iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSRNOG00000027057.6	ENSRNOT00000064776.2	ENSRNOP00000060463.1
ENSRNOG00000027057.6	ENSRNOT00000089894.1	ENSRNOP00000069301.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC	RAID2
Post-translational Modifications (PTMs)
dbPAF
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/GAT	1.70e-47	161.1	171	297

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/GAT

   S: 1    deeksklLerLlkskkPeDLreAnkLikelvkededkaekikkliseleevksnvkllnemlselspegeepednellqelyetckaar 89
           deeksklL++Ll+sk+P+DL+eAn+Lik++vkede++++k++k++++leev++nvkll eml ++s+e ++++d+el++el+++c+++r
   Q: 171  DEEKSKLLAKLLRSKNPDDLQEANQLIKSMVKEDEARIQKVTKRLHTLEEVNNNVKLLHEMLLHYSQEFSSEADKELMKELFDRCENKR 259
           79*************************************************************************************** PP
   S: 90   pkllklieeeedndellaellkanDelnqvlnkykqlk 127
           ++l+kl++e+ednd++l+++l+a+D+l++v+n+yk+++
   Q: 260  RTLFKLASETEDNDNSLGDILQASDNLSRVINSYKTII 297
           ***********************************997 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MAEAEGESLE SWLNKATNPS NRQEDWEYII GFCDQINKEL EGPQIAVRLL AHKIQSPQEW 60
EAVQALTVLE ACMKNCGRRL HNEVGKFRFL NELIKVVSPK YLGDRVSEKV KAKVIELLFS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CAGCCGCAGC TTTGATGAGC TGGGTTTTCT TGAGCTCCAG GTCATACTTC TCCTCTTCGG 60
TGAGTTCCGA CACCTGCTTG CGGTAATGTT CCTTGTCAAT CAAGGGGTCC CTGAATTCGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR008152--Clathrin_a/b/g-adaptin_app_Ig
IPR008153--Clathrin_g-adaptin_app
IPR013041--Coatomer/clathrin_app_Ig-like
IPR008942--ENTH_VHS
IPR004152--GAT_dom
IPR027422--GGA3
IPR002014--VHS_dom

PROSITE

PS50180--GAE
PS50909--GAT
PS50179--VHS

Pfam

PF02883--Alpha_adaptinC2
PF03127--GAT
PF00790--VHS

SMART

SM00809--Alpha_adaptinC2
SM00288--VHS

Gene Ontology

GO:0030131--C:clathrin adaptor complex
GO:0005802--C:trans-Golgi network
GO:0006886--P:intracellular protein transport
GO:0045732--P:positive regulation of protein catabolic process
GO:0016192--P:vesicle-mediated transport

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002322	Ailuropoda melanoleuca	84.19	0.00e+00	930.00
IUUC-Apl-003683	Anas platyrhynchos	69.96	0.00e+00	817.00
IUUC-Aca-004859	Anolis carolinensis	83.99	8.00e-138	484.00
IUUC-Ago-007767	Ashbya gossypii	26.69	3.00e-17	83.20
IUUC-Ame-010868	Astyanax mexicanus	73.27	6.00e-130	457.00
IUUC-Bta-013431	Bos taurus	71.21	5.00e-178	617.00
IUUC-Cel-018437	Caenorhabditis elegans	29.33	3.00e-32	133.00
IUUC-Cja-019158	Callithrix jacchus	84.84	0.00e+00	989.00
IUUC-Cfa-020509	Canis familiaris	84.31	0.00e+00	964.00
IUUC-Cpo-021520	Cavia porcellus	85.81	0.00e+00	1006.00
IUUC-Csa-023292	Chlorocebus sabaeus	85.38	0.00e+00	1002.00
IUUC-Cho-025040	Choloepus hoffmanni	86.50	3.00e-74	272.00
IUUC-Cin-025211	Ciona intestinalis	54.88	6.00e-91	328.00
IUUC-Cgl-026721	Colletotrichum gloeosporioides	24.43	2.00e-17	84.30
IUUC-Dre-028244	Danio rerio	69.76	2.00e-130	459.00
IUUC-Dno-029654	Dasypus novemcinctus	80.82	0.00e+00	968.00
IUUC-Ete-033003	Echinops telfairi	76.18	1.00e-124	440.00
IUUC-Eca-034436	Equus caballus	84.58	0.00e+00	1006.00
IUUC-Eeu-034519	Erinaceus europaeus	88.42	6.00e-170	590.00
IUUC-Fca-035372	Felis catus	83.13	0.00e+00	921.00
IUUC-Fal-037437	Ficedula albicollis	70.04	0.00e+00	813.00
IUUC-Fox-037776	Fusarium oxysporum	25.24	4.00e-17	83.20
IUUC-Fso-038382	Fusarium solani	26.14	5.00e-18	86.30
IUUC-Gmo-038952	Gadus morhua	72.67	4.00e-139	488.00
IUUC-Gga-041130	Gallus gallus	70.86	0.00e+00	841.00
IUUC-Gac-041460	Gasterosteus aculeatus	71.34	6.00e-137	481.00
IUUC-Ggo-044495	Gorilla gorilla	83.36	0.00e+00	1001.00
IUUC-Hsa-046184	Homo sapiens	85.79	0.00e+00	1011.00
IUUC-Itr-048345	Ictidomys tridecemlineatus	87.60	0.00e+00	1019.00
IUUC-Lch-049582	Latimeria chalumnae	65.53	0.00e+00	770.00
IUUC-Loc-051903	Lepisosteus oculatus	75.67	1.00e-134	473.00
IUUC-Laf-054207	Loxodonta africana	82.26	0.00e+00	920.00
IUUC-Mcc-055642	Macaca mulatta	85.25	0.00e+00	1004.00
IUUC-Meu-056386	Macropus eugenii	69.53	6.00e-112	398.00
IUUC-Mga-060101	Meleagris gallopavo	70.31	0.00e+00	811.00
IUUC-Mmr-060937	Microcebus murinus	85.93	0.00e+00	1002.00
IUUC-Mdo-062835	Monodelphis domestica	73.65	0.00e+00	727.00
IUUC-Mmu-064008	Mus musculus	93.67	0.00e+00	1101.00
IUUC-Mpu-066397	Mustela putorius furo	83.90	0.00e+00	923.00
IUUC-Mlu-067731	Myotis lucifugus	84.99	0.00e+00	1061.00
IUUC-Nle-069975	Nomascus leucogenys	87.02	2.00e-137	483.00
IUUC-Opr-070313	Ochotona princeps	79.73	0.00e+00	842.00
IUUC-Ont-072399	Oreochromis niloticus	72.75	5.00e-139	488.00
IUUC-Ocu-074749	Oryctolagus cuniculus	80.87	0.00e+00	956.00
IUUC-Ola-086409	Oryzias latipes	66.86	2.00e-129	456.00
IUUC-Oga-088203	Otolemur garnettii	83.63	0.00e+00	879.00
IUUC-Oar-089423	Ovis aries	79.08	0.00e+00	958.00
IUUC-Ptr-090623	Pan troglodytes	83.83	0.00e+00	888.00
IUUC-Pan-092274	Papio anubis	85.52	0.00e+00	996.00
IUUC-Psi-093397	Pelodiscus sinensis	68.74	0.00e+00	804.00
IUUC-Pma-094269	Petromyzon marinus	71.59	1.00e-107	382.00
IUUC-Pfo-096335	Poecilia formosa	70.33	5.00e-133	468.00
IUUC-Pab-097977	Pongo abelii	81.36	0.00e+00	924.00
IUUC-Pca-100991	Procavia capensis	74.26	0.00e+00	769.00
IUUC-Pva-102285	Pteropus vampyrus	83.74	0.00e+00	1031.00
IUUC-Sha-106548	Sarcophilus harrisii	74.86	0.00e+00	847.00
IUUC-Sja-107801	Schizosaccharomyces japonicus	24.36	4.00e-15	76.30
IUUC-Ssc-116343	Sus scrofa	78.53	0.00e+00	921.00
IUUC-Tgu-117119	Taeniopygia guttata	71.16	0.00e+00	844.00
IUUC-Tru-118049	Takifugu rubripes	74.75	4.00e-134	472.00
IUUC-Tsy-119623	Tarsius syrichta	79.39	0.00e+00	906.00
IUUC-Tni-120803	Tetraodon nigroviridis	50.84	0.00e+00	671.00
IUUC-Ttr-129167	Tursiops truncatus	78.30	0.00e+00	933.00
IUUC-Vda-129948	Verticillium dahliae	24.18	1.00e-15	78.60
IUUC-Xtr-132922	Xenopus tropicalis	75.23	9.00e-146	510.00
IUUC-Xma-133566	Xiphophorus maculatus	70.21	1.00e-133	470.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence