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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Rno-105692
Ensembl Protein ID ENSRNOP00000052823.4
UniProt Accession E9PU01; E9PU01_RAT
Genbank Protein ID ENSRNOP00000052823
Protein Name Chromodomain helicase DNA-binding protein 4
Genbank Nucleotide ID AC115415
Gene Name Chd4
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000018309.7 ENSRNOT00000055970.4 ENSRNOP00000052823.4
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
TRANSFACRAID2
Post-translational Modifications (PTMs)
CPLMdbPAFPhosphositePlus
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 activity/RING/PHD 3.60e-16 59.5 443 487
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 activity/RING/PHD
   S: 2    kvClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCr 52
           ++C vC++gge    l++C+ C + +H +Cl+++  +e pn e w Cp+C+
   Q: 443  EFCRVCKDGGE----LLCCDTCPSSYHIHCLNPP-LPEIPNGE-WLCPRCT 487
           58*********....*******************.*******8.******6 PP
   
Organism Rattus norvegicus
Protein Sequence
(Fasta)
MASGLGSPSP CSAGSEEEDM DALLNNSLPP PHPENEDDPE EDLSEAETPK LKKKKKPKKP 60
RDPKIPKSKR QKKELGDSSG EGPEFVEEDE EAALRSDSEG SDYTPGKKKK KKLGPKKEKK 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Rno-105692|E3,PHD|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
TGCGGTGGGA TTTCCCGGCC GGTGTTTCGG GCCCTTTAAG AGGCGACGCC GGAGCCGGAG 60
CCATTTTCCC CCCTTCGGCC GCGGCGAGGA GGAGCCGGAG CGGGAGTGAC ACCGGCGAGA 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Rno-105692|E3,PHD|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger
Interpro

IPR028725--CHD4
IPR012957--CHD_C2
IPR012958--CHD_N
IPR000953--Chromo/chromo_shadow_dom
IPR023780--Chromo_domain
IPR016197--Chromodomain-like
IPR002464--DNA/RNA_helicase_DEAH_CS
IPR009462--DUF1086
IPR009463--DUF1087
IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR027417--P-loop_NTPase
IPR000330--SNF2_N
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD
PROSITE

PS50013--CHROMO_2
PS00690--DEAH_ATP_HELICASE
PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2
Pfam

PF08074--CHDCT2
PF08073--CHDNT
PF00385--Chromo
PF06461--DUF1086
PF06465--DUF1087
PF00271--Helicase_C
PF00628--PHD
PF00176--SNF2_N
SMART

SM00298--CHROMO
SM00487--DEXDc
SM01146--DUF1086
SM01147--DUF1087
SM00490--HELICc
SM00249--PHD
Gene Ontology

GO:0005813--C:centrosome
GO:0005737--C:cytoplasm
GO:0016020--C:membrane
GO:0000790--C:nuclear chromatin
GO:0016581--C:NuRD complex
GO:0032993--C:protein-DNA complex
GO:0005524--F:ATP binding
GO:0008026--F:ATP-dependent helicase activity
GO:0031492--F:nucleosomal DNA binding
GO:0000978--F:RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980--F:RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0008270--F:zinc ion binding
GO:0043044--P:ATP-dependent chromatin remodeling
GO:0000122--P:negative regulation of transcription from RNA polymerase II promoter
GO:0051225--P:spindle assembly
GO:0072553--P:terminal button organization
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001361 Ailuropoda melanoleuca 95.06 0.00e+00 2935.00
IUUC-Apl-004175 Anas platyrhynchos 96.50 0.00e+00 2281.00
IUUC-Aca-004774 Anolis carolinensis 89.07 0.00e+00 2805.00
IUUC-Bta-013220 Bos taurus 96.82 0.00e+00 2886.00
IUUC-Cel-018683 Caenorhabditis elegans 57.61 0.00e+00 1276.00
IUUC-Cja-019510 Callithrix jacchus 89.94 0.00e+00 2589.00
IUUC-Cfa-020422 Canis familiaris 97.18 0.00e+00 2910.00
IUUC-Cpo-021704 Cavia porcellus 96.08 0.00e+00 2864.00
IUUC-Csa-023625 Chlorocebus sabaeus 97.39 0.00e+00 2904.00
IUUC-Cho-024361 Choloepus hoffmanni 91.07 0.00e+00 1453.00
IUUC-Dno-029656 Dasypus novemcinctus 96.82 0.00e+00 2882.00
IUUC-Dor-030354 Dipodomys ordii 95.52 0.00e+00 1879.00
IUUC-Eca-034112 Equus caballus 97.08 0.00e+00 2908.00
IUUC-Fca-036056 Felis catus 97.49 0.00e+00 2909.00
IUUC-Fal-037312 Ficedula albicollis 94.12 0.00e+00 2319.00
IUUC-Gga-040216 Gallus gallus 91.38 0.00e+00 2810.00
IUUC-Gac-042478 Gasterosteus aculeatus 77.59 0.00e+00 2018.00
IUUC-Ggo-044428 Gorilla gorilla 89.08 0.00e+00 2548.00
IUUC-Hsa-045908 Homo sapiens 95.22 0.00e+00 2911.00
IUUC-Itr-048002 Ictidomys tridecemlineatus 97.28 0.00e+00 2902.00
IUUC-Lch-049948 Latimeria chalumnae 78.80 0.00e+00 1930.00
IUUC-Loc-052144 Lepisosteus oculatus 85.25 0.00e+00 2113.00
IUUC-Mcc-055773 Macaca mulatta 95.47 0.00e+00 2894.00
IUUC-Mga-059633 Meleagris gallopavo 91.50 0.00e+00 2813.00
IUUC-Mmr-060886 Microcebus murinus 95.63 0.00e+00 2910.00
IUUC-Mdo-062872 Monodelphis domestica 94.45 0.00e+00 2599.00
IUUC-Mmu-063672 Mus musculus 99.12 0.00e+00 2433.00
IUUC-Mpu-066692 Mustela putorius furo 97.44 0.00e+00 2909.00
IUUC-Mlu-067785 Myotis lucifugus 97.23 0.00e+00 2901.00
IUUC-Nle-070039 Nomascus leucogenys 95.15 0.00e+00 2849.00
IUUC-Ont-072418 Oreochromis niloticus 82.57 0.00e+00 2118.00
IUUC-Ocu-074177 Oryctolagus cuniculus 94.46 0.00e+00 2900.00
IUUC-Ola-086880 Oryzias latipes 81.38 0.00e+00 2169.00
IUUC-Oga-088970 Otolemur garnettii 95.58 0.00e+00 2904.00
IUUC-Oar-090422 Ovis aries 95.36 0.00e+00 2825.00
IUUC-Pan-092441 Papio anubis 97.29 0.00e+00 2905.00
IUUC-Psi-093530 Pelodiscus sinensis 94.80 0.00e+00 2348.00
IUUC-Ppa-095213 Physcomitrella patens 41.95 0.00e+00 726.00
IUUC-Pfo-097530 Poecilia formosa 82.56 0.00e+00 2106.00
IUUC-Pab-097959 Pongo abelii 94.87 0.00e+00 2825.00
IUUC-Pva-103186 Pteropus vampyrus 95.47 0.00e+00 2822.00
IUUC-Ssc-115295 Sus scrofa 97.23 0.00e+00 2878.00
IUUC-Tgu-117484 Taeniopygia guttata 89.65 0.00e+00 2805.00
IUUC-Tsy-119261 Tarsius syrichta 85.37 0.00e+00 1996.00
IUUC-Ttr-128478 Tursiops truncatus 91.36 0.00e+00 2674.00
Created Date 25-Jun-2017

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