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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Rno-105569
Ensembl Protein ID ENSRNOP00000074265.1
UniProt Accession A0A0G2K7M2; A0A0G2K7M2_RAT
Genbank Protein ID ENSRNOP00000074265
Protein Name RAD23 homolog A, nucleotide excision repair protein
Genbank Nucleotide ID AABR07072634
Gene Name Rad23a
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000003026.7 ENSRNOT00000004042.5 ENSRNOP00000004042.4
ENSRNOG00000003026.7 ENSRNOT00000084123.1 ENSRNOP00000074265.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
microRNARAID2
Post-translational Modifications (PTMs)
dbPAF
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
UBD/Alpha-Helix/UBA 8.50e-21 73.8 162 201
ULD/UDP/UBQ/UBQ_PIM 8.70e-26 90.1 3 80
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   UBD/Alpha-Helix/UBA
   S: 2    ededkleqlveMGFdreealqaLraannnleaAveyLldg 41
           e+e +l ++++MG++re+++ aLra++nn+ +AveyLl+g
   Q: 162  EYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTG 201
           7899**********************************97 PP
   

   ULD/UDP/UBQ/UBQ_PIM
   S: 1    mkltvktlkgkefelevseddtveelKekiakesg...vppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkksk 75
           +++t+ktl++++f++++++d+tv+ lKeki++e+g   +p++ qkLIyaGkiL+Dd +++e++i+++++v+++v+k+k
   Q: 3    VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGrdaFPVAGQKLIYAGKILSDDIPIKEYHIDEKNFVVVMVTKAK 80
           68*************************************************************************987 PP
   
Organism Rattus norvegicus
Protein Sequence
(Fasta)
MAVTITLKTL QQQTFKIRME PDETVKVLKE KIEAEKGRDA FPVAGQKLIY AGKILSDDIP 60
IKEYHIDEKN FVVVMVTKAK AGQGTPAPPE ASPTAAPEPS TPFPPAPASG MSHPPPSNRE 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Rno-105569|UBD,UBA;ULD,UBQ_PIM|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CGGCTGGGCG CTAAGATGGC GGCGGCGTGA GTTGCATGTT GTGCGAGGAT CCCGGGGCTG 60
CCGCATTGCT CCGGCCCCGC CATGGCCGTC ACCATCACAC TTAAAACGTT GCAGCAGCAG 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Rno-105569|UBD,UBA;ULD,UBQ_PIM|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
Interpro

IPR004806--Rad23
IPR006636--STI1_HS-bd
IPR015940--UBA
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR015360--XPC-bd
PROSITE

PS50030--UBA
PS50053--UBIQUITIN_2
Pfam

PF00627--UBA
PF00240--ubiquitin
PF09280--XPC-binding
PRINTS

PR01839--RAD23PROTEIN
SMART

SM00727--STI1
SM00165--UBA
SM00213--UBQ
Gene Ontology

GO:0005829--C:cytosol
GO:0005815--C:microtubule organizing center
GO:0005654--C:nucleoplasm
GO:0003684--F:damaged DNA binding
GO:0006289--P:nucleotide-excision repair
GO:0045070--P:positive regulation of viral genome replication
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0032434--P:regulation of proteasomal ubiquitin-dependent protein catabolic process
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000770 Aegilops tauschii 38.52 1.00e-32 134.00
IUUC-Aml-001515 Ailuropoda melanoleuca 89.69 1.00e-139 489.00
IUUC-Atr-002756 Amborella trichopoda 35.82 2.00e-47 183.00
IUUC-Aca-004704 Anolis carolinensis 80.06 2.00e-114 405.00
IUUC-Aly-006159 Arabidopsis lyrata 34.41 2.00e-49 189.00
IUUC-Ago-007830 Ashbya gossypii 26.60 2.00e-14 73.60
IUUC-Acl-008212 Aspergillus clavatus 36.15 2.00e-24 106.00
IUUC-Afl-008605 Aspergillus flavus 45.57 7.00e-19 88.60
IUUC-Ani-009460 Aspergillus nidulans 38.80 5.00e-29 122.00
IUUC-Aor-010032 Aspergillus oryzae 45.57 1.00e-18 87.40
IUUC-Bgr-012056 Blumeria graminis 35.15 3.00e-22 99.00
IUUC-Bta-012377 Bos taurus 93.09 3.00e-147 514.00
IUUC-Bol-015272 Brassica oleracea 33.83 3.00e-50 192.00
IUUC-Bra-016970 Brassica rapa 34.10 7.00e-49 187.00
IUUC-Cel-018364 Caenorhabditis elegans 30.54 1.00e-27 116.00
IUUC-Cja-018946 Callithrix jacchus 93.66 3.00e-142 497.00
IUUC-Cfa-020577 Canis familiaris 94.20 1.00e-152 532.00
IUUC-Cpo-021850 Cavia porcellus 91.99 1.00e-168 585.00
IUUC-Csa-023183 Chlorocebus sabaeus 94.77 4.00e-150 523.00
IUUC-Dno-030017 Dasypus novemcinctus 90.65 2.00e-128 452.00
IUUC-Dor-030358 Dipodomys ordii 84.34 8.00e-126 443.00
IUUC-Eca-033599 Equus caballus 90.27 6.00e-131 460.00
IUUC-Fca-036051 Felis catus 93.37 1.00e-150 525.00
IUUC-Fox-037960 Fusarium oxysporum 48.51 4.00e-15 75.90
IUUC-Fso-038107 Fusarium solani 38.31 3.00e-24 105.00
IUUC-Gmo-038528 Gadus morhua 58.56 2.00e-90 325.00
IUUC-Ggr-040116 Gaeumannomyces graminis 50.50 2.00e-15 77.00
IUUC-Gga-040133 Gallus gallus 87.85 4.00e-76 278.00
IUUC-Gac-042239 Gasterosteus aculeatus 55.47 5.00e-87 314.00
IUUC-Ggo-045084 Gorilla gorilla 95.04 6.00e-150 523.00
IUUC-Hsa-046614 Homo sapiens 95.04 1.00e-150 526.00
IUUC-Itr-047875 Ictidomys tridecemlineatus 94.77 8.00e-169 586.00
IUUC-Lch-050563 Latimeria chalumnae 62.31 6.00e-103 367.00
IUUC-Loc-051758 Lepisosteus oculatus 61.24 7.00e-86 310.00
IUUC-Laf-054589 Loxodonta africana 93.66 4.00e-141 494.00
IUUC-Mcc-055860 Macaca mulatta 94.77 4.00e-150 523.00
IUUC-Meu-056459 Macropus eugenii 94.42 1.00e-104 372.00
IUUC-Mmr-060819 Microcebus murinus 94.48 6.00e-165 573.00
IUUC-Mdo-062742 Monodelphis domestica 85.23 7.00e-147 513.00
IUUC-Mmu-063929 Mus musculus 96.97 5.00e-169 587.00
IUUC-Mac-064724 Musa acuminata 33.09 2.00e-44 173.00
IUUC-Mpu-066684 Mustela putorius furo 93.94 1.00e-152 532.00
IUUC-Mlu-067787 Myotis lucifugus 92.01 4.00e-147 514.00
IUUC-Nle-069846 Nomascus leucogenys 83.88 6.00e-131 460.00
IUUC-Oan-073572 Ornithorhynchus anatinus 79.28 6.00e-131 460.00
IUUC-Ocu-074968 Oryctolagus cuniculus 92.40 2.00e-104 373.00
IUUC-Oga-089075 Otolemur garnettii 94.20 1.00e-148 519.00
IUUC-Oar-090387 Ovis aries 92.29 4.00e-141 494.00
IUUC-Ptr-090912 Pan troglodytes 91.46 5.00e-140 490.00
IUUC-Pan-092140 Papio anubis 94.77 2.00e-149 521.00
IUUC-Psi-093347 Pelodiscus sinensis 87.43 2.00e-63 236.00
IUUC-Pno-095064 Phaeosphaeria nodorum 38.19 4.00e-17 82.40
IUUC-Ppa-095654 Physcomitrella patens 41.22 3.00e-36 145.00
IUUC-Pfo-096607 Poecilia formosa 62.99 1.00e-95 343.00
IUUC-Pab-097738 Pongo abelii 91.18 2.00e-143 501.00
IUUC-Pop-099642 Populus trichocarpa 35.50 4.00e-51 195.00
IUUC-Pca-100348 Procavia capensis 90.93 1.00e-139 489.00
IUUC-Pva-102412 Pteropus vampyrus 93.39 1.00e-150 525.00
IUUC-Pgr-103618 Puccinia graminis 36.68 6.00e-25 108.00
IUUC-Sha-106918 Sarcophilus harrisii 86.26 4.00e-134 471.00
IUUC-Sja-107851 Schizosaccharomyces japonicus 35.81 6.00e-45 174.00
IUUC-Spo-108298 Schizosaccharomyces pombe 40.33 3.00e-37 149.00
IUUC-Smo-109129 Selaginella moellendorffii 38.40 7.00e-33 134.00
IUUC-Sit-109813 Setaria italica 34.11 2.00e-44 172.00
IUUC-Sly-111480 Solanum lycopersicum 37.03 6.00e-54 204.00
IUUC-Stu-112054 Solanum tuberosum 36.50 8.00e-51 194.00
IUUC-Ssc-115460 Sus scrofa 93.11 9.00e-150 523.00
IUUC-Tsy-119385 Tarsius syrichta 77.21 3.00e-67 247.00
IUUC-Tca-121594 Theobroma cacao 35.26 2.00e-50 193.00
IUUC-Tre-121911 Trichoderma reesei 50.50 9.00e-16 77.80
IUUC-Tur-126610 Triticum urartu 38.52 6.00e-33 135.00
IUUC-Tbe-127603 Tupaia belangeri 84.67 6.00e-55 207.00
IUUC-Ttr-129232 Tursiops truncatus 85.95 4.00e-144 504.00
IUUC-Xma-133647 Xiphophorus maculatus 63.66 1.00e-92 333.00
Created Date 25-Jun-2017

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