iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSRNOG00000005261.7	ENSRNOT00000078326.1	ENSRNOP00000068659.1
ENSRNOG00000005261.7	ENSRNOT00000064636.2	ENSRNOP00000062042.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC	RAID2
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 adaptor/Cullin RING/SCF/F-box	93.92	0.00e+00	1285.00	IUUC-Hsa-047001

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MAPFPDEVDV FTAPHWRMKQ LVGRYCDKLS KTNFSNNNDF RALLQSLYAT FKEFKMHEQI 60
ENEYIIGLLQ QRSQTIYNVH SDNKLSEMLS LFEKGLKNVK NECEQLNYAK QLKERLEAFT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACGGCGGCGC TGCCAGCGGT GCTGAGGCAG GGCGATGGCG CCCTTCCCCG ATGAAGTGGA 60
CGTCTTCACC GCCCCACACT GGCGGATGAA GCAGCTGGTG GGGCGCTACT GCGACAAGGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR001810--F-box_dom
IPR012312--Haemerythrin-like
IPR032675--L_dom-like
IPR001611--Leu-rich_rpt
IPR006553--Leu-rich_rpt_Cys-con_subtyp

PROSITE

PS50181--FBOX

Pfam

PF12937--F-box-like
PF01814--Hemerythrin
PF13516--LRR_6

SMART

SM00256--FBOX
SM00367--LRR_CC

Gene Ontology

GO:0048471--C:perinuclear region of cytoplasm
GO:0019005--C:SCF ubiquitin ligase complex
GO:0005506--F:iron ion binding
GO:0055072--P:iron ion homeostasis
GO:1903364--P:positive regulation of cellular protein catabolic process
GO:0016567--P:protein ubiquitination
GO:0031146--P:SCF-dependent proteasomal ubiquitin-dependent protein catabolic process

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002319	Ailuropoda melanoleuca	93.72	0.00e+00	1180.00
IUUC-Apl-003755	Anas platyrhynchos	79.22	0.00e+00	995.00
IUUC-Aca-004798	Anolis carolinensis	76.05	0.00e+00	1033.00
IUUC-Ame-011091	Astyanax mexicanus	60.14	0.00e+00	780.00
IUUC-Bta-013204	Bos taurus	92.04	0.00e+00	1187.00
IUUC-Cja-019594	Callithrix jacchus	92.57	0.00e+00	1018.00
IUUC-Cfa-020965	Canis familiaris	94.07	0.00e+00	1231.00
IUUC-Cpo-021308	Cavia porcellus	93.34	0.00e+00	1244.00
IUUC-Csa-023865	Chlorocebus sabaeus	93.49	0.00e+00	1289.00
IUUC-Cho-024778	Choloepus hoffmanni	82.08	2.00e-162	565.00
IUUC-Dre-027628	Danio rerio	55.13	2.00e-178	619.00
IUUC-Dno-029899	Dasypus novemcinctus	91.55	0.00e+00	1258.00
IUUC-Dor-031105	Dipodomys ordii	80.68	0.00e+00	1064.00
IUUC-Ete-032314	Echinops telfairi	86.43	0.00e+00	1070.00
IUUC-Eca-033797	Equus caballus	92.77	0.00e+00	1131.00
IUUC-Eeu-034811	Erinaceus europaeus	83.63	0.00e+00	875.00
IUUC-Fca-036516	Felis catus	92.92	0.00e+00	1169.00
IUUC-Fal-036824	Ficedula albicollis	77.39	0.00e+00	932.00
IUUC-Gga-040271	Gallus gallus	79.77	0.00e+00	1061.00
IUUC-Gac-041399	Gasterosteus aculeatus	63.16	0.00e+00	806.00
IUUC-Ggo-044415	Gorilla gorilla	93.63	0.00e+00	1292.00
IUUC-Hsa-047001	Homo sapiens	93.92	0.00e+00	1312.00
IUUC-Itr-048356	Ictidomys tridecemlineatus	93.07	0.00e+00	1049.00
IUUC-Lch-049897	Latimeria chalumnae	65.76	0.00e+00	836.00
IUUC-Loc-052162	Lepisosteus oculatus	66.47	0.00e+00	863.00
IUUC-Laf-054031	Loxodonta africana	92.62	0.00e+00	1242.00
IUUC-Mcc-054680	Macaca mulatta	93.49	0.00e+00	1289.00
IUUC-Meu-056199	Macropus eugenii	81.97	1.00e-105	377.00
IUUC-Mga-059675	Meleagris gallopavo	79.70	0.00e+00	1020.00
IUUC-Mmr-061694	Microcebus murinus	93.63	0.00e+00	1285.00
IUUC-Mdo-062900	Monodelphis domestica	88.13	0.00e+00	1204.00
IUUC-Mmu-063178	Mus musculus	96.96	0.00e+00	1328.00
IUUC-Mpu-066584	Mustela putorius furo	94.06	0.00e+00	1243.00
IUUC-Mlu-067859	Myotis lucifugus	92.91	0.00e+00	1175.00
IUUC-Nle-069172	Nomascus leucogenys	94.07	0.00e+00	1267.00
IUUC-Opr-070992	Ochotona princeps	89.78	0.00e+00	1009.00
IUUC-Ont-072577	Oreochromis niloticus	62.29	0.00e+00	806.00
IUUC-Oan-072870	Ornithorhynchus anatinus	83.63	0.00e+00	893.00
IUUC-Ocu-074849	Oryctolagus cuniculus	91.17	0.00e+00	1236.00
IUUC-Ola-087146	Oryzias latipes	61.35	0.00e+00	798.00
IUUC-Oga-088307	Otolemur garnettii	93.69	0.00e+00	1218.00
IUUC-Oar-090192	Ovis aries	89.60	0.00e+00	1192.00
IUUC-Ptr-091049	Pan troglodytes	93.92	0.00e+00	1295.00
IUUC-Pan-091995	Papio anubis	93.63	0.00e+00	1292.00
IUUC-Psi-093154	Pelodiscus sinensis	79.12	0.00e+00	982.00
IUUC-Pma-094334	Petromyzon marinus	47.21	4.00e-139	488.00
IUUC-Pfo-096154	Poecilia formosa	62.06	0.00e+00	782.00
IUUC-Pab-098264	Pongo abelii	93.83	0.00e+00	1237.00
IUUC-Pca-100884	Procavia capensis	77.88	0.00e+00	642.00
IUUC-Pva-102114	Pteropus vampyrus	92.77	0.00e+00	1259.00
IUUC-Sha-106508	Sarcophilus harrisii	85.63	0.00e+00	1156.00
IUUC-Sar-113107	Sorex araneus	88.17	0.00e+00	823.00
IUUC-Ssc-115489	Sus scrofa	93.34	0.00e+00	1218.00
IUUC-Tgu-116734	Taeniopygia guttata	78.18	0.00e+00	1014.00
IUUC-Tru-117632	Takifugu rubripes	62.04	0.00e+00	794.00
IUUC-Tsy-119400	Tarsius syrichta	92.16	0.00e+00	1197.00
IUUC-Tni-120602	Tetraodon nigroviridis	61.33	0.00e+00	806.00
IUUC-Tbe-127833	Tupaia belangeri	92.15	0.00e+00	637.00
IUUC-Ttr-129289	Tursiops truncatus	91.49	0.00e+00	725.00
IUUC-Vpa-130253	Vicugna pacos	95.30	0.00e+00	637.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence