iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sbi-114605

Ensembl Protein ID

Sb09g026780.1

UniProt Accession

A0A1B6P9J7; A0A1B6P9J7_SORBI

Genbank Protein ID

KXG22419.1

Protein Name

Eukaryotic translation initiation factor 3 subunit F; eIF-3-epsilon

Genbank Nucleotide ID

CM000768

Gene Name

SORBI_009G212300

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb09g026780	Sb09g026780.1	Sb09g026780.1

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
DUB/JAMM	39.16	1.00e-47	188.00	IUUC-Hsa-046860

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Sorghum bicolor

Functional Description
(View)

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.

Protein Sequence
(Fasta)

MAASNSNPKP IAQFMRNNNP LKKNYSQHFL IYPCGSPQTR ANPTRHGVQF VEGREVSRQA 60
ALNRREATGF GGNGRIEVVR RKGGARGRAC VPHHGAEALA GDGVPALVVR DCVALVGGAA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCGGCGT CTAACTCTAA CCCCAAACCA ATCGCACAAT TTATGAGGAA CAATAATCCA 60
TTAAAAAAGA ACTATTCCCA GCATTTCCTG ATCTACCCGT GCGGAAGCCC ACAGACGAGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0396--Initiation factor
KW-0648--Protein biosynthesis
KW-1185--Reference proteome

Interpro

IPR027531--eIF3f
IPR000555--JAMM/MPN+_dom
IPR024969--Rpn11/EIF3F_C

Pfam

PF01398--JAB
PF13012--MitMem_reg

SMART

SM00232--JAB_MPN

Gene Ontology

GO:0016282--C:eukaryotic 43S preinitiation complex
GO:0033290--C:eukaryotic 48S preinitiation complex
GO:0005852--C:eukaryotic translation initiation factor 3 complex
GO:0003743--F:translation initiation factor activity
GO:0001731--P:formation of translation preinitiation complex
GO:0006446--P:regulation of translational initiation

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001150	Aegilops tauschii	78.34	3.00e-127	447.00
IUUC-Aml-001527	Ailuropoda melanoleuca	38.87	3.00e-55	207.00
IUUC-Atr-002686	Amborella trichopoda	72.08	2.00e-103	367.00
IUUC-Apl-003977	Anas platyrhynchos	37.73	3.00e-46	177.00
IUUC-Aca-004335	Anolis carolinensis	39.16	3.00e-57	214.00
IUUC-Aly-005945	Arabidopsis lyrata	73.21	2.00e-111	394.00
IUUC-Ath-007045	Arabidopsis thaliana	71.70	7.00e-109	385.00
IUUC-Acl-008365	Aspergillus clavatus	35.29	8.00e-44	169.00
IUUC-Afl-008742	Aspergillus flavus	35.66	1.00e-42	166.00
IUUC-Afu-009030	Aspergillus fumigatus	35.29	4.00e-44	171.00
IUUC-Ani-009212	Aspergillus nidulans	34.66	2.00e-43	169.00
IUUC-Ang-009712	Aspergillus niger	35.02	1.00e-43	169.00
IUUC-Aor-009885	Aspergillus oryzae	35.66	5.00e-44	170.00
IUUC-Ate-010315	Aspergillus terreus	35.66	3.00e-42	164.00
IUUC-Ame-010801	Astyanax mexicanus	49.40	2.00e-19	88.60
IUUC-Bgr-011982	Blumeria graminis	34.93	3.00e-42	164.00
IUUC-Bta-012804	Bos taurus	38.87	2.00e-55	209.00
IUUC-Bci-013891	Botrytis cinerea	33.33	1.00e-35	142.00
IUUC-Bdi-014328	Brachypodium distachyon	81.88	3.00e-126	443.00
IUUC-Bol-015446	Brassica oleracea	72.45	4.00e-112	396.00
IUUC-Bra-016862	Brassica rapa	71.70	8.00e-111	392.00
IUUC-Cel-018171	Caenorhabditis elegans	27.02	3.00e-25	108.00
IUUC-Cja-019335	Callithrix jacchus	38.87	3.00e-55	207.00
IUUC-Cfa-020138	Canis familiaris	38.49	8.00e-55	206.00
IUUC-Cpo-022109	Cavia porcellus	35.66	4.00e-45	174.00
IUUC-Cre-022664	Chlamydomonas reinhardtii	42.65	7.00e-63	233.00
IUUC-Csa-023994	Chlorocebus sabaeus	38.87	3.00e-55	207.00
IUUC-Cho-024351	Choloepus hoffmanni	29.81	7.00e-32	130.00
IUUC-Cin-025801	Ciona intestinalis	37.88	5.00e-52	196.00
IUUC-Csv-025805	Ciona savignyi	38.26	2.00e-52	197.00
IUUC-Cgl-026643	Colletotrichum gloeosporioides	30.07	2.00e-34	138.00
IUUC-Cne-026868	Cryptococcus neoformans	29.53	1.00e-23	102.00
IUUC-Cme-027328	Cyanidioschyzon merolae	26.78	2.00e-20	92.00
IUUC-Dre-028085	Danio rerio	39.16	4.00e-55	207.00
IUUC-Dno-030099	Dasypus novemcinctus	38.87	5.00e-55	207.00
IUUC-Dor-030324	Dipodomys ordii	35.09	4.00e-46	177.00
IUUC-Dse-031314	Dothistroma septosporum	35.04	6.00e-45	173.00
IUUC-Dme-031926	Drosophila melanogaster	39.33	8.00e-52	196.00
IUUC-Ete-032569	Echinops telfairi	38.93	3.00e-52	197.00
IUUC-Eca-033502	Equus caballus	37.26	2.00e-50	192.00
IUUC-Eeu-034883	Erinaceus europaeus	31.87	4.00e-25	106.00
IUUC-Fca-035873	Felis catus	38.87	3.00e-55	207.00
IUUC-Fal-036921	Ficedula albicollis	39.54	2.00e-56	211.00
IUUC-Fox-037765	Fusarium oxysporum	29.71	5.00e-28	117.00
IUUC-Fso-038240	Fusarium solani	30.32	6.00e-29	120.00
IUUC-Gmo-038864	Gadus morhua	38.78	1.00e-56	212.00
IUUC-Ggr-039862	Gaeumannomyces graminis	28.88	2.00e-29	122.00
IUUC-Gga-040952	Gallus gallus	39.54	2.00e-56	211.00
IUUC-Gac-041677	Gasterosteus aculeatus	40.75	3.00e-60	224.00
IUUC-Gma-043061	Glycine max	75.09	7.00e-107	379.00
IUUC-Ggo-045591	Gorilla gorilla	38.87	3.00e-55	207.00
IUUC-Hsa-046860	Homo sapiens	38.87	3.00e-55	207.00
IUUC-Hvu-047410	Hordeum vulgare	88.51	7.00e-77	278.00
IUUC-Itr-048211	Ictidomys tridecemlineatus	39.25	9.00e-56	209.00
IUUC-Lch-049410	Latimeria chalumnae	49.23	6.00e-35	139.00
IUUC-Lpe-051102	Leersia perrieri	90.70	3.00e-132	463.00
IUUC-Loc-052016	Lepisosteus oculatus	36.88	6.00e-47	180.00
IUUC-Lma-053157	Leptosphaeria maculans	33.58	3.00e-44	171.00
IUUC-Laf-054568	Loxodonta africana	38.87	5.00e-55	207.00
IUUC-Mcc-054613	Macaca mulatta	38.87	3.00e-55	207.00
IUUC-Meu-056832	Macropus eugenii	22.01	1.00e-16	78.60
IUUC-Mor-057104	Magnaporthe oryzae	29.24	7.00e-30	123.00
IUUC-Mtr-058445	Medicago truncatula	75.09	2.00e-123	433.00
IUUC-Mla-059038	Melampsora laricipopulina	31.23	2.00e-33	135.00
IUUC-Mga-059548	Meleagris gallopavo	38.33	1.00e-48	185.00
IUUC-Mvi-060520	Microbotryum violaceum	26.26	7.00e-21	93.60
IUUC-Mdo-062376	Monodelphis domestica	38.11	3.00e-55	207.00
IUUC-Mmu-063254	Mus musculus	39.25	6.00e-56	210.00
IUUC-Mac-065635	Musa acuminata	71.58	8.00e-112	395.00
IUUC-Mpu-066314	Mustela putorius furo	38.87	3.00e-55	207.00
IUUC-Mlu-067512	Myotis lucifugus	39.16	2.00e-55	209.00
IUUC-Nfi-068262	Neosartorya fischeri	35.29	3.00e-44	171.00
IUUC-Ncr-068872	Neurospora crassa	30.77	2.00e-31	128.00
IUUC-Nle-070118	Nomascus leucogenys	38.87	4.00e-55	207.00
IUUC-Opr-071228	Ochotona princeps	37.55	5.00e-48	183.00
IUUC-Ont-072600	Oreochromis niloticus	39.16	7.00e-59	219.00
IUUC-Oan-073584	Ornithorhynchus anatinus	37.89	3.00e-48	184.00
IUUC-Ocu-074542	Oryctolagus cuniculus	38.87	1.00e-55	209.00
IUUC-Oba-075923	Oryza barthii	87.20	1.00e-135	474.00
IUUC-Obr-076313	Oryza brachyantha	91.47	1.00e-131	461.00
IUUC-Ogl-076932	Oryza glaberrima	87.20	1.00e-135	474.00
IUUC-Ogu-078152	Oryza glumaepatula	87.20	1.00e-135	474.00
IUUC-Oin-079528	Oryza indica	87.20	1.00e-135	474.00
IUUC-Olo-080401	Oryza longistaminata	87.20	1.00e-135	474.00
IUUC-Ome-081553	Oryza meridionalis	86.85	3.00e-135	473.00
IUUC-Oni-082090	Oryza nivara	87.20	1.00e-135	474.00
IUUC-Opu-083583	Oryza punctata	91.86	4.00e-132	462.00
IUUC-Oru-084492	Oryza rufipogon	87.20	1.00e-135	474.00
IUUC-Osa-085383	Oryza sativa	87.20	1.00e-135	474.00
IUUC-Ola-086835	Oryzias latipes	39.54	7.00e-59	219.00
IUUC-Olu-087716	Ostreococcus lucimarinus	36.67	4.00e-42	164.00
IUUC-Oga-088886	Otolemur garnettii	38.49	3.00e-55	207.00
IUUC-Oar-090079	Ovis aries	38.87	1.00e-55	208.00
IUUC-Ptr-091457	Pan troglodytes	38.87	3.00e-55	207.00
IUUC-Pan-092317	Papio anubis	34.24	3.00e-31	127.00
IUUC-Psi-093129	Pelodiscus sinensis	36.47	1.00e-49	189.00
IUUC-Pma-094488	Petromyzon marinus	41.44	1.00e-60	225.00
IUUC-Pno-095049	Phaeosphaeria nodorum	33.94	1.00e-45	175.00
IUUC-Ppa-095341	Physcomitrella patens	60.38	3.00e-103	367.00
IUUC-Pfo-096286	Poecilia formosa	38.78	2.00e-58	218.00
IUUC-Pab-097765	Pongo abelii	38.87	3.00e-55	207.00
IUUC-Pop-099131	Populus trichocarpa	75.09	3.00e-117	413.00
IUUC-Pca-100524	Procavia capensis	31.42	2.00e-31	127.00
IUUC-Ppe-101934	Prunus persica	77.36	6.00e-127	445.00
IUUC-Pva-102577	Pteropus vampyrus	39.54	1.00e-55	209.00
IUUC-Pgr-103521	Puccinia graminis	29.70	5.00e-33	134.00
IUUC-Pte-104304	Pyrenophora teres	33.94	1.00e-45	175.00
IUUC-Pyt-104563	Pyrenophora triticirepentis	33.94	3.00e-45	174.00
IUUC-Rno-105717	Rattus norvegicus	39.25	5.00e-56	210.00
IUUC-Sha-107190	Sarcophilus harrisii	38.31	2.00e-54	205.00
IUUC-Sja-107918	Schizosaccharomyces japonicus	34.06	2.00e-41	161.00
IUUC-Spo-108355	Schizosaccharomyces pombe	32.25	1.00e-39	155.00
IUUC-Smo-109374	Selaginella moellendorffii	62.64	7.00e-106	375.00
IUUC-Sit-110119	Setaria italica	97.74	7.00e-143	498.00
IUUC-Sly-111570	Solanum lycopersicum	75.09	1.00e-104	371.00
IUUC-Stu-112308	Solanum tuberosum	73.96	1.00e-112	398.00
IUUC-Sar-113515	Sorex araneus	36.84	6.00e-15	72.80
IUUC-Sre-114906	Sporisorium reilianum	35.34	6.00e-43	166.00
IUUC-Tgu-117087	Taeniopygia guttata	37.89	2.00e-48	184.00
IUUC-Tru-117700	Takifugu rubripes	39.92	5.00e-61	226.00
IUUC-Tni-120470	Tetraodon nigroviridis	39.16	1.00e-58	218.00
IUUC-Tca-121109	Theobroma cacao	76.23	3.00e-108	383.00
IUUC-Tre-122095	Trichoderma reesei	30.22	1.00e-29	122.00
IUUC-Tvi-122580	Trichoderma virens	29.86	7.00e-29	120.00
IUUC-Tae-125129	Triticum aestivum	86.46	3.00e-134	469.00
IUUC-Tur-126658	Triticum urartu	77.57	3.00e-121	426.00
IUUC-Tme-127043	Tuber melanosporum	35.16	8.00e-44	169.00
IUUC-Tbe-127927	Tupaia belangeri	38.87	3.00e-55	207.00
IUUC-Ttr-129231	Tursiops truncatus	38.87	2.00e-55	208.00
IUUC-Uma-129578	Ustilago maydis	35.21	6.00e-42	163.00
IUUC-Vda-129730	Verticillium dahliae	30.43	3.00e-34	137.00
IUUC-Vpa-130677	Vicugna pacos	55.17	1.10e-02	33.50
IUUC-Vvi-130968	Vitis vinifera	75.76	6.00e-116	409.00
IUUC-Xtr-132203	Xenopus tropicalis	39.16	9.00e-54	202.00
IUUC-Xma-133972	Xiphophorus maculatus	38.78	3.00e-58	217.00
IUUC-Yli-134553	Yarrowia lipolytica	31.73	1.00e-33	136.00
IUUC-Zma-134941	Zea mays	96.60	1.00e-131	461.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence