iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ocu-074177

Ensembl Protein ID

ENSOCUP00000020108.1

UniProt Accession

G1TST9; G1TST9_RABIT

Genbank Protein ID

ENSOCUP00000020108

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

AAGW02051573

Gene Name

CHD4

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSOCUG00000008215.3	ENSOCUT00000027323.1	ENSOCUP00000020108.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	2.60e-16	59.6	440	484

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 2    kvClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCr 52
           ++C vC++gge    l++C+ C + +H +Cl+++  +e pn e w Cp+C+
   Q: 440  EFCRVCKDGGE----LLCCDTCPSSYHIHCLNPP-LPEIPNGE-WLCPRCT 484
           58*********....*******************.*******8.******6 PP

Organism

Oryctolagus cuniculus

Protein Sequence
(Fasta)

QRKGMASGLG SPSPCSAGSE EEDMDALLNN SLPPPHPENE EDPEEDLSEA ETPKLKKKKK 60
PKKPRDPKIP KSKRQKKERL LLCRQLGDSS GEGPEFVEEE EEVALRSDSE GSDYTPAVNF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CAGCGGAAGG GGATGGCGTC GGGCCTGGGC TCACCGTCCC CCTGCTCAGC GGGCAGTGAG 60
GAGGAGGATA TGGATGCACT TTTGAACAAC AGCCTGCCCC CACCCCACCC AGGTAACACC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR028725--CHD4
IPR012957--CHD_C2
IPR012958--CHD_N
IPR000953--Chromo/chromo_shadow_dom
IPR023780--Chromo_domain
IPR016197--Chromodomain-like
IPR002464--DNA/RNA_helicase_DEAH_CS
IPR009462--DUF1086
IPR009463--DUF1087
IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR027417--P-loop_NTPase
IPR000330--SNF2_N
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50013--CHROMO_2
PS00690--DEAH_ATP_HELICASE
PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF08074--CHDCT2
PF08073--CHDNT
PF00385--Chromo
PF06461--DUF1086
PF06465--DUF1087
PF00271--Helicase_C
PF00628--PHD
PF00176--SNF2_N

SMART

SM00298--CHROMO
SM00487--DEXDc
SM01146--DUF1086
SM01147--DUF1087
SM00490--HELICc
SM00249--PHD

Gene Ontology

GO:0005813--C:centrosome
GO:0005737--C:cytoplasm
GO:0016020--C:membrane
GO:0000790--C:nuclear chromatin
GO:0016581--C:NuRD complex
GO:0032993--C:protein-DNA complex
GO:0005524--F:ATP binding
GO:0008026--F:ATP-dependent helicase activity
GO:0031492--F:nucleosomal DNA binding
GO:0000978--F:RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980--F:RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0008270--F:zinc ion binding
GO:0043044--P:ATP-dependent chromatin remodeling
GO:0006355--P:regulation of transcription, DNA-templated
GO:0051225--P:spindle assembly

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001361	Ailuropoda melanoleuca	94.38	0.00e+00	2982.00
IUUC-Apl-004175	Anas platyrhynchos	91.78	0.00e+00	2731.00
IUUC-Aca-004774	Anolis carolinensis	85.94	0.00e+00	2782.00
IUUC-Ame-011098	Astyanax mexicanus	80.43	0.00e+00	2349.00
IUUC-Bta-013220	Bos taurus	95.12	0.00e+00	2943.00
IUUC-Cja-019510	Callithrix jacchus	88.51	0.00e+00	2647.00
IUUC-Cfa-020422	Canis familiaris	95.53	0.00e+00	2975.00
IUUC-Cpo-021704	Cavia porcellus	94.68	0.00e+00	2899.00
IUUC-Csa-023625	Chlorocebus sabaeus	95.37	0.00e+00	2957.00
IUUC-Cho-024361	Choloepus hoffmanni	90.95	0.00e+00	1452.00
IUUC-Dre-027692	Danio rerio	85.51	0.00e+00	1975.00
IUUC-Dno-029656	Dasypus novemcinctus	94.95	0.00e+00	2932.00
IUUC-Dor-030354	Dipodomys ordii	90.84	0.00e+00	1893.00
IUUC-Dme-032150	Drosophila melanogaster	62.77	0.00e+00	1410.00
IUUC-Eca-034112	Equus caballus	95.53	0.00e+00	2972.00
IUUC-Fca-036056	Felis catus	95.63	0.00e+00	2966.00
IUUC-Fal-037312	Ficedula albicollis	95.36	0.00e+00	2315.00
IUUC-Gga-040216	Gallus gallus	91.87	0.00e+00	2831.00
IUUC-Gac-042478	Gasterosteus aculeatus	76.96	0.00e+00	2016.00
IUUC-Ggo-044428	Gorilla gorilla	87.91	0.00e+00	2612.00
IUUC-Hsa-045908	Homo sapiens	93.57	0.00e+00	2948.00
IUUC-Itr-048002	Ictidomys tridecemlineatus	95.31	0.00e+00	2962.00
IUUC-Lch-049948	Latimeria chalumnae	76.50	0.00e+00	1916.00
IUUC-Loc-052144	Lepisosteus oculatus	85.73	0.00e+00	2113.00
IUUC-Laf-053749	Loxodonta africana	74.38	0.00e+00	1958.00
IUUC-Mcc-055773	Macaca mulatta	93.67	0.00e+00	2956.00
IUUC-Mga-059633	Meleagris gallopavo	91.94	0.00e+00	2836.00
IUUC-Mmr-060886	Microcebus murinus	93.83	0.00e+00	2958.00
IUUC-Mdo-062872	Monodelphis domestica	95.62	0.00e+00	2625.00
IUUC-Mmu-063672	Mus musculus	94.45	0.00e+00	2882.00
IUUC-Mpu-066692	Mustela putorius furo	95.58	0.00e+00	2966.00
IUUC-Mlu-067785	Myotis lucifugus	95.38	0.00e+00	2962.00
IUUC-Nle-070039	Nomascus leucogenys	93.60	0.00e+00	2887.00
IUUC-Ont-072418	Oreochromis niloticus	82.15	0.00e+00	2115.00
IUUC-Ola-086880	Oryzias latipes	78.91	0.00e+00	2160.00
IUUC-Oga-088970	Otolemur garnettii	93.93	0.00e+00	2972.00
IUUC-Oar-090422	Ovis aries	95.09	0.00e+00	2890.00
IUUC-Pan-092441	Papio anubis	95.47	0.00e+00	2962.00
IUUC-Psi-093530	Pelodiscus sinensis	89.58	0.00e+00	2777.00
IUUC-Ppa-095213	Physcomitrella patens	42.11	0.00e+00	725.00
IUUC-Pfo-097530	Poecilia formosa	77.47	0.00e+00	2103.00
IUUC-Pab-097959	Pongo abelii	92.99	0.00e+00	2864.00
IUUC-Pca-100559	Procavia capensis	70.35	0.00e+00	1779.00
IUUC-Pva-103186	Pteropus vampyrus	93.76	0.00e+00	2887.00
IUUC-Rno-105692	Rattus norvegicus	93.52	0.00e+00	2890.00
IUUC-Ssc-115295	Sus scrofa	95.47	0.00e+00	2934.00
IUUC-Tgu-117484	Taeniopygia guttata	88.09	0.00e+00	2810.00
IUUC-Tru-118745	Takifugu rubripes	76.55	0.00e+00	2512.00
IUUC-Tsy-119261	Tarsius syrichta	86.89	0.00e+00	2035.00
IUUC-Tni-120764	Tetraodon nigroviridis	79.70	0.00e+00	2093.00
IUUC-Ttr-128478	Tursiops truncatus	89.29	0.00e+00	2733.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence