iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sha-107233

Ensembl Protein ID

ENSSHAP00000016947.1

UniProt Accession

G3WNE2; G3WNE2_SARHA

Genbank Protein ID

ENSSHAP00000016947

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

AEFK01165149

Gene Name

CHD3

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSSHAG00000014412.1	ENSSHAT00000017089.1	ENSSHAP00000016947.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	5.90e-16	58.6	334	379

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 2    kvClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCrs 53
           ++C vC++gge    ++ C+ C +++H  Cl ++  +  p+ + w Cp C++
   Q: 334  DYCEVCQQGGE----IILCDTCPRAYHLVCLDPE-LDRAPEGK-WSCPHCEK 379
           79*********....9******************.*******7.******86 PP

Organism

Sarcophilus harrisii

Protein Sequence
(Fasta)

SALGVKKRKR GPRKQKENKP GKPRKRKKLD SEEEFGSERD DYREKSESGG SEYGTGPGRK 60
RRRKHREKKE KKTKRRKKGE GDGCQKQVEQ KSSAMLLLTW GLEDVEHVFS EEDYHTLTNY 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAAGATGA AATTGGACTC CCACCTTCAG CTCTTGGAGT GAAGAAGAGA AAACGAGGAC 60
CCAGGAAACA GAAGGAGAAC AAGCCAGGGA AACCACGTAA AAGAAAGAAG CTTGTGAGTA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR028722--CHD3
IPR012957--CHD_C2
IPR012958--CHD_N
IPR000953--Chromo/chromo_shadow_dom
IPR023780--Chromo_domain
IPR016197--Chromodomain-like
IPR002464--DNA/RNA_helicase_DEAH_CS
IPR009462--DUF1086
IPR009463--DUF1087
IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR009071--HMG_box_dom
IPR027417--P-loop_NTPase
IPR000330--SNF2_N
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50013--CHROMO_2
PS00690--DEAH_ATP_HELICASE
PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF08074--CHDCT2
PF08073--CHDNT
PF00385--Chromo
PF06461--DUF1086
PF06465--DUF1087
PF00271--Helicase_C
PF00628--PHD
PF00176--SNF2_N

SMART

SM00298--CHROMO
SM00487--DEXDc
SM01146--DUF1086
SM01147--DUF1087
SM00490--HELICc
SM00249--PHD

Gene Ontology

GO:0005813--C:centrosome
GO:0005737--C:cytoplasm
GO:0005730--C:nucleolus
GO:0016581--C:NuRD complex
GO:0005524--F:ATP binding
GO:0008026--F:ATP-dependent helicase activity
GO:0003677--F:DNA binding
GO:0003723--F:RNA binding
GO:0008270--F:zinc ion binding
GO:0051297--P:centrosome organization
GO:0006333--P:chromatin assembly or disassembly
GO:0006355--P:regulation of transcription, DNA-templated
GO:0007051--P:spindle organization

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001361	Ailuropoda melanoleuca	72.23	0.00e+00	2149.00
IUUC-Apl-004175	Anas platyrhynchos	80.74	0.00e+00	1815.00
IUUC-Aca-004560	Anolis carolinensis	80.05	0.00e+00	2691.00
IUUC-Ath-007406	Arabidopsis thaliana	40.47	3.00e-155	543.00
IUUC-Ame-011352	Astyanax mexicanus	79.57	0.00e+00	2077.00
IUUC-Bta-012868	Bos taurus	91.24	0.00e+00	3036.00
IUUC-Cel-018108	Caenorhabditis elegans	57.72	0.00e+00	1306.00
IUUC-Cja-019018	Callithrix jacchus	86.43	0.00e+00	2910.00
IUUC-Cfa-021055	Canis familiaris	91.28	0.00e+00	3010.00
IUUC-Cpo-021523	Cavia porcellus	91.79	0.00e+00	3081.00
IUUC-Csa-024136	Chlorocebus sabaeus	91.82	0.00e+00	2969.00
IUUC-Cho-024361	Choloepus hoffmanni	75.48	0.00e+00	1230.00
IUUC-Csv-025847	Ciona savignyi	54.30	0.00e+00	1411.00
IUUC-Dre-028043	Danio rerio	79.18	0.00e+00	2045.00
IUUC-Dno-029656	Dasypus novemcinctus	80.51	0.00e+00	1798.00
IUUC-Dor-030167	Dipodomys ordii	93.60	0.00e+00	2482.00
IUUC-Dme-032150	Drosophila melanogaster	61.88	0.00e+00	1406.00
IUUC-Ete-032757	Echinops telfairi	85.88	0.00e+00	2723.00
IUUC-Eca-034112	Equus caballus	80.51	0.00e+00	1797.00
IUUC-Eeu-034777	Erinaceus europaeus	84.96	0.00e+00	2529.00
IUUC-Fca-036043	Felis catus	91.63	0.00e+00	3018.00
IUUC-Gmo-038957	Gadus morhua	79.90	0.00e+00	1457.00
IUUC-Gga-040216	Gallus gallus	72.84	0.00e+00	2170.00
IUUC-Gac-041375	Gasterosteus aculeatus	70.47	0.00e+00	2565.00
IUUC-Gma-043999	Glycine max	43.96	0.00e+00	744.00
IUUC-Ggo-045538	Gorilla gorilla	91.73	0.00e+00	2971.00
IUUC-Hsa-045916	Homo sapiens	91.82	0.00e+00	2962.00
IUUC-Itr-048463	Ictidomys tridecemlineatus	91.87	0.00e+00	2942.00
IUUC-Lch-050343	Latimeria chalumnae	75.47	0.00e+00	2511.00
IUUC-Loc-052383	Lepisosteus oculatus	81.30	0.00e+00	2079.00
IUUC-Laf-053870	Loxodonta africana	93.84	0.00e+00	2708.00
IUUC-Mcc-055499	Macaca mulatta	85.81	0.00e+00	2848.00
IUUC-Meu-056292	Macropus eugenii	94.41	0.00e+00	1301.00
IUUC-Mga-059633	Meleagris gallopavo	73.11	0.00e+00	2170.00
IUUC-Mmr-061223	Microcebus murinus	90.99	0.00e+00	2977.00
IUUC-Mdo-062971	Monodelphis domestica	98.27	0.00e+00	2997.00
IUUC-Mmu-063920	Mus musculus	90.58	0.00e+00	2957.00
IUUC-Mpu-065809	Mustela putorius furo	91.11	0.00e+00	2772.00
IUUC-Mlu-067355	Myotis lucifugus	91.90	0.00e+00	3064.00
IUUC-Nle-069842	Nomascus leucogenys	91.25	0.00e+00	2875.00
IUUC-Opr-070960	Ochotona princeps	91.29	0.00e+00	2930.00
IUUC-Ont-072647	Oreochromis niloticus	68.99	0.00e+00	2343.00
IUUC-Oan-072885	Ornithorhynchus anatinus	62.71	0.00e+00	1539.00
IUUC-Ocu-074438	Oryctolagus cuniculus	86.99	0.00e+00	2860.00
IUUC-Ola-086961	Oryzias latipes	70.52	0.00e+00	2176.00
IUUC-Oga-088374	Otolemur garnettii	91.78	0.00e+00	2997.00
IUUC-Oar-089784	Ovis aries	89.76	0.00e+00	2977.00
IUUC-Ptr-090799	Pan troglodytes	91.87	0.00e+00	2972.00
IUUC-Pan-092441	Papio anubis	80.77	0.00e+00	1803.00
IUUC-Psi-093530	Pelodiscus sinensis	80.29	0.00e+00	1826.00
IUUC-Ppa-095213	Physcomitrella patens	41.27	0.00e+00	708.00
IUUC-Pfo-096802	Poecilia formosa	73.57	0.00e+00	1974.00
IUUC-Pab-098174	Pongo abelii	88.97	0.00e+00	2843.00
IUUC-Pca-100829	Procavia capensis	91.63	0.00e+00	2215.00
IUUC-Pva-103186	Pteropus vampyrus	78.38	0.00e+00	1786.00
IUUC-Rno-104884	Rattus norvegicus	90.20	0.00e+00	2843.00
IUUC-Sly-110976	Solanum lycopersicum	43.89	0.00e+00	738.00
IUUC-Ssc-115751	Sus scrofa	91.40	0.00e+00	3003.00
IUUC-Tgu-117484	Taeniopygia guttata	72.15	0.00e+00	2157.00
IUUC-Tru-117597	Takifugu rubripes	72.38	0.00e+00	2202.00
IUUC-Tsy-119261	Tarsius syrichta	73.68	0.00e+00	1329.00
IUUC-Tni-120039	Tetraodon nigroviridis	75.75	0.00e+00	2086.00
IUUC-Tbe-128117	Tupaia belangeri	90.72	0.00e+00	1303.00
IUUC-Vpa-130209	Vicugna pacos	82.30	0.00e+00	632.00
IUUC-Vvi-130849	Vitis vinifera	43.52	0.00e+00	741.00
IUUC-Xtr-132833	Xenopus tropicalis	72.28	0.00e+00	2422.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence