iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Rno-105321

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

F-box protein 40

Genbank Nucleotide ID

AABR07034346

Gene Name

Fbxo40

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSRNOG00000002459.7	ENSRNOT00000003340.7	ENSRNOP00000003340.6

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
Protein-protein Interaction
IID
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 adaptor/Cullin RING/SCF/F-box	85.19	0.00e+00	1199.00	IUUC-Hsa-046965

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MGRARRPPPA LHRHCEGCID RHCRVPAEPS VSCLVISCHL LCGATFHMCK ESEHTLLCPL 60
EQVPCLNSEY GCPLSMARHK LAKHLQVCPA SVVCCSMEWN RWPNVDSETV LHENIMKESP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCCAGCTGCT TCTCCTCCAG CTCCTGGACA CAGCTGGACC TGCCCACGGC ACACACAGGG 60
CTGGGGCTGT TCTGGCCTTA CCCTGACCCT TCCTGCAAAG GCTTTCCTCC TTCCTCTGTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001810--F-box_dom
IPR031890--Fbxo30/Fbxo40
IPR008974--TRAF-like
IPR013083--Znf_RING/FYVE/PHD
IPR001293--Znf_TRAF

PROSITE

PS50181--FBOX
PS50145--ZF_TRAF

Pfam

PF15966--F-box_4
PF15965--zf-TRAF_2

Gene Ontology

GO:0005737--C:cytoplasm
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0042692--P:muscle cell differentiation

KEGG

rno:363790

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001882	Ailuropoda melanoleuca	83.78	0.00e+00	1145.00
IUUC-Apl-003788	Anas platyrhynchos	65.45	0.00e+00	899.00
IUUC-Aca-004624	Anolis carolinensis	60.97	0.00e+00	872.00
IUUC-Ame-011599	Astyanax mexicanus	50.00	0.00e+00	709.00
IUUC-Bta-013376	Bos taurus	83.43	0.00e+00	1159.00
IUUC-Cja-019840	Callithrix jacchus	83.78	0.00e+00	1140.00
IUUC-Cfa-020146	Canis familiaris	83.59	0.00e+00	1153.00
IUUC-Cpo-021483	Cavia porcellus	82.23	0.00e+00	1182.00
IUUC-Csa-023141	Chlorocebus sabaeus	84.91	0.00e+00	1153.00
IUUC-Cho-024945	Choloepus hoffmanni	80.85	0.00e+00	1184.00
IUUC-Dre-027812	Danio rerio	45.57	2.00e-171	595.00
IUUC-Dno-030088	Dasypus novemcinctus	83.24	0.00e+00	1173.00
IUUC-Dor-030549	Dipodomys ordii	86.20	0.00e+00	1252.00
IUUC-Eca-034434	Equus caballus	84.53	0.00e+00	1186.00
IUUC-Eeu-035064	Erinaceus europaeus	81.21	0.00e+00	1167.00
IUUC-Fca-035523	Felis catus	80.26	0.00e+00	1124.00
IUUC-Fal-037137	Ficedula albicollis	63.69	0.00e+00	864.00
IUUC-Gmo-039031	Gadus morhua	47.19	0.00e+00	636.00
IUUC-Gga-040532	Gallus gallus	66.67	0.00e+00	770.00
IUUC-Gac-041371	Gasterosteus aculeatus	47.11	0.00e+00	639.00
IUUC-Gma-042970	Glycine max	23.46	2.70e-02	34.30
IUUC-Ggo-044453	Gorilla gorilla	85.05	0.00e+00	1183.00
IUUC-Hsa-046965	Homo sapiens	85.19	0.00e+00	1184.00
IUUC-Itr-048530	Ictidomys tridecemlineatus	83.74	0.00e+00	1194.00
IUUC-Lch-049573	Latimeria chalumnae	54.74	0.00e+00	802.00
IUUC-Loc-052475	Lepisosteus oculatus	54.17	0.00e+00	759.00
IUUC-Laf-054424	Loxodonta africana	83.10	0.00e+00	1199.00
IUUC-Mcc-055243	Macaca mulatta	85.47	0.00e+00	1163.00
IUUC-Meu-055909	Macropus eugenii	75.14	0.00e+00	1095.00
IUUC-Mga-060045	Meleagris gallopavo	65.25	0.00e+00	926.00
IUUC-Mmr-061531	Microcebus murinus	81.13	0.00e+00	1101.00
IUUC-Mdo-062838	Monodelphis domestica	76.45	0.00e+00	1086.00
IUUC-Mmu-064229	Mus musculus	93.94	0.00e+00	1363.00
IUUC-Mpu-066012	Mustela putorius furo	84.16	0.00e+00	1128.00
IUUC-Mlu-067170	Myotis lucifugus	82.68	0.00e+00	1162.00
IUUC-Nle-069819	Nomascus leucogenys	85.05	0.00e+00	1187.00
IUUC-Ont-072664	Oreochromis niloticus	48.04	0.00e+00	663.00
IUUC-Oan-072948	Ornithorhynchus anatinus	58.40	0.00e+00	773.00
IUUC-Ocu-074610	Oryctolagus cuniculus	84.60	0.00e+00	1250.00
IUUC-Ola-087480	Oryzias latipes	47.35	4.00e-180	624.00
IUUC-Oga-088445	Otolemur garnettii	83.66	0.00e+00	1194.00
IUUC-Oar-089876	Ovis aries	83.47	0.00e+00	1154.00
IUUC-Ptr-090727	Pan troglodytes	85.05	0.00e+00	1181.00
IUUC-Pan-092488	Papio anubis	85.47	0.00e+00	1164.00
IUUC-Psi-093321	Pelodiscus sinensis	63.66	0.00e+00	808.00
IUUC-Pno-095023	Phaeosphaeria nodorum	30.43	5.00e-03	36.20
IUUC-Pfo-097321	Poecilia formosa	49.21	0.00e+00	659.00
IUUC-Pab-097637	Pongo abelii	84.63	0.00e+00	1176.00
IUUC-Pca-100632	Procavia capensis	81.54	0.00e+00	854.00
IUUC-Pva-102503	Pteropus vampyrus	81.52	0.00e+00	1156.00
IUUC-Ptt-103857	Puccinia triticina	38.89	6.20e-02	32.30
IUUC-Sha-106906	Sarcophilus harrisii	75.25	0.00e+00	1057.00
IUUC-Sar-113603	Sorex araneus	81.97	0.00e+00	1181.00
IUUC-Ssc-116153	Sus scrofa	84.39	0.00e+00	800.00
IUUC-Tgu-117476	Taeniopygia guttata	63.74	0.00e+00	864.00
IUUC-Tru-118371	Takifugu rubripes	44.79	4.00e-169	588.00
IUUC-Tsy-118977	Tarsius syrichta	66.38	2.00e-127	449.00
IUUC-Tni-119795	Tetraodon nigroviridis	47.28	3.00e-176	612.00
IUUC-Tbe-127246	Tupaia belangeri	83.54	0.00e+00	1204.00
IUUC-Ttr-128674	Tursiops truncatus	81.26	0.00e+00	1075.00
IUUC-Vpa-130395	Vicugna pacos	79.44	0.00e+00	1100.00
IUUC-Xtr-132899	Xenopus tropicalis	56.94	0.00e+00	805.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence