iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sly-110895

Ensembl Protein ID

Solyc12g005950.1.1

UniProt Accession

K4DBD3; K4DBD3_SOLLC

Protein Name

Uncharacterized protein

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Solyc12g005950.1	Solyc12g005950.1.1	Solyc12g005950.1.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	1.20e-07	32.4	47	111
E3 adaptor/Cullin RING/DCX/DWD	9.20e-30	102.2	549	586
UBD/Beta-Prp	4.70e-41	141.6	373	674

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 4    eeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawc 69
            e+lCpI +++ +d   +++G+++   +I  +l ++   cP +++ lt ++l Pn  l +l ++  
   Q: 47   RELLCPICMQIIKDAFLTACGHSFCYMCIVTHLHNKSD-CPCCSHYLTTSQLYPNFLLDKLLKKTS 111
           589******************************99999.****************99987776655 PP

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sdtllvsGsdDgtikvWDlrtgvllk 37
           gH   v+ ++f s++ l+s+s D t+++WD++++ +++
   Q: 549  GHRKAVSYVKFlSNNELASASTDSTLRLWDVKDNLPVR 586
           79999******9889****************9998876 PP

UBD/Beta-Prp

   S: 10   ksvitcvkfspdksllatgsrdgtikvwdvttgkl........lrslsgheaevtavkfspdgk.ilvtgseDrtikvwdlstgkcvhtlk 91
            + ++++ f +d++l+at++ +++ikv+d+++           + ++s  + + +++++++ +k  ++++  D+++ vwd+ t++ v+ ++
   Q: 373  ANIVSSIEFDRDDELFATAGVSRRIKVFDFSSVVNepadahcpVVEMSTRS-KLSCLSWNKYTKnHIASSDYDGIVTVWDVTTRQSVMEYE 462
           567899**************************5558888888877777776.79*****9987769999999******************* PP
   S: 92   ghedsvlslsfspsg.dklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdl.ktgkllrtltggh 179
           +he++++s++fs++  + lvsGs+d  ++vw ++++  + +++ +  + ++cv+++p +   ++ Gs+D  +  +dl +t + ++ ++g h
   Q: 463  EHEKRAWSVDFSRTEpSMLVSGSDDCKVKVWCTKQEASVLNIDMK--ANICCVKYNPGSsVHIAVGSADHHIHYYDLrNTSQPVHIFSG-H 550
           *************888***************88888888655554..459*******99999***************77899******9.* PP
   S: 180  tdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriW..dlrsgdllktlqlhn.... 264
            ++v  ++f sn +el+s+s+d+t++lwd++ +  vrtl+ght+  + v +s n+e+l +gs+ + ++++   + +  +++ +  +     
   Q: 551  RKAVSYVKFLSN-NELASASTDSTLRLWDVKDNLPVRTLRGHTNEKNFVGLSVNNEFLSCGSETNEVFVYhkAISKPVTWHRFGSPDidea 640
           ***********8.7*******************************************************944445555555555555**** PP
   S: 265  .....ssvisvavlsfgdnvlvlgsedskvniwk 293
                s +is  +++ + + ++++ + ++++++ 
   Q: 641  dedagSYFISAVCWKSDSPTMLAANSQGTIKVLV 674
           ****9999999999***********9*9999975 PP

Organism

Solanum lycopersicum

Protein Sequence
(Fasta)

MVESSVGGVV PAVKGEVMRR MGDKEEGGSV TLRDEEVGTV TEWELDRELL CPICMQIIKD 60
AFLTACGHSF CYMCIVTHLH NKSDCPCCSH YLTTSQLYPN FLLDKLLKKT SARQISKTAS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGTGGAAA GTTCAGTTGG AGGGGTGGTG CCAGCAGTGA AGGGGGAGGT GATGAGGAGG 60
ATGGGGGACA AAGAGGAGGG GGGTAGTGTA ACTCTAAGGG ATGAAGAAGT TGGGACAGTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR027267--AH/BAR-dom
IPR020472--G-protein_beta_WD-40_rep
IPR002469--Peptidase_S9B_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00184--RING
SM00320--WD40

Gene Ontology

GO:0016604--C:nuclear body
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0046283--P:anthocyanin-containing compound metabolic process
GO:0006281--P:DNA repair
GO:0009649--P:entrainment of circadian clock
GO:0009640--P:photomorphogenesis
GO:0048573--P:photoperiodism, flowering
GO:0010119--P:regulation of stomatal movement
GO:0009641--P:shade avoidance

KEGG

sly:543547

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000885	Aegilops tauschii	71.61	0.00e+00	955.00
IUUC-Atr-002460	Amborella trichopoda	73.55	0.00e+00	976.00
IUUC-Aly-006014	Arabidopsis lyrata	79.65	0.00e+00	1065.00
IUUC-Ath-007636	Arabidopsis thaliana	76.50	0.00e+00	1073.00
IUUC-Bdi-014152	Brachypodium distachyon	73.38	0.00e+00	964.00
IUUC-Bol-016380	Brassica oleracea	76.81	0.00e+00	1054.00
IUUC-Bra-017690	Brassica rapa	75.22	0.00e+00	1029.00
IUUC-Cin-025375	Ciona intestinalis	38.89	8.00e-121	426.00
IUUC-Cme-027350	Cyanidioschyzon merolae	45.36	5.00e-95	341.00
IUUC-Dor-031110	Dipodomys ordii	51.80	8.00e-94	337.00
IUUC-Ete-033016	Echinops telfairi	51.80	2.00e-93	336.00
IUUC-Eeu-034690	Erinaceus europaeus	51.42	9.00e-88	317.00
IUUC-Gmo-039245	Gadus morhua	48.96	1.00e-106	379.00
IUUC-Gac-042177	Gasterosteus aculeatus	39.33	4.00e-127	447.00
IUUC-Gma-044187	Glycine max	78.46	0.00e+00	1028.00
IUUC-Itr-048238	Ictidomys tridecemlineatus	54.19	9.00e-73	265.00
IUUC-Lpe-051219	Leersia perrieri	74.00	0.00e+00	956.00
IUUC-Loc-052728	Lepisosteus oculatus	40.49	2.00e-120	426.00
IUUC-Meu-056595	Macropus eugenii	42.18	1.00e-60	227.00
IUUC-Mtr-058555	Medicago truncatula	75.44	0.00e+00	1064.00
IUUC-Mac-065240	Musa acuminata	72.37	0.00e+00	1004.00
IUUC-Opr-070366	Ochotona princeps	45.41	7.00e-46	177.00
IUUC-Ont-071522	Oreochromis niloticus	39.35	5.00e-127	447.00
IUUC-Oba-075149	Oryza barthii	73.82	0.00e+00	973.00
IUUC-Obr-076563	Oryza brachyantha	74.17	0.00e+00	969.00
IUUC-Ogl-077701	Oryza glaberrima	74.17	0.00e+00	976.00
IUUC-Ogu-078383	Oryza glumaepatula	74.17	0.00e+00	976.00
IUUC-Oin-079965	Oryza indica	69.10	0.00e+00	893.00
IUUC-Olo-080639	Oryza longistaminata	72.04	0.00e+00	959.00
IUUC-Ome-081821	Oryza meridionalis	73.49	0.00e+00	900.00
IUUC-Oni-082622	Oryza nivara	74.17	0.00e+00	976.00
IUUC-Opu-083295	Oryza punctata	73.91	0.00e+00	978.00
IUUC-Oru-084661	Oryza rufipogon	74.17	0.00e+00	976.00
IUUC-Osa-085766	Oryza sativa	74.17	0.00e+00	976.00
IUUC-Pma-094587	Petromyzon marinus	38.17	4.00e-113	400.00
IUUC-Ppa-095401	Physcomitrella patens	61.80	0.00e+00	847.00
IUUC-Pfo-097388	Poecilia formosa	39.47	9.00e-126	443.00
IUUC-Pop-099319	Populus trichocarpa	76.81	0.00e+00	1084.00
IUUC-Pca-100846	Procavia capensis	46.35	2.00e-107	382.00
IUUC-Sha-106514	Sarcophilus harrisii	48.36	2.00e-102	364.00
IUUC-Smo-109418	Selaginella moellendorffii	62.15	0.00e+00	805.00
IUUC-Sit-110248	Setaria italica	74.65	0.00e+00	985.00
IUUC-Stu-112386	Solanum tuberosum	95.57	0.00e+00	1338.00
IUUC-Sar-113230	Sorex araneus	44.19	1.00e-71	263.00
IUUC-Sbi-113962	Sorghum bicolor	67.72	0.00e+00	956.00
IUUC-Tni-120893	Tetraodon nigroviridis	39.02	1.00e-121	429.00
IUUC-Tca-121619	Theobroma cacao	79.72	0.00e+00	1080.00
IUUC-Tae-125440	Triticum aestivum	73.17	0.00e+00	986.00
IUUC-Tur-126557	Triticum urartu	72.44	0.00e+00	957.00
IUUC-Tbe-127253	Tupaia belangeri	44.44	2.00e-73	269.00
IUUC-Vvi-131386	Vitis vinifera	75.77	0.00e+00	1046.00
IUUC-Xma-133421	Xiphophorus maculatus	39.47	8.00e-126	443.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence