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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Ath-007406
UUCD1 version UUC-ArT-00836
Ensembl Protein ID AT5G44800.1
UniProt Accession F4KBP5; O48579; Q8GX65; CHR4_ARATH
Genbank Protein ID BAB08833.1; AAC79140.1; AED95164.1; BAC43019.1
Protein Name Protein CHROMATIN REMODELING 4; Protein PICKLE RELATED 1
Genbank Nucleotide ID AB016874; AC002342; CP002688; AK118410
Gene Name CHR4; PKR1; At5g44800; K23L20_15; T19K24.8
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT5G44800 AT5G44800.1 AT5G44800.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
HINT
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 activity/RING/PHD 9.50e-09 36.2 78 120
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 activity/RING/PHD
   S: 4    ClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCr 52
           C +C+ gg+    l++C+ C + +H aCl+++  +  pn + wiCpkC+
   Q: 78   CVICDLGGD----LLCCDSCPRTYHTACLNPP-LKRIPNGK-WICPKCS 120
           *********....*******************.*******7.******7 PP
   
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description


     Chromatin-remodeling protein that binds DNA through histones and regulates gene transcription. May specifically recognize and bind trimethylated 'Lys-27' (H3K27me3) and non-methylated 'Lys-4' of histone H3 (By similarity). Probable chromatin remodeling factor.
 Chromatin-remodeling protein that binds DNA through histones and regulates gene transcription. May specifically recognize and bind trimethylated 'Lys-27' (H3K27me3) and non-methylated 'Lys-4' of histone H3 (By similarity). Probable chromatin remodeling factor.
Protein Sequence
(Fasta)
MKDSGSEMIK RDWVMKQKRR KLPSILDILD QKVDSSMAFD SPEYTSSSKP SKQRLKTDST 60
PERNSSKRKG NDGNYFECVI CDLGGDLLCC DSCPRTYHTA CLNPPLKRIP NGKWICPKCS 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Ath-007406|E3,PHD|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CTCTCTGTCT AGTAGTATCT AAACGAATTT AACTAAAACC AGCTAAAAAC AAGAAGCATA 60
AAAATAATAT CAAAGTAGAA ACTAAAGGAT CTAATAAGTA AGACAAAATT CGAAATTAAG 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ath-007406|E3,PHD|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0067--ATP-binding
KW-0156--Chromatin regulator
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0238--DNA-binding
KW-0347--Helicase
KW-0378--Hydrolase
KW-0479--Metal-binding
KW-0547--Nucleotide-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0862--Zinc
KW-0863--Zinc-finger
Interpro

IPR000953--Chromo/chromo_shadow_dom
IPR023780--Chromo_domain
IPR016197--Chromodomain-like
IPR009463--DUF1087
IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR009057--Homeobox-like
IPR027417--P-loop_NTPase
IPR000330--SNF2_N
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD
PROSITE

PS50013--CHROMO_2
PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2
Pfam

PF00385--Chromo
PF06465--DUF1087
PF00271--Helicase_C
PF00628--PHD
PF00176--SNF2_N
SMART

SM00298--CHROMO
SM00487--DEXDc
SM01147--DUF1087
SM00490--HELICc
SM00249--PHD
Gene Ontology

GO:0005634--C:nucleus
GO:0005524--F:ATP binding
GO:0003677--F:DNA binding
GO:0004386--F:helicase activity
GO:0008270--F:zinc ion binding
GO:0016569--P:covalent chromatin modification
KEGG ath:AT5G44800
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001701 Ailuropoda melanoleuca 39.11 2.00e-140 494.00
IUUC-Apl-003406 Anas platyrhynchos 39.68 7.00e-139 488.00
IUUC-Aca-004560 Anolis carolinensis 40.16 1.00e-143 504.00
IUUC-Aly-005645 Arabidopsis lyrata 90.77 0.00e+00 3654.00
IUUC-Ame-011352 Astyanax mexicanus 40.81 1.00e-147 518.00
IUUC-Bta-012868 Bos taurus 40.40 3.00e-143 503.00
IUUC-Bol-016073 Brassica oleracea 78.29 0.00e+00 3185.00
IUUC-Bra-016724 Brassica rapa 79.38 0.00e+00 3201.00
IUUC-Cel-018108 Caenorhabditis elegans 40.53 1.00e-140 494.00
IUUC-Cja-019018 Callithrix jacchus 40.28 2.00e-143 503.00
IUUC-Cfa-021055 Canis familiaris 40.40 7.00e-143 501.00
IUUC-Cpo-021523 Cavia porcellus 40.28 1.00e-142 501.00
IUUC-Csa-023084 Chlorocebus sabaeus 39.77 4.00e-143 503.00
IUUC-Cho-024361 Choloepus hoffmanni 40.51 6.00e-120 425.00
IUUC-Csv-025847 Ciona savignyi 37.56 2.00e-134 473.00
IUUC-Dre-028043 Danio rerio 40.72 5.00e-145 509.00
IUUC-Dno-029656 Dasypus novemcinctus 39.30 4.00e-143 502.00
IUUC-Dor-030167 Dipodomys ordii 40.07 9.00e-142 498.00
IUUC-Dme-032150 Drosophila melanogaster 36.67 2.00e-135 476.00
IUUC-Ete-032757 Echinops telfairi 38.82 1.00e-120 428.00
IUUC-Eca-034372 Equus caballus 39.11 3.00e-141 496.00
IUUC-Eeu-034634 Erinaceus europaeus 42.88 1.00e-91 332.00
IUUC-Fca-036043 Felis catus 40.28 1.00e-142 501.00
IUUC-Fal-037282 Ficedula albicollis 39.24 1.00e-139 491.00
IUUC-Gmo-038957 Gadus morhua 42.48 1.00e-140 494.00
IUUC-Gga-040607 Gallus gallus 39.52 1.00e-142 501.00
IUUC-Gac-041375 Gasterosteus aculeatus 39.93 2.00e-149 523.00
IUUC-Gma-043999 Glycine max 45.39 1.00e-160 560.00
IUUC-Ggo-044514 Gorilla gorilla 39.89 2.00e-143 504.00
IUUC-Hsa-046181 Homo sapiens 39.66 2.00e-143 503.00
IUUC-Itr-048463 Ictidomys tridecemlineatus 40.28 3.00e-142 499.00
IUUC-Lch-050343 Latimeria chalumnae 38.70 1.00e-147 517.00
IUUC-Loc-052383 Lepisosteus oculatus 39.11 6.00e-134 472.00
IUUC-Laf-053870 Loxodonta africana 40.40 8.00e-143 501.00
IUUC-Mcc-055856 Macaca mulatta 39.89 2.00e-143 503.00
IUUC-Meu-056292 Macropus eugenii 33.61 5.00e-48 186.00
IUUC-Mga-059630 Meleagris gallopavo 39.59 4.00e-143 502.00
IUUC-Mmr-060986 Microcebus murinus 39.56 7.00e-142 498.00
IUUC-Mdo-062971 Monodelphis domestica 40.16 2.00e-140 493.00
IUUC-Mmu-063644 Mus musculus 39.95 6.00e-143 502.00
IUUC-Mpu-066528 Mustela putorius furo 39.22 4.00e-141 496.00
IUUC-Mlu-067355 Myotis lucifugus 40.28 7.00e-143 501.00
IUUC-Nle-069824 Nomascus leucogenys 40.00 1.00e-144 507.00
IUUC-Opr-070960 Ochotona princeps 39.28 4.00e-135 476.00
IUUC-Ont-072418 Oreochromis niloticus 39.53 7.00e-142 498.00
IUUC-Oan-072885 Ornithorhynchus anatinus 40.03 2.00e-104 374.00
IUUC-Ocu-074438 Oryctolagus cuniculus 40.28 2.00e-142 500.00
IUUC-Ola-086880 Oryzias latipes 39.82 5.00e-143 502.00
IUUC-Oga-088775 Otolemur garnettii 39.45 1.00e-141 498.00
IUUC-Oar-089784 Ovis aries 40.40 6.00e-143 502.00
IUUC-Ptr-090586 Pan troglodytes 39.54 2.00e-142 500.00
IUUC-Pan-092282 Papio anubis 39.89 1.00e-143 504.00
IUUC-Psi-093007 Pelodiscus sinensis 39.41 6.00e-142 498.00
IUUC-Ppa-095491 Physcomitrella patens 60.50 0.00e+00 952.00
IUUC-Pfo-096265 Poecilia formosa 40.51 5.00e-151 529.00
IUUC-Pab-097677 Pongo abelii 39.66 6.00e-143 502.00
IUUC-Pca-100829 Procavia capensis 42.50 2.00e-138 486.00
IUUC-Pva-103186 Pteropus vampyrus 39.30 8.00e-142 498.00
IUUC-Rno-105378 Rattus norvegicus 39.15 3.00e-141 496.00
IUUC-Sha-107233 Sarcophilus harrisii 40.16 5.00e-140 492.00
IUUC-Smo-108946 Selaginella moellendorffii 61.38 0.00e+00 1024.00
IUUC-Sly-110976 Solanum lycopersicum 41.33 2.00e-158 553.00
IUUC-Ssc-116303 Sus scrofa 39.38 1.00e-141 497.00
IUUC-Tgu-116779 Taeniopygia guttata 39.35 2.00e-138 487.00
IUUC-Tru-118648 Takifugu rubripes 41.20 9.00e-153 535.00
IUUC-Tsy-119261 Tarsius syrichta 41.63 7.00e-120 425.00
IUUC-Tni-120039 Tetraodon nigroviridis 40.62 4.00e-146 512.00
IUUC-Tbe-128117 Tupaia belangeri 40.11 3.00e-81 296.00
IUUC-Ttr-128301 Tursiops truncatus 38.70 5.00e-137 482.00
IUUC-Vpa-130209 Vicugna pacos 43.35 3.00e-69 257.00
IUUC-Vvi-130849 Vitis vinifera 41.72 2.00e-158 553.00
IUUC-Xtr-132668 Xenopus tropicalis 42.94 6.00e-133 468.00
Created Date 25-Jun-2017

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