iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-006861

UUCD1 version

UUC-ArT-01452

Ensembl Protein ID

AT1G23980.1

UniProt Accession

Q8GW38; Q9LR95; ATL47_ARATH

Genbank Protein ID

AAF87153.1; AEE30463.1; BAC43674.1; AAQ55274.1

Protein Name

RING-H2 finger protein ATL47; RING-type E3 ubiquitin transferase ATL47

Genbank Nucleotide ID

AC002423; CP002684; AK119101; BT010323

Gene Name

ATL47; At1g23980; T23E23.15

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT1G23980	AT1G23980.1	AT1G23980.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein Expression/Proteomics

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/RING	RING	16339806

Classification

Family	E-value	Score	Start	End
E3 activity/RING/RING	8.50e-08	33.5	144	186

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf..kdgplvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           Ca+Cl++f  +d +++lp C H+fh dC+  w         + +CPlCr
   Q: 144  CAVCLCEFseDDKLRLLPnCSHAFHIDCIDTW------LLSNSTCPLCR 186
           ********88666*******************......888889****8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MSERRIHYSQ LKNDNLNQIS PSSAPSPITL NHQLTDSSSS SSSGGNNRIS PIILFIIVLL 60
SVIFFICSIL HLLVRYYLKK KRSNLSSSPN ESNQNPEFSD SDTYQRQLQQ LFHLHDSGLD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATCAAAAAAA AAAAATGTCT GAGAGGAGGA TTCATTATTC CCAGCTCAAA AACGACAACT 60
TGAATCAAAT CTCGCCTTCT TCTGCTCCTT CTCCAATCAC CCTGAATCAT CAATTAACCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0808--Transferase
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

ath:AT1G23980

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006330	Arabidopsis lyrata	80.83	4.00e-128	450.00
IUUC-Ago-007872	Ashbya gossypii	34.48	7.00e-11	59.30
IUUC-Bol-015919	Brassica oleracea	73.26	2.00e-117	414.00
IUUC-Bra-017741	Brassica rapa	72.30	6.00e-115	406.00
IUUC-Cfa-020202	Canis familiaris	41.90	3.00e-17	82.80
IUUC-Cre-022755	Chlamydomonas reinhardtii	55.81	3.00e-13	65.10
IUUC-Gma-042866	Glycine max	59.34	2.00e-78	285.00
IUUC-Mtr-057863	Medicago truncatula	61.85	6.00e-72	263.00
IUUC-Mac-064534	Musa acuminata	50.00	2.00e-59	221.00
IUUC-Mlu-068129	Myotis lucifugus	34.65	4.00e-16	79.30
IUUC-Ppa-095197	Physcomitrella patens	49.32	4.00e-33	135.00
IUUC-Smo-109112	Selaginella moellendorffii	77.27	5.00e-29	117.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence