iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ocu-073961

Ensembl Protein ID

ENSOCUP00000006924.2

UniProt Accession

G1SUA1; G1SUA1_RABIT

Genbank Protein ID

ENSOCUP00000006924

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

AAGW02025284

Gene Name

KDM5B

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSOCUG00000008003.3	ENSOCUT00000008011.3	ENSOCUP00000006924.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	4.70e-22	78.0	311	357

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 3    vClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCr 52
           vCl+Cg+g++++  l+ C+ C++ +H  Cl ++   ++p+ + w CpkC 
   Q: 311  VCLLCGSGSDED-RLLLCDGCDDSYHTFCLIPP-LHDVPKGD-WRCPKCL 357
           8*********88.6*******************.*******7.******5 PP

Organism

Oryctolagus cuniculus

Protein Sequence
(Fasta)

MEAATALCPG PRPALPLGGP GPLGEFLPPP ECPVFEPSWE EFADPFAFIH KIRPIAEQTG 60
ICKVRPPPDW QPPFACDVDK LHFTPRIQRL NELEAQTRVK LNFLDQIAKY WELQGSTLKI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTGACCCCTC CCTGACAGAC GCGCTCCTGA GCCCGAGAGC CGTCGCCAGC GTCGTGTCCG 60
CGAGCGCTCA GCTCCTAGAA GAGCAGAGGT GCCAGCACCC CGAGCAGCCG CGACGCACGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001606--ARID_dom
IPR003347--JmjC_dom
IPR003349--JmjN
IPR013637--Lys_sp_deMease-like_dom
IPR019786--Zinc_finger_PHD-type_CS
IPR004198--Znf_C5HC2
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51011--ARID
PS51184--JMJC
PS51183--JMJN
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF01388--ARID
PF02373--JmjC
PF02375--JmjN
PF00628--PHD
PF08429--PLU-1
PF02928--zf-C5HC2

SMART

SM00501--BRIGHT
SM00558--JmjC
SM00545--JmjN
SM00249--PHD

Gene Ontology

GO:0005829--C:cytosol
GO:0005634--C:nucleus
GO:0003677--F:DNA binding
GO:0034648--F:histone demethylase activity (H3-dimethyl-K4 specific)
GO:0034647--F:histone demethylase activity (H3-trimethyl-K4 specific)
GO:0016706--F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0003714--F:transcription corepressor activity
GO:0008270--F:zinc ion binding
GO:0060444--P:branching involved in mammary gland duct morphogenesis
GO:0060763--P:mammary duct terminal end bud growth
GO:0045892--P:negative regulation of transcription, DNA-templated
GO:0010628--P:positive regulation of gene expression
GO:0033601--P:positive regulation of mammary gland epithelial cell proliferation
GO:0009791--P:post-embryonic development
GO:2000864--P:regulation of estradiol secretion
GO:0007338--P:single fertilization
GO:0061038--P:uterus morphogenesis

KEGG

ocu:100356218

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000552	Aegilops tauschii	32.35	5.00e-102	366.00
IUUC-Aml-001963	Ailuropoda melanoleuca	92.69	0.00e+00	2675.00
IUUC-Apl-003770	Anas platyrhynchos	83.81	0.00e+00	2123.00
IUUC-Aca-004867	Anolis carolinensis	79.82	0.00e+00	2423.00
IUUC-Ath-007218	Arabidopsis thaliana	35.56	4.00e-09	58.50
IUUC-Acl-008162	Aspergillus clavatus	31.90	2.00e-114	407.00
IUUC-Ani-009139	Aspergillus nidulans	30.75	2.00e-108	387.00
IUUC-Ame-010620	Astyanax mexicanus	62.46	0.00e+00	1920.00
IUUC-Bta-012733	Bos taurus	90.03	0.00e+00	2608.00
IUUC-Bdi-014050	Brachypodium distachyon	29.51	2.00e-122	434.00
IUUC-Bol-015336	Brassica oleracea	34.23	3.00e-14	75.50
IUUC-Cja-019050	Callithrix jacchus	92.98	0.00e+00	2788.00
IUUC-Cfa-021015	Canis familiaris	92.75	0.00e+00	2669.00
IUUC-Cpo-022340	Cavia porcellus	92.75	0.00e+00	2645.00
IUUC-Csa-023441	Chlorocebus sabaeus	93.39	0.00e+00	2759.00
IUUC-Cho-024823	Choloepus hoffmanni	97.60	0.00e+00	1699.00
IUUC-Cgl-026613	Colletotrichum gloeosporioides	29.73	1.00e-107	385.00
IUUC-Cne-026851	Cryptococcus neoformans	29.53	4.00e-114	407.00
IUUC-Dre-027707	Danio rerio	61.56	0.00e+00	1838.00
IUUC-Dno-028978	Dasypus novemcinctus	92.72	0.00e+00	2735.00
IUUC-Dor-030854	Dipodomys ordii	82.11	0.00e+00	1819.00
IUUC-Ete-032760	Echinops telfairi	87.93	0.00e+00	1771.00
IUUC-Eca-034370	Equus caballus	93.02	0.00e+00	2611.00
IUUC-Eeu-035012	Erinaceus europaeus	75.60	0.00e+00	1840.00
IUUC-Fca-035494	Felis catus	93.09	0.00e+00	2667.00
IUUC-Fal-037631	Ficedula albicollis	81.42	0.00e+00	2353.00
IUUC-Gmo-039522	Gadus morhua	59.05	0.00e+00	1718.00
IUUC-Gga-040802	Gallus gallus	82.22	0.00e+00	2386.00
IUUC-Gac-041563	Gasterosteus aculeatus	62.04	0.00e+00	1849.00
IUUC-Gma-042675	Glycine max	32.90	7.00e-101	362.00
IUUC-Ggo-044856	Gorilla gorilla	75.44	0.00e+00	2069.00
IUUC-Hsa-045888	Homo sapiens	91.16	0.00e+00	2766.00
IUUC-Hvu-047583	Hordeum vulgare	43.04	1.00e-15	78.60
IUUC-Itr-048297	Ictidomys tridecemlineatus	93.33	0.00e+00	2733.00
IUUC-Lch-050483	Latimeria chalumnae	66.33	0.00e+00	2014.00
IUUC-Lpe-051537	Leersia perrieri	32.09	4.00e-92	333.00
IUUC-Loc-052550	Lepisosteus oculatus	70.90	0.00e+00	2112.00
IUUC-Laf-053761	Loxodonta africana	91.40	0.00e+00	2621.00
IUUC-Mcc-055505	Macaca mulatta	91.29	0.00e+00	2771.00
IUUC-Mga-059358	Meleagris gallopavo	80.80	0.00e+00	2352.00
IUUC-Mmr-060863	Microcebus murinus	93.20	0.00e+00	2755.00
IUUC-Mdo-061957	Monodelphis domestica	86.47	0.00e+00	2606.00
IUUC-Mmu-063944	Mus musculus	91.28	0.00e+00	2683.00
IUUC-Mac-065069	Musa acuminata	36.04	2.00e-08	56.20
IUUC-Mpu-066719	Mustela putorius furo	91.09	0.00e+00	2726.00
IUUC-Mlu-068086	Myotis lucifugus	87.89	0.00e+00	2538.00
IUUC-Nle-069256	Nomascus leucogenys	90.30	0.00e+00	2726.00
IUUC-Ont-071756	Oreochromis niloticus	62.53	0.00e+00	1877.00
IUUC-Oan-073568	Ornithorhynchus anatinus	87.80	0.00e+00	2615.00
IUUC-Ogl-077886	Oryza glaberrima	38.83	1.00e-16	82.00
IUUC-Olo-080668	Oryza longistaminata	38.83	5.00e-16	81.30
IUUC-Opu-083164	Oryza punctata	31.99	4.00e-89	323.00
IUUC-Osa-085487	Oryza sativa	38.83	1.00e-16	82.00
IUUC-Ola-086448	Oryzias latipes	61.95	0.00e+00	1847.00
IUUC-Oga-088501	Otolemur garnettii	88.30	0.00e+00	2288.00
IUUC-Oar-090162	Ovis aries	89.42	0.00e+00	2590.00
IUUC-Ptr-090816	Pan troglodytes	91.29	0.00e+00	2778.00
IUUC-Pan-092764	Papio anubis	93.46	0.00e+00	2763.00
IUUC-Psi-093918	Pelodiscus sinensis	80.87	0.00e+00	2169.00
IUUC-Pfo-096672	Poecilia formosa	62.48	0.00e+00	1816.00
IUUC-Pab-097854	Pongo abelii	93.50	0.00e+00	2195.00
IUUC-Pca-100241	Procavia capensis	86.81	0.00e+00	1694.00
IUUC-Pva-103035	Pteropus vampyrus	84.67	0.00e+00	2192.00
IUUC-Rno-105574	Rattus norvegicus	89.76	0.00e+00	2615.00
IUUC-Sce-106207	Saccharomyces cerevisiae	35.35	4.00e-73	269.00
IUUC-Sly-111298	Solanum lycopersicum	42.44	8.00e-103	369.00
IUUC-Sar-113477	Sorex araneus	89.98	0.00e+00	2389.00
IUUC-Ssc-116132	Sus scrofa	93.63	0.00e+00	2388.00
IUUC-Tgu-117452	Taeniopygia guttata	82.21	0.00e+00	2360.00
IUUC-Tru-117561	Takifugu rubripes	63.25	0.00e+00	1729.00
IUUC-Tsy-119271	Tarsius syrichta	90.30	0.00e+00	2077.00
IUUC-Tni-119650	Tetraodon nigroviridis	65.48	0.00e+00	1749.00
IUUC-Tur-126632	Triticum urartu	32.35	3.00e-101	363.00
IUUC-Tbe-127890	Tupaia belangeri	84.86	0.00e+00	1449.00
IUUC-Ttr-128546	Tursiops truncatus	90.15	0.00e+00	2015.00
IUUC-Vpa-130432	Vicugna pacos	87.94	0.00e+00	1523.00
IUUC-Xtr-132008	Xenopus tropicalis	70.68	0.00e+00	2092.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence