iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Gga-040544

Ensembl Protein ID

ENSGALP00000025005.5

UniProt Accession

F1N9B7; F1N9B7_CHICK

Genbank Protein ID

ENSGALP00000025005

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

AC188815

Gene Name

RAD23B

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSGALG00000015540.5	ENSGALT00000025051.5	ENSGALP00000025005.5

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/UBA	1.80e-19	69.6	168	205
ULD/UDP/UBQ/UBQ_PIM	2.30e-18	66.3	3	60

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 3    dedkleqlveMGFdreealqaLraannnleaAveyLld 40
           +e ++ ++++MG++re+++ aLra++nn+++AveyLl 
   Q: 168  YENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLM 205
           5789********************************95 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 21   dtveelKekiakesg...vppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkksk 75
           d v++lKeki++e+g   +p++ qkLIyaGkiL+Ddt L+e++i+++++v+++v+k+k
   Q: 3    DLVKALKEKIESERGkdaFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 60
           679****************************************************997 PP

Organism

Gallus gallus

Protein Sequence
(Fasta)

MEDLVKALKE KIESERGKDA FPVAGQKLIY AGKILNDDTA LKEYKIDEKN FVVVMVTKPK 60
AATAATTATQ QTNSTTGVSV TTAAPTPVSA PTPAAAPVPA PDPTTPAPAA VACESEPVST 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTTCTGTGCT GTTAGCCCTA ACATCCTCAC TGTCAGAAAG GGGAGAAATG GAAGATTTGG 60
TATGTAAAGA AAACTTTGCT AGTCTCATCC TTGTACAGTA GGCTTTCACA CTGAGCTTTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR004806--Rad23
IPR006636--STI1_HS-bd
IPR015940--UBA
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR015360--XPC-bd

PROSITE

PS50030--UBA
PS50053--UBIQUITIN_2

Pfam

PF00627--UBA
PF00240--ubiquitin
PF09280--XPC-binding

PRINTS

PR01839--RAD23PROTEIN

SMART

SM00727--STI1
SM00165--UBA
SM00213--UBQ

Gene Ontology

GO:0005829--C:cytosol
GO:0005654--C:nucleoplasm
GO:0071942--C:XPC complex
GO:0003684--F:damaged DNA binding
GO:0000715--P:nucleotide-excision repair, DNA damage recognition
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0032434--P:regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0007283--P:spermatogenesis

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000126	Aegilops tauschii	39.37	3.00e-21	95.90
IUUC-Aml-001195	Ailuropoda melanoleuca	80.72	3.00e-84	305.00
IUUC-Atr-003116	Amborella trichopoda	37.98	5.00e-34	138.00
IUUC-Apl-003371	Anas platyrhynchos	90.93	3.00e-140	491.00
IUUC-Aca-004599	Anolis carolinensis	77.16	8.00e-88	317.00
IUUC-Aly-006159	Arabidopsis lyrata	34.18	8.00e-51	194.00
IUUC-Ath-006688	Arabidopsis thaliana	37.55	1.00e-39	156.00
IUUC-Acl-008212	Aspergillus clavatus	47.06	4.00e-20	92.00
IUUC-Afl-008605	Aspergillus flavus	44.78	5.00e-19	88.60
IUUC-Afu-008877	Aspergillus fumigatus	46.32	9.00e-20	90.90
IUUC-Ani-009460	Aspergillus nidulans	39.37	6.00e-34	137.00
IUUC-Aor-010032	Aspergillus oryzae	44.78	8.00e-19	87.80
IUUC-Ate-010458	Aspergillus terreus	40.64	9.00e-30	124.00
IUUC-Bta-012922	Bos taurus	80.90	2.00e-85	309.00
IUUC-Bdi-014452	Brachypodium distachyon	29.78	1.00e-43	169.00
IUUC-Bol-015641	Brassica oleracea	37.74	5.00e-41	161.00
IUUC-Cja-018772	Callithrix jacchus	82.09	4.00e-91	328.00
IUUC-Cfa-020683	Canis familiaris	79.03	1.00e-90	326.00
IUUC-Cpo-022145	Cavia porcellus	81.78	2.00e-90	325.00
IUUC-Cre-022810	Chlamydomonas reinhardtii	38.14	8.00e-31	127.00
IUUC-Csa-023714	Chlorocebus sabaeus	71.68	4.00e-119	421.00
IUUC-Cho-024814	Choloepus hoffmanni	63.67	9.00e-71	260.00
IUUC-Cin-025741	Ciona intestinalis	43.78	2.00e-39	155.00
IUUC-Cme-027260	Cyanidioschyzon merolae	27.50	2.00e-23	103.00
IUUC-Dre-028369	Danio rerio	68.25	3.00e-80	291.00
IUUC-Dno-029543	Dasypus novemcinctus	82.09	2.00e-90	325.00
IUUC-Dse-031336	Dothistroma septosporum	50.38	1.00e-19	90.50
IUUC-Dme-032027	Drosophila melanogaster	36.26	1.00e-56	213.00
IUUC-Ete-032583	Echinops telfairi	71.31	9.00e-58	217.00
IUUC-Eca-034243	Equus caballus	84.32	2.00e-84	305.00
IUUC-Eeu-034721	Erinaceus europaeus	80.18	2.00e-67	248.00
IUUC-Fca-035679	Felis catus	80.52	4.00e-88	317.00
IUUC-Fal-037148	Ficedula albicollis	85.19	1.00e-134	473.00
IUUC-Gmo-039080	Gadus morhua	60.16	2.00e-60	225.00
IUUC-Ggr-040116	Gaeumannomyces graminis	46.32	2.00e-17	83.60
IUUC-Gac-042239	Gasterosteus aculeatus	54.45	2.00e-88	318.00
IUUC-Gma-044245	Glycine max	34.09	5.00e-52	197.00
IUUC-Ggo-045125	Gorilla gorilla	82.14	4.00e-90	324.00
IUUC-Hsa-046519	Homo sapiens	82.14	4.00e-90	324.00
IUUC-Itr-048295	Ictidomys tridecemlineatus	81.34	2.00e-81	295.00
IUUC-Kpa-049314	Komagataella pastoris	36.17	5.00e-32	131.00
IUUC-Lch-050553	Latimeria chalumnae	73.13	1.00e-74	273.00
IUUC-Lpe-051087	Leersia perrieri	37.55	2.00e-35	142.00
IUUC-Loc-051748	Lepisosteus oculatus	64.44	2.00e-71	262.00
IUUC-Laf-054293	Loxodonta africana	80.97	3.00e-89	322.00
IUUC-Mcc-055600	Macaca mulatta	81.34	1.00e-96	345.00
IUUC-Meu-056082	Macropus eugenii	62.45	2.00e-69	255.00
IUUC-Mpo-057609	Magnaporthe poae	46.56	6.00e-17	81.30
IUUC-Mla-058961	Melampsora laricipopulina	44.44	6.00e-25	108.00
IUUC-Mga-060060	Meleagris gallopavo	57.76	7.00e-37	147.00
IUUC-Mvi-060220	Microbotryum violaceum	45.19	1.00e-21	97.40
IUUC-Mmr-061759	Microcebus murinus	79.85	8.00e-85	306.00
IUUC-Mdo-061967	Monodelphis domestica	81.65	7.00e-81	293.00
IUUC-Mmu-063258	Mus musculus	80.44	2.00e-97	348.00
IUUC-Mac-064724	Musa acuminata	36.90	8.00e-43	167.00
IUUC-Mpu-066389	Mustela putorius furo	79.92	2.00e-84	305.00
IUUC-Mlu-067999	Myotis lucifugus	80.52	5.00e-89	320.00
IUUC-Nfi-068390	Neosartorya fischeri	46.32	9.00e-20	90.90
IUUC-Ncr-068685	Neurospora crassa	36.54	2.00e-35	142.00
IUUC-Nle-069655	Nomascus leucogenys	81.34	5.00e-97	347.00
IUUC-Opr-070234	Ochotona princeps	98.21	9.00e-27	114.00
IUUC-Ont-072484	Oreochromis niloticus	56.35	3.00e-94	338.00
IUUC-Ocu-074831	Oryctolagus cuniculus	80.60	2.00e-88	318.00
IUUC-Ogl-077067	Oryza glaberrima	33.09	3.00e-48	185.00
IUUC-Ogu-078883	Oryza glumaepatula	35.97	4.00e-34	139.00
IUUC-Ome-081866	Oryza meridionalis	35.97	3.00e-34	139.00
IUUC-Opu-083756	Oryza punctata	36.90	2.00e-34	139.00
IUUC-Ola-086540	Oryzias latipes	61.79	2.00e-65	242.00
IUUC-Olu-087843	Ostreococcus lucimarinus	43.42	3.00e-42	165.00
IUUC-Oga-088023	Otolemur garnettii	81.48	1.00e-90	326.00
IUUC-Oar-089964	Ovis aries	80.15	2.00e-84	305.00
IUUC-Ptr-091165	Pan troglodytes	82.14	7.00e-90	323.00
IUUC-Pan-092009	Papio anubis	80.07	5.00e-95	340.00
IUUC-Psi-093477	Pelodiscus sinensis	79.04	1.00e-81	296.00
IUUC-Ppa-095964	Physcomitrella patens	42.96	5.00e-28	118.00
IUUC-Pfo-097385	Poecilia formosa	62.61	3.00e-71	261.00
IUUC-Pab-097868	Pongo abelii	82.14	3.00e-89	321.00
IUUC-Pop-099642	Populus trichocarpa	37.84	3.00e-41	162.00
IUUC-Pca-100652	Procavia capensis	80.20	6.00e-61	227.00
IUUC-Ppe-101830	Prunus persica	33.92	4.00e-46	178.00
IUUC-Pva-102137	Pteropus vampyrus	84.02	6.00e-89	320.00
IUUC-Pgr-103618	Puccinia graminis	36.80	1.00e-26	113.00
IUUC-Ptt-103717	Puccinia triticina	46.76	2.00e-28	119.00
IUUC-Pte-104303	Pyrenophora teres	49.30	5.00e-21	95.10
IUUC-Pyt-104580	Pyrenophora triticirepentis	49.65	8.00e-21	94.40
IUUC-Rno-104844	Rattus norvegicus	80.74	9.00e-98	350.00
IUUC-Sce-106214	Saccharomyces cerevisiae	37.31	1.00e-15	77.40
IUUC-Sha-107073	Sarcophilus harrisii	81.65	5.00e-81	294.00
IUUC-Sja-107851	Schizosaccharomyces japonicus	41.83	2.00e-39	156.00
IUUC-Spo-108298	Schizosaccharomyces pombe	39.50	3.00e-39	155.00
IUUC-Sly-111349	Solanum lycopersicum	38.52	1.00e-39	156.00
IUUC-Stu-112306	Solanum tuberosum	37.40	1.00e-37	150.00
IUUC-Sar-112925	Sorex araneus	73.13	2.00e-78	285.00
IUUC-Ssc-116329	Sus scrofa	82.02	3.00e-90	325.00
IUUC-Tgu-116918	Taeniopygia guttata	87.24	3.00e-139	487.00
IUUC-Tru-118651	Takifugu rubripes	63.07	2.00e-74	272.00
IUUC-Tsy-118836	Tarsius syrichta	87.68	7.00e-47	181.00
IUUC-Tre-121911	Trichoderma reesei	37.40	3.00e-27	115.00
IUUC-Tae-125620	Triticum aestivum	37.40	4.00e-38	151.00
IUUC-Tur-126101	Triticum urartu	39.37	3.00e-21	95.90
IUUC-Tbe-127493	Tupaia belangeri	67.90	9.00e-61	227.00
IUUC-Ttr-128464	Tursiops truncatus	82.02	5.00e-90	324.00
IUUC-Uma-129484	Ustilago maydis	54.17	3.00e-11	62.80
IUUC-Vpa-130357	Vicugna pacos	76.52	2.00e-57	215.00
IUUC-Vvi-131039	Vitis vinifera	38.31	2.00e-41	162.00
IUUC-Xtr-132679	Xenopus tropicalis	73.05	1.00e-66	246.00
IUUC-Xma-133503	Xiphophorus maculatus	61.25	3.00e-73	268.00
IUUC-Yli-134615	Yarrowia lipolytica	39.55	2.00e-37	149.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence