iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-098892

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000337

Gene Name

POPTRDRAFT_639831; POPTR_0001s06410g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0001s06410	POPTR_0001s06410.1	POPTR_0001s06410.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.10e-34	116.2	220	256
UBD/Beta-Prp	1.30e-60	206.2	257	418

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sdtllvsGsdDgtikvWDlrtgvll 36
           H++sv++l+f  +d  ++s+sdD t+kvWD+ +++ +
   Q: 220  HKESVRGLSFcrTDLKFCSCSDDTTVKVWDFARCHEE 256
           9**********877889*************8777665 PP

UBD/Beta-Prp

   S: 46   rslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsgh 136
           rsl gh   v++v+++p++++lv+g++D+++k+wd ++gk + +++gh+++vl+++++++g++++++s+d++i+++d++  ++le  ++gh
   Q: 257  RSLTGHGWDVKSVDWHPTKSLLVSGGKDNLVKLWDAKSGKELCSFHGHKNTVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE-SFRGH 346
           78999999****************************************************************************9.***** PP
   S: 137  dgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklw 207
           ++ v+ +++hp+   ++vsGs+D+ +  W +  ++   + +++h++sv  l++++ g  l sgs+d t k+w
   Q: 347  RKDVTALAWHPFHeEYFVSGSYDGSIFHWLVGHETPQIEVSSAHDNSVWDLAWHPIGYLLCSGSNDHTTKFW 418
           ****************************************99****************************** PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MQHQPPPGND FHRGPPPPPM MRQPSASSTT LSPLDYHHQH HPPQAAPGPP HPNYEGHGDG 60
YGGKRMRKLT QRRAVDYTST VVRYIQTRMW QRDSRDRTIL QHTPAAAIDV LPTVAYSDNP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CACCACCACC ACCAACATAT GCAACATCAA CCGCCACCTG GTAATGACTT CCACCGAGGC 60
CCCCCGCCAC CGCCGATGAT GCGGCAACCC TCCGCTTCAT CAACAACTCT TAGTCCTCTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005847--C:mRNA cleavage and polyadenylation specificity factor complex
GO:0006379--P:mRNA cleavage

KEGG

pop:POPTR_0001s06410g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001363	Ailuropoda melanoleuca	56.25	9.00e-135	474.00
IUUC-Atr-003030	Amborella trichopoda	82.20	0.00e+00	750.00
IUUC-Apl-003409	Anas platyrhynchos	56.61	4.00e-133	469.00
IUUC-Aca-004694	Anolis carolinensis	56.65	3.00e-134	472.00
IUUC-Ame-010741	Astyanax mexicanus	54.58	5.00e-81	295.00
IUUC-Bta-013265	Bos taurus	56.25	6.00e-135	475.00
IUUC-Cel-018378	Caenorhabditis elegans	46.92	1.00e-116	414.00
IUUC-Cja-019547	Callithrix jacchus	56.25	3.00e-135	476.00
IUUC-Cfa-020031	Canis familiaris	56.25	4.00e-135	475.00
IUUC-Cpo-021554	Cavia porcellus	56.18	2.00e-130	459.00
IUUC-Csa-023146	Chlorocebus sabaeus	55.99	8.00e-135	474.00
IUUC-Cho-024679	Choloepus hoffmanni	52.34	3.00e-123	436.00
IUUC-Cin-025415	Ciona intestinalis	53.78	4.00e-124	438.00
IUUC-Csv-026003	Ciona savignyi	52.82	2.00e-121	428.00
IUUC-Dre-028545	Danio rerio	55.78	1.00e-134	473.00
IUUC-Dno-029677	Dasypus novemcinctus	56.25	2.00e-135	476.00
IUUC-Dse-031371	Dothistroma septosporum	43.54	5.00e-95	341.00
IUUC-Dme-031663	Drosophila melanogaster	56.88	1.00e-134	473.00
IUUC-Ete-032511	Echinops telfairi	49.74	1.00e-113	404.00
IUUC-Eca-034152	Equus caballus	56.25	7.00e-135	474.00
IUUC-Fca-035820	Felis catus	56.25	6.00e-135	475.00
IUUC-Gmo-039708	Gadus morhua	55.44	1.00e-132	466.00
IUUC-Gga-040963	Gallus gallus	56.25	8.00e-135	474.00
IUUC-Gac-041541	Gasterosteus aculeatus	55.81	1.00e-130	460.00
IUUC-Ggo-045564	Gorilla gorilla	56.25	4.00e-135	475.00
IUUC-Hsa-045833	Homo sapiens	56.25	4.00e-135	475.00
IUUC-Itr-048083	Ictidomys tridecemlineatus	56.25	5.00e-135	475.00
IUUC-Lch-050525	Latimeria chalumnae	55.05	1.00e-134	474.00
IUUC-Loc-052696	Lepisosteus oculatus	56.65	4.00e-136	478.00
IUUC-Laf-053653	Loxodonta africana	56.25	6.00e-135	475.00
IUUC-Mcc-055797	Macaca mulatta	56.25	3.00e-135	476.00
IUUC-Mtr-058032	Medicago truncatula	87.05	0.00e+00	778.00
IUUC-Mga-059311	Meleagris gallopavo	56.25	1.00e-134	474.00
IUUC-Mmr-061143	Microcebus murinus	56.25	5.00e-135	475.00
IUUC-Mdo-061977	Monodelphis domestica	56.25	9.00e-135	474.00
IUUC-Mmu-063922	Mus musculus	56.25	3.00e-135	476.00
IUUC-Mpu-066079	Mustela putorius furo	59.63	1.00e-119	424.00
IUUC-Mlu-067247	Myotis lucifugus	56.25	6.00e-135	475.00
IUUC-Nle-068994	Nomascus leucogenys	56.25	3.00e-135	476.00
IUUC-Opr-071079	Ochotona princeps	56.25	2.00e-135	476.00
IUUC-Ont-071971	Oreochromis niloticus	55.73	3.00e-133	469.00
IUUC-Oan-073135	Ornithorhynchus anatinus	58.63	8.00e-121	428.00
IUUC-Ocu-073982	Oryctolagus cuniculus	56.25	1.00e-134	474.00
IUUC-Ola-087421	Oryzias latipes	56.25	1.00e-134	472.00
IUUC-Oga-088132	Otolemur garnettii	56.25	4.00e-135	475.00
IUUC-Oar-089513	Ovis aries	56.25	6.00e-135	475.00
IUUC-Ptr-090717	Pan troglodytes	56.25	4.00e-135	476.00
IUUC-Pan-092108	Papio anubis	56.25	3.00e-135	476.00
IUUC-Psi-093892	Pelodiscus sinensis	56.25	2.00e-134	473.00
IUUC-Pma-094561	Petromyzon marinus	56.40	5.00e-137	482.00
IUUC-Pno-094943	Phaeosphaeria nodorum	41.07	3.00e-99	355.00
IUUC-Ppa-095359	Physcomitrella patens	73.58	0.00e+00	659.00
IUUC-Pfo-096516	Poecilia formosa	55.58	5.00e-132	465.00
IUUC-Pab-097759	Pongo abelii	56.25	3.00e-135	476.00
IUUC-Pva-102918	Pteropus vampyrus	56.25	1.00e-134	473.00
IUUC-Ptt-103879	Puccinia triticina	46.09	6.00e-98	351.00
IUUC-Pte-104419	Pyrenophora teres	44.31	2.00e-100	359.00
IUUC-Pyt-104718	Pyrenophora triticirepentis	47.06	2.00e-98	352.00
IUUC-Rno-105838	Rattus norvegicus	56.25	3.00e-135	476.00
IUUC-Sha-107435	Sarcophilus harrisii	55.96	3.00e-133	469.00
IUUC-Sit-109729	Setaria italica	80.09	0.00e+00	750.00
IUUC-Sar-113157	Sorex araneus	56.25	2.00e-134	473.00
IUUC-Sre-115085	Sporisorium reilianum	44.50	6.00e-97	347.00
IUUC-Ssc-116286	Sus scrofa	56.10	2.00e-133	470.00
IUUC-Tgu-117219	Taeniopygia guttata	56.91	9.00e-135	474.00
IUUC-Tru-117550	Takifugu rubripes	55.99	5.00e-133	467.00
IUUC-Tsy-119294	Tarsius syrichta	56.25	3.00e-135	476.00
IUUC-Tni-120561	Tetraodon nigroviridis	55.99	1.00e-134	474.00
IUUC-Ttr-128777	Tursiops truncatus	49.22	1.00e-106	381.00
IUUC-Vpa-130563	Vicugna pacos	51.85	8.00e-31	128.00
IUUC-Xtr-132630	Xenopus tropicalis	55.05	3.00e-137	483.00
IUUC-Xma-133665	Xiphophorus maculatus	55.99	1.00e-133	470.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence