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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Cel-018485
Ensembl Protein ID F43D9.6
UniProt Accession B3CKG1; C0P277; URM1_CAEEL
Genbank Protein ID CAP69839.1; CAX51654.1
Protein Name Ubiquitin-related modifier 1 homolog
Genbank Nucleotide ID AM933233; Z35640
Gene Name urm-1; F43D9.6
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
WBGene00185048 F43D9.6 F43D9.6
Annotation
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
ULD/UDP/UBQ/UBQ_Other 33.00 6.00e-10 57.00 IUUC-Sce-106366
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Caenorhabditis elegans
Functional Description
(View)

Functional Description


     Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by being thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. Also acts as a ubiquitin-like protein (UBL) that is covalently conjugated via an isopeptide bond to lysine residues of target proteins. The thiocarboxylated form serves as substrate for conjugation and oxidative stress specifically induces the formation of UBL-protein conjugates.
 Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by being thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. Also acts as a ubiquitin-like protein (UBL) that is covalently conjugated via an isopeptide bond to lysine residues of target proteins. The thiocarboxylated form serves as substrate for conjugation and oxidative stress specifically induces the formation of UBL-protein conjugates.
Protein Sequence
(Fasta)
MSTIPVTIDF SGGAEFLVKA KAQKVQIPAD STLRDVLKFV RDNLVTDVHR INMLLNDDAS 60
EVAHGVITLI NDTDTGLLLE YDTVIEAGDT ITFVSTLHGG
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Protein Fasta Sequence


>IUUC-Cel-018485|ULD,UBQ_Other|Caenorhabditis elegans
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Nucleotide Sequence
(Fasta)
ATGAGCACAA TTCCAGTCAC AATTGATTTT TCCGGCGGAG CCGAGTTTCT CGTCAAAGCA 60
AAAGCACAAA AGGTTCAGAT TCCGGCAGGT ACTTGATTTT TGAATTTTAA AAACGAATTT 120
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Nucleotide Fasta Sequence


>IUUC-Cel-018485|ULD,UBQ_Other|Caenorhabditis elegans
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Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-1017--Isopeptide bond
KW-1185--Reference proteome
KW-0819--tRNA processing
KW-0833--Ubl conjugation pathway
Interpro

IPR012675--Beta-grasp_dom
IPR016155--Mopterin_synth/thiamin_S_b
IPR015221--Urm1
Pfam

PF09138--Urm1
Gene Ontology

GO:0005737--C:cytoplasm
GO:0034227--P:tRNA thio-modification
KEGG cel:CELE_F43D9.6
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-002254 Ailuropoda melanoleuca 33.01 7.00e-12 60.50
IUUC-Atr-003089 Amborella trichopoda 37.62 5.00e-13 64.30
IUUC-Apl-003382 Anas platyrhynchos 34.74 2.00e-11 58.90
IUUC-Aca-004981 Anolis carolinensis 32.04 1.00e-11 59.70
IUUC-Aly-005517 Arabidopsis lyrata 41.67 1.00e-11 59.70
IUUC-Ath-006718 Arabidopsis thaliana 43.48 1.00e-09 53.10
IUUC-Ago-007917 Ashbya gossypii 32.35 8.00e-11 57.00
IUUC-Acl-008054 Aspergillus clavatus 51.28 8.00e-06 40.00
IUUC-Afl-008704 Aspergillus flavus 36.92 1.00e-06 42.70
IUUC-Aor-009890 Aspergillus oryzae 32.38 2.00e-09 53.10
IUUC-Bta-012448 Bos taurus 33.01 1.00e-11 60.10
IUUC-Bci-013865 Botrytis cinerea 33.33 2.00e-09 52.40
IUUC-Bdi-014980 Brachypodium distachyon 37.50 2.00e-08 49.70
IUUC-Bol-016055 Brassica oleracea 42.03 2.00e-09 52.40
IUUC-Bra-016845 Brassica rapa 42.03 2.00e-09 52.40
IUUC-Cja-019587 Callithrix jacchus 33.98 5.00e-12 61.20
IUUC-Cfa-020653 Canis familiaris 33.98 6.00e-12 60.80
IUUC-Cpo-021622 Cavia porcellus 33.98 5.00e-12 61.20
IUUC-Cre-023015 Chlamydomonas reinhardtii 32.35 9.00e-09 50.10
IUUC-Csa-023756 Chlorocebus sabaeus 32.05 7.00e-06 41.60
IUUC-Cgl-026518 Colletotrichum gloeosporioides 30.77 7.00e-08 47.80
IUUC-Cne-026953 Cryptococcus neoformans 31.48 9.00e-09 51.20
IUUC-Cme-027314 Cyanidioschyzon merolae 34.02 2.00e-10 55.80
IUUC-Dre-027884 Danio rerio 32.04 1.00e-10 56.60
IUUC-Dno-029262 Dasypus novemcinctus 30.86 6.00e-05 38.90
IUUC-Dor-030601 Dipodomys ordii 36.76 3.00e-05 38.90
IUUC-Dme-031893 Drosophila melanogaster 35.00 2.00e-11 59.30
IUUC-Ete-032773 Echinops telfairi 35.00 2.00e-11 58.90
IUUC-Eca-034187 Equus caballus 34.95 3.00e-12 62.00
IUUC-Eeu-034808 Erinaceus europaeus 32.04 2.00e-11 58.90
IUUC-Fca-036107 Felis catus 33.98 7.00e-12 60.50
IUUC-Fal-036607 Ficedula albicollis 33.68 2.00e-11 58.50
IUUC-Fox-037698 Fusarium oxysporum 37.62 1.00e-08 50.10
IUUC-Gmo-039492 Gadus morhua 33.33 9.00e-10 53.50
IUUC-Ggr-039965 Gaeumannomyces graminis 31.13 6.00e-09 51.60
IUUC-Gga-041268 Gallus gallus 32.04 2.00e-12 62.80
IUUC-Gac-042111 Gasterosteus aculeatus 34.95 2.00e-11 59.30
IUUC-Gma-043240 Glycine max 38.24 4.00e-08 47.80
IUUC-Ggo-045176 Gorilla gorilla 28.95 3.00e-03 32.70
IUUC-Hsa-046077 Homo sapiens 31.68 2.00e-09 52.40
IUUC-Itr-048111 Ictidomys tridecemlineatus 34.07 7.00e-08 47.00
IUUC-Kpa-049157 Komagataella pastoris 29.59 9.00e-08 47.00
IUUC-Lch-049889 Latimeria chalumnae 30.10 5.00e-10 54.30
IUUC-Lpe-050783 Leersia perrieri 36.90 9.00e-08 47.00
IUUC-Loc-052400 Lepisosteus oculatus 33.01 3.00e-11 58.50
IUUC-Lma-053259 Leptosphaeria maculans 32.38 8.00e-08 47.40
IUUC-Laf-053596 Loxodonta africana 33.33 1.00e-10 57.00
IUUC-Mcc-054845 Macaca mulatta 34.78 1.00e-09 52.80
IUUC-Meu-055968 Macropus eugenii 34.95 5.00e-12 61.20
IUUC-Mor-057126 Magnaporthe oryzae 31.43 1.00e-05 40.40
IUUC-Mpo-057311 Magnaporthe poae 33.33 6.00e-08 48.50
IUUC-Mtr-058266 Medicago truncatula 39.13 1.00e-08 50.10
IUUC-Mla-058847 Melampsora laricipopulina 40.48 2.00e-04 36.20
IUUC-Mga-059468 Meleagris gallopavo 34.74 8.00e-12 60.10
IUUC-Mvi-060235 Microbotryum violaceum 41.18 1.00e-07 47.80
IUUC-Mdo-061948 Monodelphis domestica 34.95 6.00e-12 60.80
IUUC-Mmu-063946 Mus musculus 34.95 2.00e-12 62.40
IUUC-Mac-064812 Musa acuminata 43.48 4.00e-10 54.70
IUUC-Mpu-066763 Mustela putorius furo 35.92 7.00e-13 63.90
IUUC-Mlu-066970 Myotis lucifugus 30.86 4.00e-06 40.80
IUUC-Ncr-068824 Neurospora crassa 34.62 1.00e-09 53.90
IUUC-Nle-069849 Nomascus leucogenys 32.05 6.00e-06 42.00
IUUC-Opr-070227 Ochotona princeps 33.98 5.00e-12 61.20
IUUC-Ont-072530 Oreochromis niloticus 33.01 1.00e-11 59.70
IUUC-Oan-073191 Ornithorhynchus anatinus 34.38 7.00e-09 50.40
IUUC-Ocu-074460 Oryctolagus cuniculus 35.35 9.00e-12 60.10
IUUC-Oba-075499 Oryza barthii 39.71 5.00e-08 48.90
IUUC-Obr-076896 Oryza brachyantha 38.24 2.00e-07 47.80
IUUC-Ogl-077834 Oryza glaberrima 37.65 3.00e-08 48.50
IUUC-Ogu-078622 Oryza glumaepatula 37.65 3.00e-08 48.50
IUUC-Oin-079358 Oryza indica 39.71 6.00e-08 49.30
IUUC-Olo-081035 Oryza longistaminata 36.00 3.00e-09 53.10
IUUC-Oni-082425 Oryza nivara 37.65 3.00e-08 48.50
IUUC-Opu-083461 Oryza punctata 36.90 2.00e-07 46.60
IUUC-Oru-084875 Oryza rufipogon 35.62 3.00e-07 44.70
IUUC-Oga-089128 Otolemur garnettii 35.92 1.00e-12 62.80
IUUC-Oar-089896 Ovis aries 33.01 1.00e-11 60.10
IUUC-Ptr-091618 Pan troglodytes 28.95 3.00e-03 32.70
IUUC-Pan-092238 Papio anubis 32.05 7.00e-06 41.60
IUUC-Psi-093879 Pelodiscus sinensis 33.01 2.00e-12 62.40
IUUC-Pma-094484 Petromyzon marinus 38.82 7.00e-09 50.40
IUUC-Ppa-095801 Physcomitrella patens 36.05 4.00e-10 54.70
IUUC-Pfo-097192 Poecilia formosa 33.98 2.00e-10 55.80
IUUC-Pab-098203 Pongo abelii 31.68 3.00e-09 52.00
IUUC-Pop-099614 Populus trichocarpa 43.48 9.00e-11 57.00
IUUC-Pca-100507 Procavia capensis 29.63 7.00e-06 40.00
IUUC-Ppe-101174 Prunus persica 35.92 1.00e-12 63.50
IUUC-Pva-102735 Pteropus vampyrus 32.35 4.00e-12 61.20
IUUC-Pgr-103510 Puccinia graminis 27.55 2.00e-07 46.20
IUUC-Ptt-103918 Puccinia triticina 25.00 1.00e-05 40.40
IUUC-Pte-104173 Pyrenophora teres 33.96 3.00e-10 55.50
IUUC-Pyt-104806 Pyrenophora triticirepentis 33.96 4.00e-10 55.10
IUUC-Rno-105820 Rattus norvegicus 34.95 5.00e-12 61.20
IUUC-Sce-106366 Saccharomyces cerevisiae 33.00 9.00e-11 57.00
IUUC-Sja-107727 Schizosaccharomyces japonicus 32.32 2.00e-07 46.20
IUUC-Spo-108074 Schizosaccharomyces pombe 51.28 1.60e-02 29.30
IUUC-Smo-108944 Selaginella moellendorffii 35.16 7.00e-09 50.40
IUUC-Sit-110277 Setaria italica 35.29 2.00e-08 49.30
IUUC-Sly-111505 Solanum lycopersicum 40.58 4.00e-10 54.70
IUUC-Stu-112076 Solanum tuberosum 40.58 4.00e-10 54.70
IUUC-Sbi-114274 Sorghum bicolor 37.04 4.00e-09 51.60
IUUC-Sre-114953 Sporisorium reilianum 32.41 4.00e-11 58.20
IUUC-Ssc-115418 Sus scrofa 34.95 5.00e-12 61.20
IUUC-Tgu-117311 Taeniopygia guttata 34.74 2.00e-11 58.50
IUUC-Tru-118598 Takifugu rubripes 32.98 4.00e-09 51.20
IUUC-Tni-120109 Tetraodon nigroviridis 31.07 8.00e-11 57.00
IUUC-Tca-120942 Theobroma cacao 34.74 7.00e-09 50.40
IUUC-Tre-122099 Trichoderma reesei 31.96 1.00e-05 39.70
IUUC-Tvi-122285 Trichoderma virens 32.69 1.00e-07 47.00
IUUC-Tae-125193 Triticum aestivum 40.00 1.00e-09 52.80
IUUC-Tur-126677 Triticum urartu 36.84 4.00e-08 48.50
IUUC-Tme-127120 Tuber melanosporum 33.96 2.00e-11 59.70
IUUC-Tbe-128050 Tupaia belangeri 28.00 8.00e-06 40.40
IUUC-Ttr-129019 Tursiops truncatus 34.31 9.00e-12 60.10
IUUC-Uma-129483 Ustilago maydis 32.71 8.00e-10 53.90
IUUC-Vda-129690 Verticillium dahliae 55.56 8.00e-06 40.80
IUUC-Vvi-131174 Vitis vinifera 43.48 1.00e-10 56.60
IUUC-Xma-133862 Xiphophorus maculatus 33.98 2.00e-10 55.80
IUUC-Yli-134398 Yarrowia lipolytica 35.35 1.00e-09 52.80
IUUC-Zma-134964 Zea mays 38.37 2.00e-09 52.40
Created Date 25-Jun-2017

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