Phaeosphaeria nodorum	34.03	6.00e-23	102.00
IUUC-Ppa-095895	Physcomitrella patens	40.25	1.00e-87	315.00
IUUC-Pfo-096297	Poecilia formosa	52.38	1.00e-76	278.00
IUUC-Pab-097717	Pongo abelii	50.73	4.00e-107	380.00
IUUC-Pop-098938	Populus trichocarpa	40.55	1.00e-81	295.00
IUUC-Pca-100389	Procavia capensis	46.39	4.00e-82	297.00
IUUC-Ppe-102045	Prunus persica	39.04	7.00e-79	286.00
IUUC-Pva-102357	Pteropus vampyrus	48.88	1.00e-42	164.00
IUUC-Pgr-103399	Puccinia graminis	38.73	3.00e-86	311.00
IUUC-Ptt-103872	Puccinia triticina	38.63	6.00e-87	313.00
IUUC-Pte-104092	Pyrenophora teres	31.91	4.00e-50	191.00
IUUC-Pyt-104669	Pyrenophora triticirepentis	31.15	7.00e-50	190.00
IUUC-Rno-105515	Rattus norvegicus	50.49	4.00e-111	393.00
IUUC-Sce-106434	Saccharomyces cerevisiae	36.12	1.00e-74	272.00
IUUC-Sha-106808	Sarcophilus harrisii	51.50	1.00e-112	398.00
IUUC-Sja-107995	Schizosaccharomyces japonicus	35.44	5.00e-70	257.00
IUUC-Spo-108044	Schizosaccharomyces pombe	38.14	4.00e-80	290.00
IUUC-Smo-109581	Selaginella moellendorffii	38.35	1.00e-79	288.00
IUUC-Sit-110704	Setaria italica	37.66	6.00e-75	273.00
IUUC-Sly-110990	Solanum lycopersicum	42.59	3.00e-69	254.00
IUUC-Stu-112542	Solanum tuberosum	38.12	1.00e-41	162.00
IUUC-Sar-113766	Sorex araneus	52.35	8.00e-90	322.00
IUUC-Sbi-114016	Sorghum bicolor	37.28	2.00e-71	262.00
IUUC-Sre-115099	Sporisorium reilianum	35.40	3.00e-78	285.00
IUUC-Ssc-115277	Sus scrofa	50.73	5.00e-104	370.00
IUUC-Tgu-117343	Taeniopygia guttata	51.74	3.00e-117	414.00
IUUC-Tru-118397	Takifugu rubripes	49.25	5.00e-107	380.00
IUUC-Tni-120272	Tetraodon nigroviridis	49.01	7.00e-107	379.00
IUUC-Tca-121514	Theobroma cacao	40.54	6.00e-85	306.00
IUUC-Tre-121990	Trichoderma reesei	33.01	4.00e-63	234.00
IUUC-Tvi-122504	Trichoderma virens	35.03	8.00e-62	229.00
IUUC-Tae-123153	Triticum aestivum	36.88	5.00e-73	267.00
IUUC-Tur-126693	Triticum urartu	41.76	7.00e-59	219.00
IUUC-Tme-127011	Tuber melanosporum	36.06	6.00e-74	270.00
IUUC-Tbe-127939	Tupaia belangeri	50.49	2.00e-105	374.00
IUUC-Ttr-128889	Tursiops truncatus	45.32	1.00e-94	339.00
IUUC-Uma-129450	Ustilago maydis	34.54	3.00e-75	275.00
IUUC-Vda-129919	Verticillium dahliae	33.09	2.00e-55	209.00
IUUC-Vvi-130928	Vitis vinifera	40.55	7.00e-83	300.00
IUUC-Xtr-131891	Xenopus tropicalis	47.04	9.00e-98	349.00
IUUC-Xma-133260	Xiphophorus maculatus	52.38	5.00e-76	276.00
IUUC-Yli-134578	Yarrowia lipolytica	33.82	8.00e-67	246.00
IUUC-Zma-135427	Zea mays	38.02	5.00e-74	270.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence