iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Cgl-026495

Ensembl Protein ID

ELA28621

UniProt Accession

L2FRD3; L2FRD3_COLGN

Genbank Protein ID

ELA28621.1

Protein Name

Nucleotide excision repair protein rad23

Genbank Nucleotide ID

KB020913

Gene Name

CGGC5_10806

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
CGGC5_10806	ELA28621	ELA28621

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/UBA	6.00e-20	70.4	143	182
ULD/UDP/UBQ/UBQ_PIM	5.80e-24	83.5	1	75

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 2    ededkleqlveMGFdreealqaLraannnleaAveyLldg 41
           +++++++++++MGF+r+++  a+raa++n+++AveyLl+g
   Q: 143  QRQEVIANMEAMGFERSQIDAAMRAAFYNPDRAVEYLLNG 182
           5799**********************************86 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesgvppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkksk 75
           mk+t+k lk+++f+l+v++ d ++++K+kia e+g +p++qkLIy+GkiLkDd+t+++++i+++ +v+++v+k+k
   Q: 1    MKVTFKDLKQQKFTLDVEPTDLISAVKQKIAGEKGWDPKDQKLIYSGKILKDDDTVESYKIEEKGFVVCMVNKPK 75
           99**********************************************************************987 PP

Organism

Colletotrichum gloeosporioides

Protein Sequence
(Fasta)

MKVTFKDLKQ QKFTLDVEPT DLISAVKQKI AGEKGWDPKD QKLIYSGKIL KDDDTVESYK 60
IEEKGFVVCM VNKPKAPKPA PAESSSXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAAGGTCA CATTCAAGGT ACGCAGCTCC GCCCTCCGAG CCCGCGATCC CACGCCTCTT 60
CGCATTGCGC TCTTCCCTCT CAGCCGACCC GCCCCGAGCT CCAGCTAATC GTTTTACTCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR004806--Rad23
IPR006636--STI1_HS-bd
IPR015940--UBA
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR015360--XPC-bd

PROSITE

PS50030--UBA
PS50053--UBIQUITIN_2

Pfam

PF00627--UBA
PF00240--ubiquitin
PF09280--XPC-binding

PRINTS

PR01839--RAD23PROTEIN

SMART

SM00727--STI1
SM00165--UBA
SM00213--UBQ

Gene Ontology

GO:0005829--C:cytosol
GO:0005635--C:nuclear envelope
GO:0003684--F:damaged DNA binding
GO:0042177--P:negative regulation of protein catabolic process
GO:0006289--P:nucleotide-excision repair
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0016567--P:protein ubiquitination

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000088	Aegilops tauschii	46.53	2.00e-17	82.00
IUUC-Aml-001515	Ailuropoda melanoleuca	43.43	2.00e-14	71.20
IUUC-Atr-002756	Amborella trichopoda	45.54	4.00e-17	80.50
IUUC-Apl-003371	Anas platyrhynchos	44.00	2.00e-14	72.00
IUUC-Aca-004704	Anolis carolinensis	49.21	1.00e-11	62.40
IUUC-Aly-005486	Arabidopsis lyrata	46.94	6.00e-18	83.20
IUUC-Ath-006688	Arabidopsis thaliana	46.94	8.00e-18	82.80
IUUC-Ago-007830	Ashbya gossypii	30.27	3.00e-21	94.40
IUUC-Acl-008212	Aspergillus clavatus	77.27	2.00e-33	134.00
IUUC-Afl-008605	Aspergillus flavus	75.00	2.00e-31	128.00
IUUC-Afu-008877	Aspergillus fumigatus	44.03	6.00e-37	146.00
IUUC-Ani-009460	Aspergillus nidulans	75.00	9.00e-32	129.00
IUUC-Aor-010032	Aspergillus oryzae	43.32	8.00e-35	139.00
IUUC-Ate-010458	Aspergillus terreus	56.60	1.00e-45	175.00
IUUC-Ame-011107	Astyanax mexicanus	46.51	2.00e-15	74.70
IUUC-Bgr-012056	Blumeria graminis	47.87	2.00e-40	157.00
IUUC-Bta-012377	Bos taurus	45.05	9.00e-15	72.80
IUUC-Bci-013933	Botrytis cinerea	50.80	6.00e-43	166.00
IUUC-Bdi-014355	Brachypodium distachyon	46.08	4.00e-17	80.50
IUUC-Bol-016300	Brassica oleracea	46.94	4.00e-18	84.00
IUUC-Bra-016769	Brassica rapa	46.94	7.00e-18	83.20
IUUC-Cel-018364	Caenorhabditis elegans	53.49	6.00e-10	56.60
IUUC-Cja-018946	Callithrix jacchus	43.43	3.00e-14	70.90
IUUC-Cfa-020577	Canis familiaris	43.43	1.00e-14	72.00
IUUC-Cpo-022145	Cavia porcellus	52.05	2.00e-16	78.20
IUUC-Cre-022810	Chlamydomonas reinhardtii	41.58	9.00e-12	62.80
IUUC-Csa-023183	Chlorocebus sabaeus	43.43	2.00e-14	72.00
IUUC-Cho-024814	Choloepus hoffmanni	42.86	4.00e-14	70.50
IUUC-Cin-025741	Ciona intestinalis	43.84	2.00e-11	61.20
IUUC-Csv-025823	Ciona savignyi	34.90	1.00e-23	101.00
IUUC-Cne-027056	Cryptococcus neoformans	45.83	4.00e-14	70.50
IUUC-Dre-028369	Danio rerio	50.00	2.00e-15	75.10
IUUC-Dno-029543	Dasypus novemcinctus	52.05	2.00e-16	78.20
IUUC-Dor-030358	Dipodomys ordii	43.43	2.00e-14	71.20
IUUC-Dse-031336	Dothistroma septosporum	80.00	5.00e-38	149.00
IUUC-Dme-032027	Drosophila melanogaster	45.21	2.00e-13	68.20
IUUC-Ete-032583	Echinops telfairi	42.86	9.00e-14	69.30
IUUC-Eca-034243	Equus caballus	42.86	8.00e-14	69.70
IUUC-Fca-036051	Felis catus	43.43	1.00e-14	72.40
IUUC-Fal-037148	Ficedula albicollis	43.00	6.00e-14	70.10
IUUC-Fox-037960	Fusarium oxysporum	60.32	8.00e-51	192.00
IUUC-Fso-038107	Fusarium solani	64.02	3.00e-55	207.00
IUUC-Gmo-038528	Gadus morhua	45.71	1.00e-17	82.00
IUUC-Ggr-040116	Gaeumannomyces graminis	91.11	2.00e-42	164.00
IUUC-Gga-040133	Gallus gallus	60.42	5.00e-11	60.10
IUUC-Gac-042298	Gasterosteus aculeatus	31.52	9.00e-17	79.30
IUUC-Gma-044077	Glycine max	30.32	3.00e-16	77.40
IUUC-Ggo-045084	Gorilla gorilla	46.67	2.00e-14	71.60
IUUC-Hsa-046614	Homo sapiens	43.43	2.00e-14	72.00
IUUC-Hvu-047832	Hordeum vulgare	45.10	4.00e-16	77.00
IUUC-Itr-048295	Ictidomys tridecemlineatus	52.00	9.00e-17	79.30
IUUC-Kpa-049314	Komagataella pastoris	35.33	1.00e-25	108.00
IUUC-Lch-049719	Latimeria chalumnae	49.41	9.00e-16	75.90
IUUC-Lpe-051168	Leersia perrieri	46.08	1.00e-17	82.00
IUUC-Loc-051758	Lepisosteus oculatus	34.83	3.00e-19	87.40
IUUC-Lma-053328	Leptosphaeria maculans	65.28	5.00e-23	96.70
IUUC-Laf-054589	Loxodonta africana	43.43	2.00e-14	72.00
IUUC-Mcc-055860	Macaca mulatta	43.43	2.00e-14	72.00
IUUC-Meu-056459	Macropus eugenii	46.15	1.00e-14	72.00
IUUC-Mor-057287	Magnaporthe oryzae	61.05	2.00e-53	201.00
IUUC-Mpo-057609	Magnaporthe poae	91.11	7.00e-43	165.00
IUUC-Mtr-058239	Medicago truncatula	31.22	1.00e-16	78.60
IUUC-Mla-058961	Melampsora laricipopulina	42.31	4.00e-15	73.90
IUUC-Mvi-060220	Microbotryum violaceum	44.29	2.00e-13	68.60
IUUC-Mmr-060819	Microcebus murinus	46.67	1.00e-14	72.00
IUUC-Mdo-061967	Monodelphis domestica	51.35	2.00e-16	78.60
IUUC-Mmu-063258	Mus musculus	52.00	6.00e-17	80.10
IUUC-Mac-064724	Musa acuminata	46.88	2.00e-17	81.60
IUUC-Mpu-066684	Mustela putorius furo	43.43	1.00e-14	72.00
IUUC-Mlu-067787	Myotis lucifugus	46.67	2.00e-14	72.00
IUUC-Nfi-068390	Neosartorya fischeri	77.27	4.00e-33	133.00
IUUC-Ncr-068685	Neurospora crassa	52.19	3.00e-35	140.00
IUUC-Nle-069846	Nomascus leucogenys	46.67	2.00e-14	71.60
IUUC-Opr-070234	Ochotona princeps	52.83	3.00e-09	54.30
IUUC-Ont-072484	Oreochromis niloticus	45.33	6.00e-14	70.10
IUUC-Oan-073572	Ornithorhynchus anatinus	48.00	4.00e-15	73.60
IUUC-Oba-074972	Oryza barthii	46.08	1.00e-17	82.00
IUUC-Obr-076909	Oryza brachyantha	46.08	1.00e-17	82.00
IUUC-Ogl-077067	Oryza glaberrima	46.08	1.00e-17	82.40
IUUC-Ogu-078023	Oryza glumaepatula	34.20	7.00e-17	79.70
IUUC-Oin-079203	Oryza indica	46.08	1.00e-17	82.00
IUUC-Olo-080559	Oryza longistaminata	46.08	1.00e-17	82.00
IUUC-Ome-081652	Oryza meridionalis	44.79	2.00e-16	78.20
IUUC-Oni-082812	Oryza nivara	46.08	1.00e-17	82.00
IUUC-Opu-083963	Oryza punctata	46.08	1.00e-17	82.40
IUUC-Oru-084942	Oryza rufipogon	46.08	2.00e-17	81.60
IUUC-Osa-085951	Oryza sativa	46.08	1.00e-17	82.00
IUUC-Ola-086474	Oryzias latipes	49.15	3.00e-11	60.80
IUUC-Olu-087843	Ostreococcus lucimarinus	41.12	2.00e-14	71.20
IUUC-Oga-088023	Otolemur garnettii	52.00	8.00e-17	79.70
IUUC-Oar-090387	Ovis aries	45.05	1.00e-14	72.40
IUUC-Ptr-090912	Pan troglodytes	43.43	2.00e-14	71.60
IUUC-Pan-092140	Papio anubis	46.67	2.00e-14	71.60
IUUC-Psi-093477	Pelodiscus sinensis	43.62	2.00e-12	65.50
IUUC-Pno-095064	Phaeosphaeria nodorum	46.49	3.00e-30	124.00
IUUC-Ppa-095654	Physcomitrella patens	47.42	1.00e-15	75.50
IUUC-Pfo-096607	Poecilia formosa	43.01	5.00e-13	67.00
IUUC-Pab-097738	Pongo abelii	43.43	2.00e-14	71.60
IUUC-Pop-099416	Populus trichocarpa	46.46	6.00e-18	82.80
IUUC-Pca-100348	Procavia capensis	43.43	1.00e-14	72.00
IUUC-Ppe-101830	Prunus persica	47.52	1.00e-17	82.00
IUUC-Pva-102412	Pteropus vampyrus	43.43	1.00e-14	72.00
IUUC-Pgr-103641	Puccinia graminis	47.89	2.00e-16	78.20
IUUC-Ptt-103717	Puccinia triticina	49.04	5.00e-21	93.60
IUUC-Pte-104303	Pyrenophora teres	82.22	1.00e-39	155.00
IUUC-Pyt-104580	Pyrenophora triticirepentis	82.22	2.00e-39	154.00
IUUC-Rno-104844	Rattus norvegicus	52.00	6.00e-17	80.10
IUUC-Sce-106214	Saccharomyces cerevisiae	38.14	5.00e-13	67.00
IUUC-Sha-106918	Sarcophilus harrisii	46.15	2.00e-14	72.00
IUUC-Sja-107851	Schizosaccharomyces japonicus	64.44	8.00e-28	115.00
IUUC-Spo-108298	Schizosaccharomyces pombe	51.39	3.00e-16	77.40
IUUC-Ssl-108382	Sclerotinia sclerotiorum	82.22	4.00e-39	153.00
IUUC-Smo-109518	Selaginella moellendorffii	50.56	2.00e-16	77.80
IUUC-Sit-109813	Setaria italica	45.10	2.00e-16	78.60
IUUC-Sly-111480	Solanum lycopersicum	53.68	6.00e-20	89.70
IUUC-Stu-112054	Solanum tuberosum	52.63	2.00e-19	88.20
IUUC-Sar-112925	Sorex araneus	42.86	8.00e-14	69.70
IUUC-Sbi-114459	Sorghum bicolor	46.08	2.00e-17	81.60
IUUC-Sre-114894	Sporisorium reilianum	50.70	1.00e-13	69.30
IUUC-Ssc-115460	Sus scrofa	46.67	2.00e-14	71.60
IUUC-Tgu-116918	Taeniopygia guttata	48.00	4.00e-16	77.00
IUUC-Tru-118651	Takifugu rubripes	38.89	2.00e-13	68.20
IUUC-Tsy-119385	Tarsius syrichta	46.67	2.00e-14	70.50
IUUC-Tni-120493	Tetraodon nigroviridis	38.22	1.00e-22	99.00
IUUC-Tca-121617	Theobroma cacao	47.37	1.00e-17	82.40
IUUC-Tre-121911	Trichoderma reesei	58.68	7.00e-78	282.00
IUUC-Tvi-122617	Trichoderma virens	71.62	1.00e-62	231.00
IUUC-Tae-125346	Triticum aestivum	47.06	5.00e-18	83.60
IUUC-Tur-126610	Triticum urartu	45.10	8.00e-16	77.00
IUUC-Tme-127092	Tuber melanosporum	46.39	4.00e-40	156.00
IUUC-Tbe-127603	Tupaia belangeri	42.45	6.00e-15	73.20
IUUC-Ttr-129232	Tursiops truncatus	43.43	1.00e-14	72.00
IUUC-Uma-129484	Ustilago maydis	52.11	2.00e-14	71.60
IUUC-Vda-129946	Verticillium dahliae	67.03	3.00e-57	213.00
IUUC-Vpa-130357	Vicugna pacos	49.09	3.00e-10	57.80
IUUC-Vvi-131039	Vitis vinifera	44.44	5.00e-17	80.10
IUUC-Xtr-132679	Xenopus tropicalis	49.33	8.00e-15	73.20
IUUC-Xma-133647	Xiphophorus maculatus	43.01	4.00e-13	67.00
IUUC-Yli-134615	Yarrowia lipolytica	56.04	5.00e-17	80.10
IUUC-Zma-135929	Zea mays	45.10	4.00e-17	80.50

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence