iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
circBase	microRNA	miRNAMap	RAID2
Protein-protein Interaction
iRefIndex	Mentha
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
UBD/ZnF/NZF	43.44	5.00e-129	459.00	IUUC-Hsa-046334

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Caenorhabditis elegans

Protein Sequence
(Fasta)

MVIEVPQTER VNDVDVFLST QDGQIQRPKG PNCRHPVRQK CTNCLPVDPF DEEYLKEKDI 60
KHMSFHAHVR KLLGSQGKGT TLKKPLENFR CSLKPNCDAH KPFPKGICTK CKPQVVTLNR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATATGGTAAT TGAAGTCCCT CAAACTGAGC GTGTCAACGA CGTTGATGTT TTTTTAAGCA 60
CGCAAGATGG TCAAATTCAG CGTCCAAAAG GGCCCAACTG TCGGCATCCT GTACGTCAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR016563--Npl4
IPR007717--NPL4_C
IPR007716--NPL4_Zn-bd_put
IPR001876--Znf_RanBP2

PROSITE

PS01358--ZF_RANBP2_1
PS50199--ZF_RANBP2_2

Pfam

PF05021--NPL4
PF05020--zf-NPL4

SMART

SM00547--ZnF_RBZ

Gene Ontology

GO:0005634--C:nucleus
GO:0034098--C:VCP-NPL4-UFD1 AAA ATPase complex
GO:0043130--F:ubiquitin binding
GO:0031625--F:ubiquitin protein ligase binding
GO:0008270--F:zinc ion binding
GO:0009792--P:embryo development ending in birth or egg hatching
GO:0071712--P:ER-associated misfolded protein catabolic process
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG

cel:CELE_F59E12.5

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000460	Aegilops tauschii	28.39	5.00e-10	57.80
IUUC-Aml-002268	Ailuropoda melanoleuca	43.82	2.00e-129	454.00
IUUC-Atr-002939	Amborella trichopoda	22.26	4.00e-08	51.20
IUUC-Apl-003496	Anas platyrhynchos	45.16	9.00e-122	429.00
IUUC-Aca-005230	Anolis carolinensis	43.29	2.00e-130	457.00
IUUC-Aly-005413	Arabidopsis lyrata	26.09	7.00e-09	53.90
IUUC-Ath-007051	Arabidopsis thaliana	25.67	2.00e-08	52.40
IUUC-Ago-007954	Ashbya gossypii	38.77	9.00e-76	276.00
IUUC-Afu-008825	Aspergillus fumigatus	36.60	6.00e-84	303.00
IUUC-Ang-009762	Aspergillus niger	35.03	9.00e-78	283.00
IUUC-Aor-010199	Aspergillus oryzae	38.81	2.00e-77	282.00
IUUC-Ate-010592	Aspergillus terreus	37.77	3.00e-80	291.00
IUUC-Ame-011587	Astyanax mexicanus	28.60	6.00e-58	217.00
IUUC-Bgr-012124	Blumeria graminis	39.34	2.00e-80	292.00
IUUC-Bta-013312	Bos taurus	43.63	2.00e-130	457.00
IUUC-Bci-013648	Botrytis cinerea	36.40	8.00e-83	300.00
IUUC-Bdi-014326	Brachypodium distachyon	27.74	3.00e-10	58.20
IUUC-Bra-017023	Brassica rapa	26.63	2.00e-09	55.50
IUUC-Cja-018869	Callithrix jacchus	43.63	1.00e-128	452.00
IUUC-Cfa-020757	Canis familiaris	43.44	6.00e-130	456.00
IUUC-Cpo-022390	Cavia porcellus	43.44	5.00e-129	453.00
IUUC-Csa-023366	Chlorocebus sabaeus	43.24	1.00e-129	455.00
IUUC-Cin-025638	Ciona intestinalis	43.46	7.00e-106	376.00
IUUC-Cgl-026685	Colletotrichum gloeosporioides	36.79	2.00e-80	292.00
IUUC-Cme-027248	Cyanidioschyzon merolae	31.94	3.00e-11	61.60
IUUC-Dre-027689	Danio rerio	45.86	3.00e-134	471.00
IUUC-Dno-030004	Dasypus novemcinctus	43.44	2.00e-128	451.00
IUUC-Dse-031202	Dothistroma septosporum	35.42	1.00e-75	276.00
IUUC-Dme-032092	Drosophila melanogaster	41.70	4.00e-115	407.00
IUUC-Ete-033009	Echinops telfairi	50.00	3.00e-48	184.00
IUUC-Eca-034001	Equus caballus	43.63	3.00e-130	457.00
IUUC-Eeu-034485	Erinaceus europaeus	34.35	4.00e-78	284.00
IUUC-Fca-036128	Felis catus	43.44	4.00e-130	457.00
IUUC-Fal-037523	Ficedula albicollis	43.87	9.00e-129	452.00
IUUC-Fox-037802	Fusarium oxysporum	35.71	1.00e-80	292.00
IUUC-Gmo-038486	Gadus morhua	43.51	1.00e-123	435.00
IUUC-Ggr-039916	Gaeumannomyces graminis	34.93	5.00e-78	284.00
IUUC-Gga-041208	Gallus gallus	43.63	3.00e-130	457.00
IUUC-Gac-042304	Gasterosteus aculeatus	43.02	3.00e-125	440.00
IUUC-Gma-044178	Glycine max	35.00	5.00e-06	44.30
IUUC-Ggo-045236	Gorilla gorilla	41.51	8.00e-120	422.00
IUUC-Hsa-046334	Homo sapiens	43.44	1.00e-130	459.00
IUUC-Lch-050302	Latimeria chalumnae	43.51	9.00e-126	442.00
IUUC-Lpe-051362	Leersia perrieri	29.03	6.00e-10	57.40
IUUC-Loc-052548	Lepisosteus oculatus	45.77	6.00e-131	459.00
IUUC-Lma-053092	Leptosphaeria maculans	34.66	2.00e-80	292.00
IUUC-Laf-053911	Loxodonta africana	43.82	2.00e-130	457.00
IUUC-Mcc-055830	Macaca mulatta	42.83	2.00e-126	444.00
IUUC-Mla-059190	Melampsora laricipopulina	32.53	1.00e-75	276.00
IUUC-Mga-060036	Meleagris gallopavo	43.44	1.00e-129	455.00
IUUC-Mmr-061300	Microcebus murinus	43.44	2.00e-129	454.00
IUUC-Mdo-062911	Monodelphis domestica	48.10	4.00e-120	423.00
IUUC-Mmu-063916	Mus musculus	43.44	2.00e-130	457.00
IUUC-Mpu-065912	Mustela putorius furo	43.63	5.00e-130	456.00
IUUC-Mlu-067965	Myotis lucifugus	44.23	2.00e-126	444.00
IUUC-Ncr-068936	Neurospora crassa	35.83	7.00e-80	290.00
IUUC-Nle-069570	Nomascus leucogenys	43.44	5.00e-130	456.00
IUUC-Opr-071097	Ochotona princeps	43.26	3.00e-112	397.00
IUUC-Ont-071430	Oreochromis niloticus	44.98	3.00e-132	464.00
IUUC-Ocu-074875	Oryctolagus cuniculus	41.81	4.00e-121	427.00
IUUC-Olo-080451	Oryza longistaminata	27.10	2.00e-08	51.60
IUUC-Opu-083122	Oryza punctata	27.74	4.00e-09	54.70
IUUC-Ola-087077	Oryzias latipes	39.25	4.00e-107	380.00
IUUC-Oga-088049	Otolemur garnettii	39.15	2.00e-112	398.00
IUUC-Oar-089678	Ovis aries	43.63	1.00e-130	459.00
IUUC-Pan-092821	Papio anubis	42.66	6.00e-126	443.00
IUUC-Psi-093074	Pelodiscus sinensis	43.44	3.00e-129	454.00
IUUC-Pma-094102	Petromyzon marinus	44.25	2.00e-125	441.00
IUUC-Pno-094987	Phaeosphaeria nodorum	37.73	9.00e-81	293.00
IUUC-Ppa-095368	Physcomitrella patens	23.66	7.00e-08	50.10
IUUC-Pfo-097245	Poecilia formosa	44.70	5.00e-130	456.00
IUUC-Pab-098763	Pongo abelii	43.24	2.00e-129	455.00
IUUC-Pop-099355	Populus trichocarpa	25.67	2.00e-08	52.00
IUUC-Pca-100428	Procavia capensis	52.17	1.00e-02	35.00
IUUC-Pgr-103553	Puccinia graminis	31.62	1.00e-69	256.00
IUUC-Pte-104100	Pyrenophora teres	35.42	4.00e-81	294.00
IUUC-Pyt-104482	Pyrenophora triticirepentis	35.38	1.00e-81	295.00
IUUC-Rno-105582	Rattus norvegicus	43.44	2.00e-130	457.00
IUUC-Sha-106647	Sarcophilus harrisii	43.68	2.00e-126	444.00
IUUC-Sja-107972	Schizosaccharomyces japonicus	39.47	3.00e-76	278.00
IUUC-Spo-108281	Schizosaccharomyces pombe	36.36	1.00e-72	266.00
IUUC-Sit-110083	Setaria italica	28.66	2.00e-10	59.30
IUUC-Sre-115095	Sporisorium reilianum	34.20	8.00e-76	276.00
IUUC-Ssc-116141	Sus scrofa	44.21	1.00e-131	461.00
IUUC-Tru-118463	Takifugu rubripes	44.32	5.00e-124	437.00
IUUC-Tsy-118993	Tarsius syrichta	38.70	3.00e-95	341.00
IUUC-Tni-119896	Tetraodon nigroviridis	44.72	1.00e-126	446.00
IUUC-Tca-121169	Theobroma cacao	26.46	2.00e-09	55.80
IUUC-Tre-122046	Trichoderma reesei	35.37	5.00e-81	294.00
IUUC-Tvi-122415	Trichoderma virens	36.51	8.00e-82	296.00
IUUC-Tae-123514	Triticum aestivum	28.39	2.00e-10	58.90
IUUC-Tbe-127629	Tupaia belangeri	46.04	1.00e-51	196.00
IUUC-Uma-129492	Ustilago maydis	34.51	5.00e-77	281.00
IUUC-Xtr-131786	Xenopus tropicalis	45.17	7.00e-134	469.00
IUUC-Xma-133997	Xiphophorus maculatus	44.51	1.00e-129	455.00
IUUC-Yli-134537	Yarrowia lipolytica	36.70	4.00e-77	281.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence