iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSONIG00000006992.1	ENSONIT00000008821.1	ENSONIP00000008816.1
ENSONIG00000006992.1	ENSONIT00000008822.1	ENSONIP00000008817.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	2.20e-16	60.2	447	490

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 2    kvClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkC 51
           ++C vC++gge    l++C+ C + +H +Cl+++  +e pn e wiCp+C
   Q: 447  EFCRVCKDGGE----LLCCDSCPSSYHIHCLNPP-LPEIPNGE-WICPRC 490
           58*********....*******************.*******8.****** PP

Organism

Oreochromis niloticus

Protein Sequence
(Fasta)

MSGSDDERDE YGAPEDRLMH DDEEEEISEN ETPKVRKKKK AKKSRESKGS KRRSRREELP 60
ISSPEPMDLG GVDDGEDGGP GQRSESEGSD YTPGRKKKKR ASSGKDKKRN SAAAERSASK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TGTGTGTGGA TTGACTATTA TGGTCTGTAC GTTGCAAGGT AACTATGCAG AGTGGGGGAG 60
GGGTCAATGA AGTGTGTGTG TGTGTGTGTG TGTATGTGTG GTAGTGGTGG TGGAGGGGGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR028725--CHD4
IPR012957--CHD_C2
IPR012958--CHD_N
IPR000953--Chromo/chromo_shadow_dom
IPR023780--Chromo_domain
IPR016197--Chromodomain-like
IPR002464--DNA/RNA_helicase_DEAH_CS
IPR009462--DUF1086
IPR009463--DUF1087
IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR009071--HMG_box_dom
IPR027417--P-loop_NTPase
IPR000330--SNF2_N
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50013--CHROMO_2
PS00690--DEAH_ATP_HELICASE
PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF08074--CHDCT2
PF08073--CHDNT
PF00385--Chromo
PF06461--DUF1086
PF06465--DUF1087
PF00271--Helicase_C
PF00628--PHD
PF00176--SNF2_N

SMART

SM00298--CHROMO
SM00487--DEXDc
SM01146--DUF1086
SM01147--DUF1087
SM00490--HELICc
SM00249--PHD

Gene Ontology

GO:0016581--C:NuRD complex
GO:0005524--F:ATP binding
GO:0008026--F:ATP-dependent helicase activity
GO:0003677--F:DNA binding
GO:0008270--F:zinc ion binding
GO:0006325--P:chromatin organization
GO:0031101--P:fin regeneration
GO:0006355--P:regulation of transcription, DNA-templated
GO:0051225--P:spindle assembly

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005645	Arabidopsis lyrata	39.24	4.00e-154	540.00
IUUC-Ath-007406	Arabidopsis thaliana	40.05	5.00e-159	556.00
IUUC-Ame-011098	Astyanax mexicanus	86.26	0.00e+00	2546.00
IUUC-Bta-013220	Bos taurus	80.58	0.00e+00	2084.00
IUUC-Cel-018108	Caenorhabditis elegans	57.42	0.00e+00	1338.00
IUUC-Cfa-020422	Canis familiaris	80.56	0.00e+00	2090.00
IUUC-Cpo-021704	Cavia porcellus	80.54	0.00e+00	2094.00
IUUC-Csa-023625	Chlorocebus sabaeus	80.83	0.00e+00	2095.00
IUUC-Cho-024361	Choloepus hoffmanni	81.21	0.00e+00	1345.00
IUUC-Dre-027505	Danio rerio	83.40	0.00e+00	2619.00
IUUC-Dno-029656	Dasypus novemcinctus	80.69	0.00e+00	2090.00
IUUC-Dme-032150	Drosophila melanogaster	62.52	0.00e+00	1436.00
IUUC-Eca-034112	Equus caballus	80.56	0.00e+00	2088.00
IUUC-Fca-036056	Felis catus	80.56	0.00e+00	2088.00
IUUC-Fal-037312	Ficedula albicollis	83.03	0.00e+00	2108.00
IUUC-Gga-040216	Gallus gallus	77.53	0.00e+00	2521.00
IUUC-Gac-042478	Gasterosteus aculeatus	82.62	0.00e+00	2264.00
IUUC-Gma-043999	Glycine max	43.38	0.00e+00	754.00
IUUC-Hsa-045908	Homo sapiens	78.77	0.00e+00	2103.00
IUUC-Itr-048002	Ictidomys tridecemlineatus	80.56	0.00e+00	2088.00
IUUC-Lch-049948	Latimeria chalumnae	72.51	0.00e+00	1815.00
IUUC-Loc-052144	Lepisosteus oculatus	85.57	0.00e+00	2162.00
IUUC-Mcc-055773	Macaca mulatta	79.51	0.00e+00	2095.00
IUUC-Mga-059633	Meleagris gallopavo	77.61	0.00e+00	2490.00
IUUC-Mmr-060886	Microcebus murinus	78.50	0.00e+00	2095.00
IUUC-Mdo-062872	Monodelphis domestica	83.97	0.00e+00	1910.00
IUUC-Mmu-063672	Mus musculus	85.90	0.00e+00	1961.00
IUUC-Mpu-066692	Mustela putorius furo	80.56	0.00e+00	2088.00
IUUC-Mlu-067785	Myotis lucifugus	80.42	0.00e+00	2082.00
IUUC-Nle-070039	Nomascus leucogenys	78.45	0.00e+00	2080.00
IUUC-Oan-072885	Ornithorhynchus anatinus	59.11	0.00e+00	1467.00
IUUC-Ocu-074177	Oryctolagus cuniculus	79.81	0.00e+00	2102.00
IUUC-Ola-086880	Oryzias latipes	89.05	0.00e+00	2488.00
IUUC-Oga-088970	Otolemur garnettii	79.24	0.00e+00	2088.00
IUUC-Oar-090422	Ovis aries	80.58	0.00e+00	2085.00
IUUC-Pan-092441	Papio anubis	80.83	0.00e+00	2096.00
IUUC-Psi-093530	Pelodiscus sinensis	85.58	0.00e+00	2003.00
IUUC-Ppa-095213	Physcomitrella patens	41.89	0.00e+00	719.00
IUUC-Pfo-097530	Poecilia formosa	92.33	0.00e+00	2427.00
IUUC-Pab-097959	Pongo abelii	78.43	0.00e+00	2045.00
IUUC-Pva-103186	Pteropus vampyrus	79.07	0.00e+00	2073.00
IUUC-Rno-105692	Rattus norvegicus	85.90	0.00e+00	1962.00
IUUC-Sly-110976	Solanum lycopersicum	43.60	0.00e+00	749.00
IUUC-Ssc-115295	Sus scrofa	80.56	0.00e+00	2087.00
IUUC-Tgu-117484	Taeniopygia guttata	76.91	0.00e+00	2512.00
IUUC-Tsy-119261	Tarsius syrichta	78.51	0.00e+00	1450.00
IUUC-Ttr-128478	Tursiops truncatus	77.09	0.00e+00	2058.00
IUUC-Vvi-130849	Vitis vinifera	43.72	0.00e+00	735.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence