iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099467

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000351

Gene Name

POPTRDRAFT_902475; POPTR_0015s08250g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0015s08250	POPTR_0015s08250.1	POPTR_0015s08250.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	3.00e-18	66.7	29	100

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedl.vPnltlrrliqawceens 73
           +p+ef+CpIs+ lM dPvv++sG+t++r s++ + + g    ++ + +l + +  +Pnl+++ +iq+wc++++
   Q: 29   PPKEFICPISGSLMFDPVVVSSGQTFERLSVQVCHDLGFI-PTLQDNSLPDFTNvIPNLAIKTTIQNWCDSSG 100
           79*************************************9.77888888666555**************9876 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MGGNGKRRWK ISFYSRSKPT QTQHQQQQPP KEFICPISGS LMFDPVVVSS GQTFERLSVQ 60
VCHDLGFIPT LQDNSLPDFT NVIPNLAIKT TIQNWCDSSG TQHPPAPDYS SLEEIIREKM 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTCTCTAAGC CCCTGCTGCT TTTACGCGGT AGAGTAGAAA TAGACGACGG GCTCAGTCTC 60
TTCAAGCCAA ACACCAGTTC TCCTCCATGC ACTGAATCCT AACCCTAATC CTAATCCCAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity

KEGG

pop:POPTR_0015s08250g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-003157	Amborella trichopoda	46.00	1.00e-80	293.00
IUUC-Aly-005887	Arabidopsis lyrata	59.09	5.00e-163	566.00
IUUC-Ath-007165	Arabidopsis thaliana	59.68	3.00e-163	567.00
IUUC-Bta-013555	Bos taurus	28.51	1.00e-07	52.40
IUUC-Bol-015998	Brassica oleracea	57.73	2.00e-139	488.00
IUUC-Bra-017987	Brassica rapa	60.43	9.00e-140	489.00
IUUC-Fca-035957	Felis catus	30.23	8.00e-11	62.40
IUUC-Gma-043462	Glycine max	64.77	0.00e+00	626.00
IUUC-Ggo-045030	Gorilla gorilla	28.51	1.00e-07	52.00
IUUC-Mtr-057660	Medicago truncatula	64.17	4.00e-164	570.00
IUUC-Mmr-061778	Microcebus murinus	28.06	1.00e-08	53.10
IUUC-Mac-064560	Musa acuminata	45.55	2.00e-53	202.00
IUUC-Mlu-067208	Myotis lucifugus	28.51	1.00e-07	52.00
IUUC-Ogu-078087	Oryza glumaepatula	41.13	5.00e-38	151.00
IUUC-Oin-079818	Oryza indica	37.84	4.00e-35	141.00
IUUC-Osa-085410	Oryza sativa	41.13	2.00e-38	152.00
IUUC-Oga-088587	Otolemur garnettii	28.51	4.00e-08	53.50
IUUC-Ppa-095595	Physcomitrella patens	41.79	1.00e-48	187.00
IUUC-Ppe-101245	Prunus persica	63.37	3.00e-170	590.00
IUUC-Sly-111894	Solanum lycopersicum	55.14	1.00e-117	416.00
IUUC-Stu-112202	Solanum tuberosum	55.74	2.00e-133	468.00
IUUC-Sar-113307	Sorex araneus	38.38	3.00e-07	50.10
IUUC-Tca-121713	Theobroma cacao	66.79	0.00e+00	641.00
IUUC-Vpa-130794	Vicugna pacos	27.75	2.00e-07	51.60
IUUC-Vvi-131166	Vitis vinifera	65.13	7.00e-166	576.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence