iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-006818

Ensembl Protein ID

AT5G52660.2

UniProt Accession

Q8H0W3; Q8LAP4; Q9LTF1; RVE6_ARATH

Genbank Protein ID

AAS58514.1; CAI77451.1; BAA98084.1; AED96246.1; AED96247.1; AAN72013.1; ABF85784.1; AAM65227.1

Protein Name

Protein REVEILLE 6

Genbank Nucleotide ID

AY550303; AJ937210; AB025606; CP002688; CP002688; BT002002; BT025882; AY087690

Gene Name

RVE6; At5g52660; F6N7.15

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G52660	AT5G52660.2	AT5G52660.2
AT5G52660	AT5G52660.1	AT5G52660.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
DUB/JAMM	44.00	6.00e-06	49.70	IUUC-Hsa-046902

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Arabidopsis thaliana

Functional Description
(View)

Probable transcription factor.

Protein Sequence
(Fasta)

MVSRNSDGYF LDPTGMTVPG LGPSFTAAVS SSSSPTTSST AVAVADVTAM VSSSEEDLSK 60
KIRKPYTITK SRESWTEPEH DKFLEALQLF DRDWKKIEAF IGSKTVIQIR SHAQKYFLKV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATTTTGCCGA CCTCAAAAAC GATCACAAGA ATAAGTTTCT TTCATCGAGA AACACAACAT 60
ATACACAAAA AAACTATAGC TTATAAATTT ATTAATATTT TAATAAAATC TCTGCCGTCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0025--Alternative splicing
KW-0181--Complete proteome
KW-0238--DNA-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0804--Transcription
KW-0805--Transcription regulation

Interpro

IPR009057--Homeobox-like
IPR017930--Myb_dom
IPR006447--Myb_dom_plants
IPR001005--SANT/Myb

PROSITE

PS51294--HTH_MYB

Pfam

PF00249--Myb_DNA-binding

SMART

SM00717--SANT

Gene Ontology

GO:0005634--C:nucleus
GO:0003677--F:DNA binding
GO:0003700--F:transcription factor activity, sequence-specific DNA binding
GO:0042752--P:regulation of circadian rhythm
GO:0009737--P:response to abscisic acid
GO:0046686--P:response to cadmium ion
GO:0009723--P:response to ethylene
GO:0009739--P:response to gibberellin
GO:0009753--P:response to jasmonic acid
GO:0009751--P:response to salicylic acid
GO:0009651--P:response to salt stress
GO:0006351--P:transcription, DNA-templated

KEGG

ath:AT5G52660

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005879	Arabidopsis lyrata	91.95	2.00e-140	490.00
IUUC-Bol-015375	Brassica oleracea	53.26	2.00e-44	171.00
IUUC-Bra-017353	Brassica rapa	80.06	2.00e-121	427.00
IUUC-Cja-019242	Callithrix jacchus	33.70	7.00e-09	55.50
IUUC-Cre-022774	Chlamydomonas reinhardtii	36.92	8.00e-08	50.80
IUUC-Csa-023482	Chlorocebus sabaeus	33.70	1.00e-08	54.70
IUUC-Cho-024724	Choloepus hoffmanni	44.19	2.00e-06	47.40
IUUC-Cme-027237	Cyanidioschyzon merolae	41.79	1.00e-11	64.30
IUUC-Dre-028234	Danio rerio	37.93	1.00e-07	51.60
IUUC-Gma-043648	Glycine max	56.59	9.00e-64	236.00
IUUC-Ggo-044894	Gorilla gorilla	33.70	4.00e-09	56.20
IUUC-Hsa-046902	Homo sapiens	33.70	9.00e-09	55.10
IUUC-Hvu-047369	Hordeum vulgare	38.46	5.00e-06	44.30
IUUC-Mcc-055385	Macaca mulatta	33.70	1.00e-08	55.10
IUUC-Mmr-060949	Microcebus murinus	30.77	2.00e-08	54.30
IUUC-Nle-069917	Nomascus leucogenys	32.61	1.00e-08	54.70
IUUC-Opr-070449	Ochotona princeps	46.51	1.00e-06	48.10
IUUC-Ocu-073867	Oryctolagus cuniculus	29.67	1.00e-07	51.20
IUUC-Ptr-091260	Pan troglodytes	33.70	9.00e-09	55.10
IUUC-Pan-092564	Papio anubis	33.70	1.00e-08	55.10
IUUC-Pma-094538	Petromyzon marinus	34.88	1.00e-04	39.70
IUUC-Pop-099207	Populus trichocarpa	55.81	4.00e-74	270.00
IUUC-Pca-100438	Procavia capensis	41.67	1.00e-07	51.20
IUUC-Ppe-101933	Prunus persica	56.12	6.00e-56	209.00
IUUC-Sly-111876	Solanum lycopersicum	66.17	4.00e-76	277.00
IUUC-Stu-112613	Solanum tuberosum	55.64	4.00e-59	220.00
IUUC-Sre-115088	Sporisorium reilianum	30.77	7.00e-03	36.20

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence