iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099561

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Zinc finger family protein

Genbank Nucleotide ID

CM000339

Gene Name

POPTRDRAFT_817505; POPTR_0003s16080g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0003s16080	POPTR_0003s16080.1	POPTR_0003s16080.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	1.10e-08	36.2	131	177
E3 activity/RING/RING	4.60e-13	50.6	135	174

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 4    eeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqpl 50
           +e+ C+  +++   Pv++p+G+ +  ++ ++w+ +g++tc  +r ++
   Q: 131  KELTCSFCMQMLDRPVTTPCGHNFCLKCFQRWIGQGKRTCAYCRVQI 177
           5889************************************9999876 PP

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C++C++++++ p+++pCgH f+++C+q+w       +++ +C +Cr
   Q: 135  CSFCMQMLDR-PVTTPCGHNFCLKCFQRW-----IGQGKRTCAYCR 174
           **********.9*****************.....699999*****8 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MELPCDGAGI CMVCKNKPPS EETLACKTCV TPWHATCLVS PPQALSDTLQ WECPDCSMIH 60
PPSTSAFASG RSEDSGDLIA SIRKIEDDKS LTEQEKAKKR QELLSGAAAG PSSLDGEEKK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGAACTCC CGTGCGACGG AGCCGGCATT TGCATGGTCT GCAAAAACAA GCCACCAAGT 60
GAAGAGACCC TCGCGTGCAA AACATGTGTC ACCCCCTGGC ACGCCACGTG TCTCGTCTCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR015947--PUA-like_domain
IPR003105--SRA_YDG
IPR019786--Zinc_finger_PHD-type_CS
IPR027370--Znf-RING_LisH
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS51015--YDG
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2
PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF02182--SAD_SRA
PF13445--zf-RING_UBOX

SMART

SM00249--PHD
SM00184--RING
SM00466--SRA

Gene Ontology

GO:0005720--C:nuclear heterochromatin
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0010216--P:maintenance of DNA methylation
GO:0016567--P:protein ubiquitination
GO:0090308--P:regulation of methylation-dependent chromatin silencing

KEGG

pop:POPTR_0003s16080g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000242	Aegilops tauschii	71.94	1.00e-171	595.00
IUUC-Atr-002603	Amborella trichopoda	68.60	0.00e+00	851.00
IUUC-Aca-005287	Anolis carolinensis	35.09	6.00e-49	188.00
IUUC-Aly-006276	Arabidopsis lyrata	68.46	0.00e+00	838.00
IUUC-Ath-006667	Arabidopsis thaliana	66.44	0.00e+00	813.00
IUUC-Ani-009293	Aspergillus nidulans	46.15	1.00e-04	41.60
IUUC-Ame-011845	Astyanax mexicanus	35.63	1.00e-50	194.00
IUUC-Bta-012600	Bos taurus	35.63	2.00e-51	197.00
IUUC-Bci-013703	Botrytis cinerea	30.12	6.00e-09	55.10
IUUC-Bdi-014586	Brachypodium distachyon	65.49	0.00e+00	762.00
IUUC-Bol-015519	Brassica oleracea	70.62	0.00e+00	848.00
IUUC-Bra-017110	Brassica rapa	70.62	0.00e+00	848.00
IUUC-Cel-018370	Caenorhabditis elegans	29.81	1.00e-08	53.50
IUUC-Cpo-022125	Cavia porcellus	36.07	2.00e-53	203.00
IUUC-Cre-022645	Chlamydomonas reinhardtii	34.89	2.00e-85	310.00
IUUC-Cgl-026498	Colletotrichum gloeosporioides	28.92	3.00e-12	66.20
IUUC-Cne-026942	Cryptococcus neoformans	49.36	9.00e-31	125.00
IUUC-Dre-028200	Danio rerio	36.14	5.00e-51	195.00
IUUC-Dno-029523	Dasypus novemcinctus	48.06	5.00e-44	172.00
IUUC-Dor-031084	Dipodomys ordii	34.79	9.00e-52	197.00
IUUC-Dse-031398	Dothistroma septosporum	35.14	1.00e-09	57.80
IUUC-Dme-031618	Drosophila melanogaster	36.36	4.00e-07	48.50
IUUC-Ete-032375	Echinops telfairi	26.15	1.00e-09	58.20
IUUC-Gmo-039452	Gadus morhua	34.98	2.00e-48	187.00
IUUC-Ggr-039874	Gaeumannomyces graminis	31.29	3.00e-09	56.20
IUUC-Gga-040484	Gallus gallus	36.50	1.00e-52	201.00
IUUC-Gac-042196	Gasterosteus aculeatus	36.62	4.00e-51	196.00
IUUC-Gma-044194	Glycine max	66.20	0.00e+00	850.00
IUUC-Ggo-045414	Gorilla gorilla	48.54	4.00e-45	176.00
IUUC-Hsa-046236	Homo sapiens	48.54	4.00e-45	176.00
IUUC-Hvu-047471	Hordeum vulgare	70.72	0.00e+00	667.00
IUUC-Itr-047867	Ictidomys tridecemlineatus	49.03	1.00e-44	174.00
IUUC-Lch-050162	Latimeria chalumnae	35.94	1.00e-48	187.00
IUUC-Lpe-050756	Leersia perrieri	62.56	0.00e+00	791.00
IUUC-Loc-051806	Lepisosteus oculatus	35.78	3.00e-50	193.00
IUUC-Lma-052953	Leptosphaeria maculans	29.23	4.00e-09	55.80
IUUC-Laf-053529	Loxodonta africana	32.50	3.00e-45	176.00
IUUC-Mcc-055513	Macaca mulatta	47.44	2.00e-44	173.00
IUUC-Meu-056189	Macropus eugenii	51.64	5.00e-27	115.00
IUUC-Mpo-057318	Magnaporthe poae	31.30	2.00e-07	50.10
IUUC-Mtr-058805	Medicago truncatula	68.47	0.00e+00	843.00
IUUC-Mga-059759	Meleagris gallopavo	35.54	4.00e-51	195.00
IUUC-Mvi-060378	Microbotryum violaceum	51.61	3.00e-31	128.00
IUUC-Mdo-062659	Monodelphis domestica	33.73	3.00e-49	189.00
IUUC-Mmu-063738	Mus musculus	35.98	3.00e-51	196.00
IUUC-Mac-064697	Musa acuminata	60.81	0.00e+00	819.00
IUUC-Mlu-067256	Myotis lucifugus	44.44	8.00e-40	158.00
IUUC-Ncr-068942	Neurospora crassa	27.70	9.00e-07	47.80
IUUC-Opr-070813	Ochotona princeps	52.94	5.00e-11	62.40
IUUC-Ont-072292	Oreochromis niloticus	34.98	1.00e-48	187.00
IUUC-Oan-073109	Ornithorhynchus anatinus	34.25	1.00e-47	183.00
IUUC-Ocu-074748	Oryctolagus cuniculus	32.90	3.00e-45	176.00
IUUC-Oba-075108	Oryza barthii	64.11	0.00e+00	802.00
IUUC-Obr-076572	Oryza brachyantha	63.56	0.00e+00	781.00
IUUC-Ogl-077177	Oryza glaberrima	64.11	0.00e+00	802.00
IUUC-Ogu-078298	Oryza glumaepatula	64.11	0.00e+00	802.00
IUUC-Oin-079911	Oryza indica	64.11	0.00e+00	802.00
IUUC-Olo-080527	Oryza longistaminata	59.43	0.00e+00	715.00
IUUC-Ome-081137	Oryza meridionalis	61.83	0.00e+00	758.00
IUUC-Oni-082620	Oryza nivara	64.11	0.00e+00	802.00
IUUC-Opu-083974	Oryza punctata	62.78	0.00e+00	796.00
IUUC-Oru-084976	Oryza rufipogon	64.11	0.00e+00	802.00
IUUC-Osa-085339	Oryza sativa	64.11	0.00e+00	802.00
IUUC-Olu-087666	Ostreococcus lucimarinus	31.88	6.00e-07	48.50
IUUC-Ptr-090559	Pan troglodytes	48.54	4.00e-45	176.00
IUUC-Pan-092855	Papio anubis	47.44	2.00e-44	173.00
IUUC-Psi-093033	Pelodiscus sinensis	47.66	1.00e-44	174.00
IUUC-Ppa-095189	Physcomitrella patens	57.84	0.00e+00	736.00
IUUC-Pfo-096243	Poecilia formosa	49.03	1.00e-43	171.00
IUUC-Ppe-101961	Prunus persica	72.17	0.00e+00	881.00
IUUC-Pgr-103644	Puccinia graminis	52.03	7.00e-39	154.00
IUUC-Ptt-103867	Puccinia triticina	51.92	6.00e-41	161.00
IUUC-Pyt-104740	Pyrenophora triticirepentis	28.19	2.00e-13	70.90
IUUC-Rno-105345	Rattus norvegicus	35.82	6.00e-51	195.00
IUUC-Sce-106362	Saccharomyces cerevisiae	34.25	7.00e-08	51.20
IUUC-Smo-109319	Selaginella moellendorffii	54.88	0.00e+00	655.00
IUUC-Sit-110588	Setaria italica	60.60	0.00e+00	799.00
IUUC-Sly-111415	Solanum lycopersicum	67.90	0.00e+00	899.00
IUUC-Stu-112842	Solanum tuberosum	65.83	0.00e+00	886.00
IUUC-Sar-113546	Sorex araneus	47.20	8.00e-23	102.00
IUUC-Sbi-114726	Sorghum bicolor	64.51	0.00e+00	772.00
IUUC-Ssc-116081	Sus scrofa	33.49	4.00e-49	189.00
IUUC-Tgu-116538	Taeniopygia guttata	49.51	3.00e-45	176.00
IUUC-Tru-117599	Takifugu rubripes	36.16	3.00e-49	189.00
IUUC-Tsy-119249	Tarsius syrichta	33.42	7.00e-46	178.00
IUUC-Tni-119843	Tetraodon nigroviridis	37.37	1.00e-51	197.00
IUUC-Tca-121785	Theobroma cacao	72.56	0.00e+00	936.00
IUUC-Tae-125473	Triticum aestivum	64.57	0.00e+00	732.00
IUUC-Tme-127149	Tuber melanosporum	46.20	5.00e-25	108.00
IUUC-Tbe-127823	Tupaia belangeri	31.39	4.00e-38	152.00
IUUC-Ttr-128522	Tursiops truncatus	34.38	1.00e-45	177.00
IUUC-Vpa-130073	Vicugna pacos	33.08	1.00e-45	177.00
IUUC-Vvi-131413	Vitis vinifera	69.10	0.00e+00	937.00
IUUC-Xtr-132432	Xenopus tropicalis	35.85	2.00e-51	197.00
IUUC-Xma-133516	Xiphophorus maculatus	35.44	6.00e-50	192.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence