iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ocu-074534

Ensembl Protein ID

ENSOCUP00000005310.3

UniProt Accession

G1SQE2; G1SQE2_RABIT

Protein Name

Uncharacterized protein

Gene Name

TNRC6C

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSOCUG00000006122.3	ENSOCUT00000006127.3	ENSOCUP00000005310.3

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/UBA	3.30e-06	27.1	1075	1108

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 6    kleqlveMGFdreealqaLraannnleaAveyLl 39
           ++ ql++MGF+re a +aLr++n nl+ A+  Ll
   Q: 1075 LIKQLTDMGFPREPAEEALRSNNMNLDQAMSALL 1108
           799**************************99887 PP

Organism

Oryctolagus cuniculus

Protein Sequence
(Fasta)

MMTLRQRERE QEPQEEERLM EEKKKKKQEE KKKKESAQKK AADQKTKVPE PTKTCSSQPQ 60
PAGTSTSTST STVSSSNNGK RACASGQQPA ASRYLPREVP PRFRQQEQKQ LLKRGQPLPT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGATGACCC TGAGACAACG GTGAGGAATG CGGGTCTGGC CTGGCCGCCG TTGTACCCTT 60
TCCCCCGCGC GATGCCCAGC ACGTGCAGGC TGAACACAGC AGCCAGCGGA GGCAGCCAGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR019486--Argonaute_hook_dom
IPR026805--GW182_M_dom
IPR032226--TNRC6_PABC-bd
IPR033499--TNRC6C
IPR015940--UBA
IPR009060--UBA-like

PROSITE

PS50030--UBA

Pfam

PF10427--Ago_hook
PF12938--M_domain
PF16608--TNRC6-PABC_bdg
PF00627--UBA

SMART

SM00165--UBA

Gene Ontology

GO:0035278--P:miRNA mediated inhibition of translation
GO:0060213--P:positive regulation of nuclear-transcribed mRNA poly(A) tail shortening

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Apl-003191	Anas platyrhynchos	72.30	0.00e+00	871.00
IUUC-Aca-004717	Anolis carolinensis	68.60	0.00e+00	969.00
IUUC-Ame-010681	Astyanax mexicanus	56.97	5.00e-114	406.00
IUUC-Cja-019614	Callithrix jacchus	73.50	0.00e+00	1399.00
IUUC-Cpo-021452	Cavia porcellus	71.80	0.00e+00	856.00
IUUC-Dre-028059	Danio rerio	62.44	1.00e-149	525.00
IUUC-Ete-032774	Echinops telfairi	78.70	3.00e-179	623.00
IUUC-Eca-033866	Equus caballus	74.00	0.00e+00	821.00
IUUC-Fal-036856	Ficedula albicollis	73.33	0.00e+00	688.00
IUUC-Gga-040531	Gallus gallus	69.00	0.00e+00	887.00
IUUC-Gac-041681	Gasterosteus aculeatus	51.48	1.00e-112	402.00
IUUC-Ggo-045143	Gorilla gorilla	73.96	0.00e+00	1373.00
IUUC-Hsa-045913	Homo sapiens	76.40	0.00e+00	823.00
IUUC-Loc-052289	Lepisosteus oculatus	74.47	9.00e-171	595.00
IUUC-Laf-053607	Loxodonta africana	85.41	0.00e+00	730.00
IUUC-Mcc-055342	Macaca mulatta	75.90	0.00e+00	809.00
IUUC-Mdo-062155	Monodelphis domestica	84.15	0.00e+00	715.00
IUUC-Ptr-091135	Pan troglodytes	87.70	0.00e+00	744.00
IUUC-Pan-092665	Papio anubis	87.70	0.00e+00	744.00
IUUC-Psi-093057	Pelodiscus sinensis	68.91	0.00e+00	775.00
IUUC-Pfo-097115	Poecilia formosa	54.41	1.00e-126	447.00
IUUC-Pca-100481	Procavia capensis	69.35	0.00e+00	675.00
IUUC-Sly-111284	Solanum lycopersicum	33.33	3.70e-01	30.40
IUUC-Ssc-115574	Sus scrofa	71.72	2.00e-154	540.00
IUUC-Tgu-117233	Taeniopygia guttata	78.17	0.00e+00	709.00
IUUC-Tru-117725	Takifugu rubripes	55.49	1.00e-129	458.00
IUUC-Tae-123684	Triticum aestivum	47.06	1.30e-01	31.60
IUUC-Tbe-127989	Tupaia belangeri	89.16	1.00e-116	414.00
IUUC-Ttr-128518	Tursiops truncatus	74.50	0.00e+00	874.00
IUUC-Xtr-132265	Xenopus tropicalis	74.87	1.00e-172	601.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence