iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Tur-126557

Ensembl Protein ID

TRIUR3_08239-P1

UniProt Accession

M7ZTA4; M7ZTA4_TRIUA

Genbank Protein ID

EMS63367.1

Protein Name

E3 ubiquitin-protein ligase COP1

Genbank Nucleotide ID

KD070349

Gene Name

TRIUR3_08239

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
TRIUR3_08239	TRIUR3_08239-T1	TRIUR3_08239-P1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.00e-29	100.5	494	531
UBD/Beta-Prp	3.30e-41	142.1	318	618

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sdtllvsGsdDgtikvWDlrtgvllk 37
           gH+  v+ ++f s++ l+s+s D t+++WD++++ +l+
   Q: 494  GHKKAVSYVKFlSNNELASASTDSTLRLWDVKDNCPLR 531
           8999*******9889****************9998887 PP

UBD/Beta-Prp

   S: 10   ksvitcvkfspdksllatgsrdgtikvwdvttgkl........lrslsgheaevtavkfspdgkilvtgseD..rtikvwdlstgkcvhtlkgh 93
            + ++++ f +d++l+at++ +++ikv++++t           + ++   + + +++++++ +   v +s+D  +++ vwd++t++ v+ +++h
   Q: 318  ANIVSSIEFDRDDELFATAGVSKRIKVFEFSTVVNepsdvhcpVVEMATRS-KLSCLSWNKYS-KNVIASSDyeGIVTVWDVQTRQSVMEYEEH 409
           567899**************************5447777666655554444.599****9998.5677777777******************** PP
   S: 94   edsvlslsfspsg.dklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgk.llrtltgghtdsvy 184
           e++++s++fs++  + lvsGs+d  ++vw   t+q+ ++++   ++ +++v+++p +  +++ Gs+D  +  +dl++ +  l+ + g h+++v 
   Q: 410  EKRAWSVDFSRTEpKMLVSGSDDCKVKVWC--TNQEASAINIDMKANICSVKYNPGSsYYVAVGSADHHIHYFDLRNPSaPLHVFGG-HKKAVS 500
           ***********888***************4..444444478888888********99899999************887626899977.****** PP
   S: 185  slsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhn.............. 264
            ++f sn +el+s+s+d+t++lwd++ +  +rt++gh++  + v +s n+e++++gs+ + ++++   ++ + k  + h+              
   Q: 501  YVKFLSN-NELASASTDSTLRLWDVKDNCPLRTFRGHKNEKNFVGLSVNNEYIACGSETNEVFVY---HKAISKPASSHRflstdlddaeddpg 590
           ******8.7*******************99**********************************9...777777777777888889999****9 PP
   S: 265  ssvisvavlsfgdnvlvlgsedskvniw 292
           s +is  +++ + + ++++ + ++++++
   Q: 591  SYFISAVCWKSDSPTMLTANSQGTIKVL 618
           99999999*****************997 PP

Organism

Triticum urartu

Protein Sequence
(Fasta)

MALIKDAFLT ACGHSFCYMC IVTHLNHKSD CPCCANYLTK AQLYPNFLLD KILVVKKMSA 60
RQVAKTASPI DQFRHVVQQG NDMSVKELDS LMTLIAEKKR QMEQQESETN MQILLVFLHC 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCGCTCA TCAAGGACGC CTTCCTCACC GCCTGCGGCC ACAGCTTCTG CTACATGTGC 60
ATCGTCACGC ACCTCAACCA CAAGAGCGAC TGCCCCTGCT GCGCCAACTA CCTCACCAAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0436--Ligase
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
PS00518--ZF_RING_1

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0016604--C:nuclear body
GO:0016874--F:ligase activity
GO:0004842--F:ubiquitin-protein transferase activity
GO:0046283--P:anthocyanin-containing compound metabolic process
GO:0006281--P:DNA repair
GO:0009649--P:entrainment of circadian clock
GO:0009640--P:photomorphogenesis
GO:0048573--P:photoperiodism, flowering
GO:0010119--P:regulation of stomatal movement
GO:0009641--P:shade avoidance

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000885	Aegilops tauschii	97.31	0.00e+00	1283.00
IUUC-Aml-001265	Ailuropoda melanoleuca	40.66	1.00e-123	435.00
IUUC-Atr-002460	Amborella trichopoda	73.08	0.00e+00	923.00
IUUC-Apl-003796	Anas platyrhynchos	40.36	8.00e-120	423.00
IUUC-Aca-005078	Anolis carolinensis	40.31	2.00e-120	426.00
IUUC-Aly-006014	Arabidopsis lyrata	72.60	0.00e+00	948.00
IUUC-Ath-007636	Arabidopsis thaliana	72.92	0.00e+00	952.00
IUUC-Ame-011176	Astyanax mexicanus	56.20	4.00e-39	154.00
IUUC-Bta-012595	Bos taurus	40.78	4.00e-124	437.00
IUUC-Bdi-014152	Brachypodium distachyon	91.51	0.00e+00	1177.00
IUUC-Bol-016380	Brassica oleracea	72.12	0.00e+00	936.00
IUUC-Bra-017690	Brassica rapa	70.88	0.00e+00	910.00
IUUC-Cja-018926	Callithrix jacchus	40.87	3.00e-125	441.00
IUUC-Cfa-021088	Canis familiaris	40.47	4.00e-124	437.00
IUUC-Cpo-022442	Cavia porcellus	39.90	9.00e-118	416.00
IUUC-Cre-022579	Chlamydomonas reinhardtii	31.02	4.00e-36	144.00
IUUC-Csa-024119	Chlorocebus sabaeus	40.62	1.00e-123	436.00
IUUC-Cho-024883	Choloepus hoffmanni	33.99	2.00e-42	166.00
IUUC-Cin-025375	Ciona intestinalis	36.77	5.00e-113	400.00
IUUC-Cme-027350	Cyanidioschyzon merolae	44.35	2.00e-90	325.00
IUUC-Dre-028453	Danio rerio	40.91	9.00e-124	436.00
IUUC-Dno-029887	Dasypus novemcinctus	40.25	3.00e-123	435.00
IUUC-Dor-031110	Dipodomys ordii	39.62	5.00e-99	354.00
IUUC-Ete-033016	Echinops telfairi	53.92	2.00e-95	342.00
IUUC-Eca-034403	Equus caballus	40.19	1.00e-118	419.00
IUUC-Eeu-034690	Erinaceus europaeus	54.26	7.00e-90	323.00
IUUC-Fca-036475	Felis catus	40.36	3.00e-119	421.00
IUUC-Fal-037189	Ficedula albicollis	40.72	8.00e-125	439.00
IUUC-Gmo-039245	Gadus morhua	39.18	7.00e-119	420.00
IUUC-Gga-040806	Gallus gallus	40.72	1.00e-124	439.00
IUUC-Gac-042177	Gasterosteus aculeatus	39.69	4.00e-121	427.00
IUUC-Gma-044187	Glycine max	71.07	0.00e+00	910.00
IUUC-Ggo-044430	Gorilla gorilla	36.40	4.00e-76	278.00
IUUC-Hsa-045853	Homo sapiens	40.72	6.00e-124	437.00
IUUC-Itr-048238	Ictidomys tridecemlineatus	54.19	1.00e-72	265.00
IUUC-Lch-050420	Latimeria chalumnae	40.25	5.00e-122	431.00
IUUC-Lpe-051219	Leersia perrieri	89.43	0.00e+00	1147.00
IUUC-Loc-052728	Lepisosteus oculatus	40.82	4.00e-115	407.00
IUUC-Laf-053775	Loxodonta africana	40.50	8.00e-124	436.00
IUUC-Meu-056595	Macropus eugenii	40.71	1.00e-58	219.00
IUUC-Mtr-058555	Medicago truncatula	70.75	0.00e+00	927.00
IUUC-Mga-059646	Meleagris gallopavo	40.36	1.00e-119	422.00
IUUC-Mmr-060990	Microcebus murinus	40.66	2.00e-123	436.00
IUUC-Mdo-062287	Monodelphis domestica	40.72	7.00e-124	437.00
IUUC-Mmu-064097	Mus musculus	40.56	5.00e-124	437.00
IUUC-Mac-065240	Musa acuminata	77.72	0.00e+00	1000.00
IUUC-Mpu-066612	Mustela putorius furo	40.36	1.00e-119	422.00
IUUC-Mlu-067967	Myotis lucifugus	40.23	2.00e-117	415.00
IUUC-Nle-069543	Nomascus leucogenys	40.72	7.00e-124	437.00
IUUC-Opr-070366	Ochotona princeps	46.27	1.00e-47	183.00
IUUC-Ont-071522	Oreochromis niloticus	40.00	7.00e-121	427.00
IUUC-Oan-073409	Ornithorhynchus anatinus	40.29	9.00e-118	416.00
IUUC-Ocu-073756	Oryctolagus cuniculus	40.52	7.00e-119	420.00
IUUC-Oba-075149	Oryza barthii	90.35	0.00e+00	1171.00
IUUC-Obr-076563	Oryza brachyantha	89.58	0.00e+00	1166.00
IUUC-Ogl-077701	Oryza glaberrima	90.54	0.00e+00	1176.00
IUUC-Ogu-078383	Oryza glumaepatula	90.54	0.00e+00	1176.00
IUUC-Oin-079965	Oryza indica	85.85	0.00e+00	1113.00
IUUC-Olo-080639	Oryza longistaminata	87.85	0.00e+00	1164.00
IUUC-Ome-081821	Oryza meridionalis	89.98	0.00e+00	1118.00
IUUC-Oni-082622	Oryza nivara	90.54	0.00e+00	1176.00
IUUC-Opu-083295	Oryza punctata	90.38	0.00e+00	1173.00
IUUC-Oru-084661	Oryza rufipogon	90.54	0.00e+00	1176.00
IUUC-Osa-085766	Oryza sativa	90.54	0.00e+00	1176.00
IUUC-Ola-086727	Oryzias latipes	40.56	4.00e-124	437.00
IUUC-Olu-087702	Ostreococcus lucimarinus	48.87	3.00e-79	287.00
IUUC-Oga-088215	Otolemur garnettii	40.36	5.00e-119	421.00
IUUC-Oar-089880	Ovis aries	40.36	5.00e-119	420.00
IUUC-Ptr-090597	Pan troglodytes	40.72	6.00e-124	437.00
IUUC-Pan-091987	Papio anubis	40.72	4.00e-124	437.00
IUUC-Psi-094033	Pelodiscus sinensis	40.57	2.00e-124	438.00
IUUC-Pma-094587	Petromyzon marinus	38.17	4.00e-108	384.00
IUUC-Ppa-095401	Physcomitrella patens	64.51	0.00e+00	795.00
IUUC-Pfo-097388	Poecilia formosa	39.94	2.00e-119	422.00
IUUC-Pab-098029	Pongo abelii	40.72	5.00e-124	437.00
IUUC-Pop-099319	Populus trichocarpa	70.61	0.00e+00	916.00
IUUC-Pca-100846	Procavia capensis	48.64	1.00e-108	386.00
IUUC-Ppe-101250	Prunus persica	67.79	0.00e+00	833.00
IUUC-Pva-102407	Pteropus vampyrus	40.56	1.00e-120	426.00
IUUC-Rno-105312	Rattus norvegicus	40.56	2.00e-123	435.00
IUUC-Sha-106514	Sarcophilus harrisii	48.66	6.00e-103	366.00
IUUC-Smo-109418	Selaginella moellendorffii	61.72	0.00e+00	773.00
IUUC-Sit-110248	Setaria italica	89.42	0.00e+00	1162.00
IUUC-Sly-110895	Solanum lycopersicum	72.44	0.00e+00	957.00
IUUC-Stu-112882	Solanum tuberosum	69.87	0.00e+00	875.00
IUUC-Sar-113230	Sorex araneus	44.85	2.00e-71	262.00
IUUC-Sbi-113962	Sorghum bicolor	85.63	0.00e+00	1120.00
IUUC-Ssc-115987	Sus scrofa	28.44	9.00e-21	93.60
IUUC-Tgu-116471	Taeniopygia guttata	40.50	2.00e-123	435.00
IUUC-Tru-118231	Takifugu rubripes	41.07	1.00e-120	426.00
IUUC-Tsy-119415	Tarsius syrichta	40.16	5.00e-120	423.00
IUUC-Tni-120893	Tetraodon nigroviridis	41.16	2.00e-120	425.00
IUUC-Tca-121619	Theobroma cacao	71.36	0.00e+00	943.00
IUUC-Tae-125317	Triticum aestivum	99.52	0.00e+00	1294.00
IUUC-Tbe-127253	Tupaia belangeri	45.10	5.00e-73	268.00
IUUC-Ttr-129100	Tursiops truncatus	40.03	3.00e-117	414.00
IUUC-Vpa-130613	Vicugna pacos	37.13	3.00e-103	367.00
IUUC-Vvi-130880	Vitis vinifera	75.87	0.00e+00	945.00
IUUC-Xtr-132033	Xenopus tropicalis	41.04	5.00e-130	457.00
IUUC-Xma-133421	Xiphophorus maculatus	39.47	1.00e-119	422.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence