iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
RAID2
Post-translational Modifications (PTMs)
CPLM	dbPAF
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/RING/RING	57.73	0.00e+00	843.00	IUUC-Hsa-045921

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MASSPDPPSP LLVRLPESIP RAHMKLEIYF QSRASGGGEC SVHPVGPGAP DTFEVKFLEK 60
ADKENVLKRG KHKLLVDDKS VPIVLETIKK PEEDLRPRPP SLTQPAETPS SRPPSLTESL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCGAACTA CTCACCGGGT GATGGCCCTG GCCGACTGCA GAGCAAGAGA GGCGGCGGCT 60
CTGCGGGGAA CAGGGAGGGA CCTCCCGGGA AACGAAACTG AAACTTTGCC TCTCGGGTCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00518--ZF_RING_1
PS50089--ZF_RING_2

SMART

SM00184--RING

Gene Ontology

GO:0005829--C:cytosol
GO:0005654--C:nucleoplasm
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0006302--P:double-strand break repair
GO:0010390--P:histone monoubiquitination

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001770	Ailuropoda melanoleuca	50.68	0.00e+00	677.00
IUUC-Aca-004465	Anolis carolinensis	36.88	6.00e-113	401.00
IUUC-Aly-006143	Arabidopsis lyrata	38.30	2.00e-05	42.70
IUUC-Ame-011794	Astyanax mexicanus	33.21	3.00e-63	236.00
IUUC-Bta-012460	Bos taurus	51.81	0.00e+00	734.00
IUUC-Cja-019340	Callithrix jacchus	56.70	0.00e+00	835.00
IUUC-Cfa-020691	Canis familiaris	53.99	0.00e+00	768.00
IUUC-Cpo-021781	Cavia porcellus	51.30	0.00e+00	704.00
IUUC-Csa-024106	Chlorocebus sabaeus	58.68	0.00e+00	848.00
IUUC-Cho-024817	Choloepus hoffmanni	55.41	0.00e+00	749.00
IUUC-Cin-025746	Ciona intestinalis	55.73	9.00e-61	228.00
IUUC-Csv-025973	Ciona savignyi	52.22	1.00e-49	188.00
IUUC-Dre-028024	Danio rerio	30.25	5.00e-66	246.00
IUUC-Dno-028880	Dasypus novemcinctus	57.12	0.00e+00	784.00
IUUC-Dor-030737	Dipodomys ordii	53.70	0.00e+00	731.00
IUUC-Ete-033015	Echinops telfairi	48.20	3.00e-80	293.00
IUUC-Eca-034086	Equus caballus	55.20	0.00e+00	753.00
IUUC-Eeu-034446	Erinaceus europaeus	52.46	1.00e-174	606.00
IUUC-Fca-036218	Felis catus	54.62	0.00e+00	798.00
IUUC-Fal-036797	Ficedula albicollis	35.81	2.00e-117	416.00
IUUC-Gmo-039017	Gadus morhua	55.25	1.00e-61	228.00
IUUC-Gga-041219	Gallus gallus	36.04	1.00e-111	397.00
IUUC-Ggo-044786	Gorilla gorilla	57.60	0.00e+00	847.00
IUUC-Hsa-045921	Homo sapiens	57.73	0.00e+00	851.00
IUUC-Itr-047911	Ictidomys tridecemlineatus	58.18	0.00e+00	845.00
IUUC-Loc-052602	Lepisosteus oculatus	38.83	4.00e-70	259.00
IUUC-Laf-054092	Loxodonta africana	54.23	0.00e+00	769.00
IUUC-Meu-056309	Macropus eugenii	41.85	2.00e-126	446.00
IUUC-Mga-059221	Meleagris gallopavo	35.46	2.00e-106	380.00
IUUC-Mmr-061722	Microcebus murinus	56.40	0.00e+00	807.00
IUUC-Mdo-062897	Monodelphis domestica	41.18	7.00e-149	521.00
IUUC-Mmu-063310	Mus musculus	76.21	0.00e+00	1104.00
IUUC-Mpu-065715	Mustela putorius furo	52.97	0.00e+00	738.00
IUUC-Mlu-068125	Myotis lucifugus	66.67	2.00e-82	298.00
IUUC-Opr-070573	Ochotona princeps	51.91	0.00e+00	705.00
IUUC-Ont-071389	Oreochromis niloticus	54.95	3.00e-63	234.00
IUUC-Ocu-074404	Oryctolagus cuniculus	53.02	0.00e+00	762.00
IUUC-Ola-087174	Oryzias latipes	57.06	3.00e-55	207.00
IUUC-Oga-088174	Otolemur garnettii	52.98	0.00e+00	664.00
IUUC-Oar-089488	Ovis aries	50.63	0.00e+00	662.00
IUUC-Ptr-091454	Pan troglodytes	57.73	0.00e+00	850.00
IUUC-Pan-092016	Papio anubis	59.20	0.00e+00	854.00
IUUC-Psi-093616	Pelodiscus sinensis	41.60	2.00e-104	372.00
IUUC-Pma-094722	Petromyzon marinus	57.89	2.00e-62	231.00
IUUC-Ppa-095323	Physcomitrella patens	47.69	1.00e-51	197.00
IUUC-Pfo-097512	Poecilia formosa	53.77	4.00e-62	230.00
IUUC-Pab-098106	Pongo abelii	56.39	0.00e+00	822.00
IUUC-Pva-103155	Pteropus vampyrus	50.98	0.00e+00	652.00
IUUC-Sha-107310	Sarcophilus harrisii	40.93	7.00e-148	517.00
IUUC-Smo-108775	Selaginella moellendorffii	45.70	7.00e-47	179.00
IUUC-Sar-113237	Sorex araneus	54.36	3.00e-120	425.00
IUUC-Ssc-115952	Sus scrofa	56.63	2.00e-156	546.00
IUUC-Tgu-117018	Taeniopygia guttata	38.89	3.00e-112	399.00
IUUC-Tsy-119396	Tarsius syrichta	50.92	3.00e-143	501.00
IUUC-Tbe-127250	Tupaia belangeri	51.63	1.00e-164	573.00
IUUC-Ttr-128283	Tursiops truncatus	52.58	0.00e+00	742.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence