iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Ssc-115274

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

MJD1

Genbank Nucleotide ID

CU468363

Gene Name

ATXN3

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSSSCG00000002446.2	ENSSSCT00000002716.2	ENSSSCP00000002647.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/UIM	4.20e-10	38.7	224	242
UBD/Alpha-Helix/UIM	8.1e-06	16.1	244	259
UBD/Alpha-Helix/UIM	6.2e-05	13.5	327	344

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UIM

   S: 1    dEdeeLqlAlalSlqEeee 19
           +++e+Lq+AlalS+qE ++
   Q: 224  EDEEDLQRALALSRQEIDM 242
           69**************886 PP

UBD/Alpha-Helix/UIM

   S: 1    dEdeeLqlAlalSlqE 16
           dE+++L++A++lS+q 
   Q: 244  DEEADLRRAIQLSMQG 259
           7*************97 PP

UBD/Alpha-Helix/UIM

   S: 1    dEdeeLqlAlalSlqEee 18
           +E+++Lq A+++Sl+ ++
   Q: 327  SEEDMLQAAVTMSLETVR 344
           7*************9865 PP

Organism

Sus scrofa

Protein Sequence
(Fasta)

MESIFHEKQE GSLCAQHCLN NLLQGEYFSP VELSSIAHQL DEEERMRMAE GGVTSEDYRT 60
FLQQPSGNMD DSGFFSIQVI SNALKVWGLE LILFNSPEYQ RLRIDPINER SFICNYKEHW 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGGCGGAGGG GTGGGGTCGG GGGGCGGAGC TGGAGGGGGC TGGTTCGGCG AAGGGGCCGT 60
TGGCTCCAGA CAAATAAACA TGGAGTCCAT CTTCCACGAA AAAGTGAGTG TCCGCATTCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0378--Hydrolase
KW-1185--Reference proteome

Interpro

IPR033865--Ataxin-3
IPR006155--Josephin
IPR009068--S15_NS1_RNA-bd
IPR003903--UIM_dom

PROSITE

PS50957--JOSEPHIN
PS50330--UIM

Pfam

PF02099--Josephin
PF02809--UIM

SMART

SM01246--Josephin
SM00726--UIM

Gene Ontology

GO:0005759--C:mitochondrial matrix
GO:0031966--C:mitochondrial membrane
GO:0042405--C:nuclear inclusion body
GO:0004843--F:thiol-dependent ubiquitin-specific protease activity
GO:0034605--P:cellular response to heat
GO:0071218--P:cellular response to misfolded protein
GO:0035640--P:exploration behavior
GO:0006515--P:misfolded or incompletely synthesized protein catabolic process
GO:0035520--P:monoubiquitinated protein deubiquitination
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0010810--P:regulation of cell-substrate adhesion

KEGG

ssc:100144422

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002015	Ailuropoda melanoleuca	94.80	0.00e+00	653.00
IUUC-Atr-002735	Amborella trichopoda	50.00	2.00e-06	43.10
IUUC-Apl-003210	Anas platyrhynchos	77.31	1.00e-147	515.00
IUUC-Aca-005171	Anolis carolinensis	74.25	4.00e-128	450.00
IUUC-Aly-005625	Arabidopsis lyrata	44.64	7.00e-41	160.00
IUUC-Ath-007088	Arabidopsis thaliana	44.64	7.00e-41	160.00
IUUC-Afu-009069	Aspergillus fumigatus	27.73	2.40e-02	31.60
IUUC-Ame-010715	Astyanax mexicanus	70.70	4.00e-122	430.00
IUUC-Bta-013538	Bos taurus	87.06	0.00e+00	639.00
IUUC-Bci-013745	Botrytis cinerea	34.85	1.80e-01	31.20
IUUC-Bdi-015000	Brachypodium distachyon	42.01	4.00e-36	144.00
IUUC-Bol-015894	Brassica oleracea	44.05	5.00e-41	162.00
IUUC-Bra-018020	Brassica rapa	44.31	2.00e-41	163.00
IUUC-Cel-018121	Caenorhabditis elegans	37.12	6.00e-44	170.00
IUUC-Cja-018840	Callithrix jacchus	84.62	1.00e-177	615.00
IUUC-Cfa-021035	Canis familiaris	94.69	0.00e+00	677.00
IUUC-Cpo-021776	Cavia porcellus	85.71	2.00e-179	621.00
IUUC-Csa-023257	Chlorocebus sabaeus	69.83	9.00e-139	486.00
IUUC-Cho-024878	Choloepus hoffmanni	90.83	0.00e+00	632.00
IUUC-Cgl-026754	Colletotrichum gloeosporioides	48.72	3.90e-01	30.40
IUUC-Cme-027158	Cyanidioschyzon merolae	31.22	9.00e-13	66.60
IUUC-Dre-027506	Danio rerio	68.95	5.00e-90	323.00
IUUC-Dno-029172	Dasypus novemcinctus	90.06	0.00e+00	648.00
IUUC-Dor-030900	Dipodomys ordii	80.60	2.00e-150	524.00
IUUC-Ete-033000	Echinops telfairi	59.82	1.00e-92	332.00
IUUC-Eca-034338	Equus caballus	93.16	0.00e+00	650.00
IUUC-Eeu-034585	Erinaceus europaeus	98.10	2.00e-57	215.00
IUUC-Fca-035441	Felis catus	91.49	1.00e-72	264.00
IUUC-Fal-037525	Ficedula albicollis	75.48	4.00e-137	480.00
IUUC-Gmo-039718	Gadus morhua	70.49	6.00e-113	399.00
IUUC-Gga-040774	Gallus gallus	77.53	1.00e-153	535.00
IUUC-Gac-041671	Gasterosteus aculeatus	72.85	1.00e-109	389.00
IUUC-Gma-042801	Glycine max	41.32	2.00e-37	149.00
IUUC-Ggo-044759	Gorilla gorilla	89.69	1.00e-152	531.00
IUUC-Hsa-046591	Homo sapiens	89.66	8.00e-176	608.00
IUUC-Hvu-047492	Hordeum vulgare	43.20	1.00e-34	140.00
IUUC-Itr-048851	Ictidomys tridecemlineatus	73.80	1.00e-130	458.00
IUUC-Lch-049519	Latimeria chalumnae	71.72	4.00e-112	397.00
IUUC-Lpe-050819	Leersia perrieri	43.27	5.00e-36	144.00
IUUC-Loc-051816	Lepisosteus oculatus	68.27	2.00e-131	461.00
IUUC-Laf-053784	Loxodonta africana	90.68	0.00e+00	650.00
IUUC-Mcc-055283	Macaca mulatta	93.33	0.00e+00	667.00
IUUC-Meu-056589	Macropus eugenii	76.60	5.00e-151	526.00
IUUC-Mtr-058233	Medicago truncatula	33.95	5.00e-38	150.00
IUUC-Mla-059013	Melampsora laricipopulina	39.90	2.00e-31	129.00
IUUC-Mga-059301	Meleagris gallopavo	76.16	1.00e-155	542.00
IUUC-Mmr-061038	Microcebus murinus	91.78	0.00e+00	668.00
IUUC-Mdo-062927	Monodelphis domestica	85.19	1.00e-153	535.00
IUUC-Mmu-063600	Mus musculus	86.20	2.00e-167	581.00
IUUC-Mpu-065897	Mustela putorius furo	97.17	5.00e-162	563.00
IUUC-Mlu-067543	Myotis lucifugus	94.43	4.00e-161	560.00
IUUC-Nle-069847	Nomascus leucogenys	87.19	4.00e-177	613.00
IUUC-Opr-070550	Ochotona princeps	82.23	2.00e-159	554.00
IUUC-Ont-071723	Oreochromis niloticus	66.76	7.00e-113	399.00
IUUC-Oan-073569	Ornithorhynchus anatinus	79.30	1.00e-164	572.00
IUUC-Ocu-074632	Oryctolagus cuniculus	90.80	0.00e+00	631.00
IUUC-Oba-075288	Oryza barthii	43.27	3.00e-38	152.00
IUUC-Obr-076050	Oryza brachyantha	42.69	3.00e-34	139.00
IUUC-Ogl-077174	Oryza glaberrima	43.27	3.00e-38	152.00
IUUC-Ogu-078006	Oryza glumaepatula	43.27	3.00e-38	151.00
IUUC-Oin-079278	Oryza indica	40.88	8.00e-36	144.00
IUUC-Olo-080941	Oryza longistaminata	43.27	3.00e-38	152.00
IUUC-Ome-081172	Oryza meridionalis	43.27	3.00e-38	151.00
IUUC-Oni-082239	Oryza nivara	43.27	3.00e-38	152.00
IUUC-Opu-083939	Oryza punctata	42.69	1.00e-37	149.00
IUUC-Oru-084393	Oryza rufipogon	43.27	3.00e-38	152.00
IUUC-Osa-086080	Oryza sativa	43.27	2.00e-38	152.00
IUUC-Ola-087566	Oryzias latipes	74.32	3.00e-113	400.00
IUUC-Oga-088617	Otolemur garnettii	72.94	6.00e-134	469.00
IUUC-Oar-090052	Ovis aries	86.92	0.00e+00	635.00
IUUC-Ptr-091435	Pan troglodytes	93.07	0.00e+00	667.00
IUUC-Pan-092742	Papio anubis	69.83	3.00e-138	484.00
IUUC-Psi-093313	Pelodiscus sinensis	89.47	3.00e-132	464.00
IUUC-Pma-094374	Petromyzon marinus	60.75	9.00e-86	309.00
IUUC-Pno-095003	Phaeosphaeria nodorum	35.71	1.20e-02	35.40
IUUC-Ppa-095601	Physcomitrella patens	44.64	5.00e-45	174.00
IUUC-Pfo-097327	Poecilia formosa	70.71	2.00e-113	401.00
IUUC-Pab-098611	Pongo abelii	91.26	2.00e-159	554.00
IUUC-Pca-101022	Procavia capensis	99.11	1.00e-65	243.00
IUUC-Ppe-101545	Prunus persica	43.45	6.00e-39	154.00
IUUC-Pva-102844	Pteropus vampyrus	93.07	0.00e+00	670.00
IUUC-Rno-104896	Rattus norvegicus	86.20	4.00e-174	603.00
IUUC-Sha-107106	Sarcophilus harrisii	85.32	3.00e-175	607.00
IUUC-Sit-110477	Setaria italica	43.86	1.00e-37	149.00
IUUC-Sly-111416	Solanum lycopersicum	39.13	4.00e-18	84.30
IUUC-Stu-112227	Solanum tuberosum	34.13	1.00e-20	92.40
IUUC-Sar-113534	Sorex araneus	81.25	3.00e-157	547.00
IUUC-Sbi-114751	Sorghum bicolor	42.77	4.00e-36	144.00
IUUC-Tgu-117426	Taeniopygia guttata	79.08	1.00e-147	515.00
IUUC-Tru-118059	Takifugu rubripes	73.85	2.00e-109	388.00
IUUC-Tsy-119448	Tarsius syrichta	84.16	6.00e-89	320.00
IUUC-Tni-120681	Tetraodon nigroviridis	89.15	5.00e-62	228.00
IUUC-Tca-121442	Theobroma cacao	36.25	2.00e-41	162.00
IUUC-Tae-123969	Triticum aestivum	42.11	7.00e-33	134.00
IUUC-Tbe-127638	Tupaia belangeri	87.43	3.00e-171	593.00
IUUC-Ttr-129288	Tursiops truncatus	85.79	1.00e-170	592.00
IUUC-Uma-129359	Ustilago maydis	38.22	1.00e-34	140.00
IUUC-Vpa-130788	Vicugna pacos	93.56	0.00e+00	664.00
IUUC-Vvi-131227	Vitis vinifera	42.51	2.00e-36	145.00
IUUC-Xtr-132147	Xenopus tropicalis	71.19	1.00e-132	465.00
IUUC-Xma-133144	Xiphophorus maculatus	70.37	4.00e-110	390.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence