iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSRNOG00000024737.6	ENSRNOT00000086492.1	ENSRNOP00000071070.1
ENSRNOG00000024737.6	ENSRNOT00000017885.7	ENSRNOP00000017885.7

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
RAID2
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
UBD/Alpha-Helix/UBA	35.90	3.00e-34	145.00	IUUC-Dme-032014

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MRELEAKATK DVERNLSRDL VQEEEQLMEE KKRKKDDKKK KEAAQKKATE QKIKVPEQIK 60
PSVSQPQPAN SDNGTSTATS TNNNAKRATA SNQQPPPPQQ QPQQQQQQQQ QQQEQQQQQQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCGGCGGCAG CGGTGGCGGC GGCGGCGGCG GCAGCGGGAC GGTGTAGAAA ATGGCGCTGG 60
TGCAGCGGCT CGGGCCTGTC CCCGCGGCGC TGCGGAGGGC TTGAGGCTCG CGAGCCTCGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR019486--Argonaute_hook_dom
IPR026805--GW182_M_dom
IPR000536--Nucl_hrmn_rcpt_lig-bd
IPR012677--Nucleotide-bd_a/b_plait
IPR000504--RRM_dom
IPR032226--TNRC6_PABC-bd
IPR033501--TNRC6A

Pfam

PF10427--Ago_hook
PF12938--M_domain
PF16608--TNRC6-PABC_bdg

Gene Ontology

GO:0003676--F:nucleic acid binding
GO:0000166--F:nucleotide binding
GO:0035278--P:miRNA mediated inhibition of translation

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001985	Ailuropoda melanoleuca	91.88	0.00e+00	2836.00
IUUC-Apl-003191	Anas platyrhynchos	43.75	0.00e+00	687.00
IUUC-Aca-004717	Anolis carolinensis	42.47	0.00e+00	655.00
IUUC-Ame-010681	Astyanax mexicanus	42.53	8.00e-73	269.00
IUUC-Bta-012915	Bos taurus	92.81	0.00e+00	2757.00
IUUC-Cja-019614	Callithrix jacchus	40.11	7.00e-161	562.00
IUUC-Cfa-020452	Canis familiaris	94.07	0.00e+00	2860.00
IUUC-Cpo-021452	Cavia porcellus	41.32	3.00e-93	337.00
IUUC-Csa-023169	Chlorocebus sabaeus	92.21	0.00e+00	2816.00
IUUC-Cho-024655	Choloepus hoffmanni	85.85	0.00e+00	2088.00
IUUC-Dre-028059	Danio rerio	40.90	7.00e-125	442.00
IUUC-Dno-029734	Dasypus novemcinctus	89.35	0.00e+00	2786.00
IUUC-Dor-030671	Dipodomys ordii	91.04	0.00e+00	1910.00
IUUC-Dme-032014	Drosophila melanogaster	35.90	3.00e-30	128.00
IUUC-Ete-032774	Echinops telfairi	47.77	5.00e-87	317.00
IUUC-Eca-033866	Equus caballus	41.05	1.00e-168	588.00
IUUC-Eeu-034572	Erinaceus europaeus	48.80	3.00e-43	171.00
IUUC-Fal-036856	Ficedula albicollis	42.67	4.00e-143	503.00
IUUC-Gga-040531	Gallus gallus	40.43	4.00e-90	327.00
IUUC-Gac-041681	Gasterosteus aculeatus	44.58	1.00e-77	285.00
IUUC-Ggo-045143	Gorilla gorilla	40.74	5.00e-172	599.00
IUUC-Hsa-045913	Homo sapiens	40.19	2.00e-170	593.00
IUUC-Lch-049619	Latimeria chalumnae	65.79	0.00e+00	1989.00
IUUC-Loc-052289	Lepisosteus oculatus	50.63	2.00e-89	325.00
IUUC-Laf-053607	Loxodonta africana	45.14	4.00e-93	337.00
IUUC-Mcc-055342	Macaca mulatta	40.01	2.00e-160	560.00
IUUC-Meu-056275	Macropus eugenii	83.39	0.00e+00	1252.00
IUUC-Mga-059241	Meleagris gallopavo	77.68	0.00e+00	2377.00
IUUC-Mmr-061348	Microcebus murinus	94.57	0.00e+00	2914.00
IUUC-Mdo-062155	Monodelphis domestica	40.32	1.00e-94	342.00
IUUC-Mmu-064259	Mus musculus	94.71	0.00e+00	2208.00
IUUC-Mpu-066534	Mustela putorius furo	82.34	0.00e+00	2342.00
IUUC-Mlu-067834	Myotis lucifugus	88.67	0.00e+00	2783.00
IUUC-Nle-069168	Nomascus leucogenys	91.56	0.00e+00	2803.00
IUUC-Opr-070976	Ochotona princeps	38.57	1.00e-103	372.00
IUUC-Ocu-073749	Oryctolagus cuniculus	89.55	0.00e+00	2717.00
IUUC-Oga-088116	Otolemur garnettii	92.00	0.00e+00	2829.00
IUUC-Oar-090041	Ovis aries	93.25	0.00e+00	2643.00
IUUC-Ptr-091135	Pan troglodytes	41.09	7.00e-167	582.00
IUUC-Pan-092665	Papio anubis	40.86	2.00e-161	563.00
IUUC-Psi-093057	Pelodiscus sinensis	41.50	0.00e+00	633.00
IUUC-Pma-094508	Petromyzon marinus	41.05	6.00e-44	172.00
IUUC-Pfo-097115	Poecilia formosa	39.92	6.00e-65	242.00
IUUC-Pab-097935	Pongo abelii	91.83	0.00e+00	2806.00
IUUC-Pca-100481	Procavia capensis	47.56	1.00e-81	299.00
IUUC-Pva-102376	Pteropus vampyrus	42.52	2.00e-104	374.00
IUUC-Sar-113036	Sorex araneus	46.33	2.00e-42	168.00
IUUC-Ssc-115574	Sus scrofa	47.46	2.00e-66	248.00
IUUC-Tgu-117233	Taeniopygia guttata	41.61	6.00e-174	605.00
IUUC-Tru-117725	Takifugu rubripes	39.30	2.00e-115	410.00
IUUC-Tsy-118786	Tarsius syrichta	39.65	4.00e-94	340.00
IUUC-Tbe-127551	Tupaia belangeri	89.76	0.00e+00	2667.00
IUUC-Ttr-128518	Tursiops truncatus	46.31	1.00e-95	345.00
IUUC-Vpa-130230	Vicugna pacos	83.83	0.00e+00	1157.00
IUUC-Xtr-132265	Xenopus tropicalis	47.28	6.00e-86	313.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence