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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Ath-006953
Ensembl Protein ID AT3G13970.1
UniProt Accession Q9LVK3; AT12B_ARATH
Genbank Protein ID BAB88397.1; BAB02327.1; AEE75446.1; ABD57478.1; BAC43573.1
Protein Name Ubiquitin-like protein ATG12B; Autophagy-related protein 12b
Genbank Nucleotide ID AB073185; AB019229; CP002686; BT024653; AK118997
Gene Name ATG12B; APG12; APG12B; At3g13970; MDC16.9
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT3G13970 AT3G13970.3 AT3G13970.3
AT3G13970 AT3G13970.1 AT3G13970.1
AT3G13970 AT3G13970.4 AT3G13970.4
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
HINTMentha
Protein 3D Structure
PDBMMDB
Protein Expression/Proteomics
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
ULD/UBL/ATG12 42.86 2.00e-17 84.70 IUUC-Hsa-046903
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description


     Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagy vesicles formation. Conjugation with ATG5 through a ubiquitin-like conjugating system involving also ATG7 as an E1-like activating enzyme and ATG10 as an E2-like conjugating enzyme, is essential for its function. ATG12/ATG5 conjugate has an essential role in plant nutrient recycling.
 Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagy vesicles formation. Conjugation with ATG5 through a ubiquitin-like conjugating system involving also ATG7 as an E1-like activating enzyme and ATG10 as an E2-like conjugating enzyme, is essential for its function. ATG12/ATG5 conjugate has an essential role in plant nutrient recycling.
Protein Sequence
(Fasta)
MATESPNSVQ KIVVHLRATG GAPILKQSKF KVSGSDKFAN VIDFLRRQLH SDSLFVYVNS 60
AFSPNPDESV IDLYNNFGFD GKLVVNYACS MAWG 94
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Protein Fasta Sequence


>IUUC-Ath-006953|ULD,ATG12|Arabidopsis thaliana
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Nucleotide Sequence
(Fasta)
GAAATCTTTA ACTTCCTCCA AAATCGTTCT TCTCAAGTTT TTTCTACTTC CAAAGTCGCA 60
ACAATGGCGA CCGAATCTCC GAATTCTGTT CAGAAAAGTG AGCCATTGAT TCTTTGACTT 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ath-006953|ULD,ATG12|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0002--3D-structure
KW-0007--Acetylation
KW-0072--Autophagy
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-1017--Isopeptide bond
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0833--Ubl conjugation pathway
Interpro

IPR007242--Atg12
IPR029071--Ubiquitin-rel_dom
Pfam

PF04110--APG12
Gene Ontology

GO:0034274--C:Atg12-Atg5-Atg16 complex
GO:0034045--C:pre-autophagosomal structure membrane
GO:0019776--F:Atg8 ligase activity
GO:0000045--P:autophagosome assembly
GO:0006914--P:autophagy
GO:0006501--P:C-terminal protein lipidation
GO:0000422--P:mitophagy
GO:0044804--P:nucleophagy
GO:0015031--P:protein transport
KEGG ath:AT3G13970
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-001177 Aegilops tauschii 75.29 1.00e-36 142.00
IUUC-Aml-002116 Ailuropoda melanoleuca 43.88 1.00e-18 84.70
IUUC-Atr-002615 Amborella trichopoda 80.85 5.00e-44 167.00
IUUC-Apl-003753 Anas platyrhynchos 55.00 1.00e-09 53.50
IUUC-Aca-005231 Anolis carolinensis 44.33 1.00e-14 71.20
IUUC-Aly-006172 Arabidopsis lyrata 88.30 6.00e-47 177.00
IUUC-Ago-007970 Ashbya gossypii 29.76 1.00e-05 42.00
IUUC-Acl-008072 Aspergillus clavatus 43.68 1.00e-15 73.90
IUUC-Afl-008725 Aspergillus flavus 43.68 9.00e-16 75.90
IUUC-Afu-008967 Aspergillus fumigatus 43.68 3.00e-15 73.90
IUUC-Ani-009248 Aspergillus nidulans 42.53 5.00e-15 73.20
IUUC-Ang-009684 Aspergillus niger 44.19 7.00e-15 72.80
IUUC-Aor-009947 Aspergillus oryzae 43.68 9.00e-16 75.90
IUUC-Ame-011656 Astyanax mexicanus 42.05 3.00e-15 73.20
IUUC-Bgr-012174 Blumeria graminis 42.70 1.00e-13 67.80
IUUC-Bta-012483 Bos taurus 42.86 9.00e-19 84.70
IUUC-Bci-013755 Botrytis cinerea 37.50 1.00e-10 57.80
IUUC-Bdi-014156 Brachypodium distachyon 76.47 2.00e-37 145.00
IUUC-Bol-015683 Brassica oleracea 89.13 2.00e-45 172.00
IUUC-Bra-016802 Brassica rapa 90.91 2.00e-44 169.00
IUUC-Cel-018242 Caenorhabditis elegans 32.97 3.00e-08 49.70
IUUC-Cja-019514 Callithrix jacchus 43.30 2.00e-18 84.70
IUUC-Cfa-020748 Canis familiaris 43.88 1.00e-18 85.10
IUUC-Cpo-021965 Cavia porcellus 43.88 1.00e-18 85.10
IUUC-Cre-023009 Chlamydomonas reinhardtii 50.59 2.00e-21 92.40
IUUC-Csa-023494 Chlorocebus sabaeus 42.86 1.00e-18 85.10
IUUC-Cho-024631 Choloepus hoffmanni 42.86 2.00e-18 84.30
IUUC-Cin-025609 Ciona intestinalis 49.43 6.00e-19 84.30
IUUC-Cgl-026722 Colletotrichum gloeosporioides 38.20 3.00e-12 63.20
IUUC-Dre-027479 Danio rerio 42.11 1.00e-16 77.80
IUUC-Dno-029693 Dasypus novemcinctus 37.36 3.00e-12 63.50
IUUC-Dse-031440 Dothistroma septosporum 40.23 2.00e-14 70.90
IUUC-Dme-031892 Drosophila melanogaster 36.78 7.00e-13 64.70
IUUC-Ete-032550 Echinops telfairi 41.67 7.00e-18 81.60
IUUC-Eca-033553 Equus caballus 42.86 9.00e-19 85.10
IUUC-Fca-036524 Felis catus 43.30 2.00e-18 84.30
IUUC-Fal-036942 Ficedula albicollis 41.67 6.00e-17 77.80
IUUC-Fox-037753 Fusarium oxysporum 39.80 3.00e-14 70.50
IUUC-Gmo-039498 Gadus morhua 42.05 5.00e-15 72.00
IUUC-Ggr-039852 Gaeumannomyces graminis 40.45 4.00e-12 63.90
IUUC-Gga-041263 Gallus gallus 42.86 5.00e-18 82.80
IUUC-Gac-042346 Gasterosteus aculeatus 42.86 5.00e-15 72.40
IUUC-Gma-042896 Glycine max 82.98 3.00e-45 171.00
IUUC-Ggo-045601 Gorilla gorilla 42.86 2.00e-18 84.70
IUUC-Hsa-046903 Homo sapiens 42.86 8.00e-19 85.10
IUUC-Hvu-047239 Hordeum vulgare 77.65 3.00e-37 145.00
IUUC-Itr-048445 Ictidomys tridecemlineatus 42.86 2.00e-18 84.30
IUUC-Kpa-049355 Komagataella pastoris 32.65 2.00e-11 60.80
IUUC-Lch-050619 Latimeria chalumnae 45.45 2.00e-17 80.50
IUUC-Lma-053299 Leptosphaeria maculans 37.84 8.00e-10 55.10
IUUC-Laf-054205 Loxodonta africana 41.84 3.00e-18 83.20
IUUC-Meu-056804 Macropus eugenii 43.88 9.00e-19 85.10
IUUC-Mor-057052 Magnaporthe oryzae 38.89 5.00e-12 63.50
IUUC-Mtr-057961 Medicago truncatula 87.10 3.00e-46 175.00
IUUC-Mla-059045 Melampsora laricipopulina 49.44 9.00e-24 100.00
IUUC-Mvi-060360 Microbotryum violaceum 52.87 8.00e-24 101.00
IUUC-Mmr-061654 Microcebus murinus 42.86 3.00e-18 82.80
IUUC-Mdo-062649 Monodelphis domestica 41.84 5.00e-18 82.80
IUUC-Mmu-064105 Mus musculus 42.86 1.00e-18 84.70
IUUC-Mac-065532 Musa acuminata 81.91 3.00e-44 168.00
IUUC-Mpu-066269 Mustela putorius furo 44.33 8.00e-19 85.10
IUUC-Mlu-067631 Myotis lucifugus 42.86 3.00e-18 84.00
IUUC-Nfi-068468 Neosartorya fischeri 43.68 2.00e-15 73.60
IUUC-Ncr-068750 Neurospora crassa 34.83 7.00e-11 58.90
IUUC-Nle-069483 Nomascus leucogenys 42.86 2.00e-18 84.70
IUUC-Opr-070936 Ochotona princeps 42.86 3.00e-18 84.00
IUUC-Obr-076322 Oryza brachyantha 72.94 2.00e-36 142.00
IUUC-Ogl-077226 Oryza glaberrima 73.75 2.00e-34 135.00
IUUC-Oin-079220 Oryza indica 71.88 7.00e-26 107.00
IUUC-Olo-080688 Oryza longistaminata 73.75 2.00e-34 135.00
IUUC-Ome-081265 Oryza meridionalis 73.75 2.00e-34 135.00
IUUC-Oru-084342 Oryza rufipogon 72.94 8.00e-36 142.00
IUUC-Osa-086212 Oryza sativa 73.75 2.00e-34 135.00
IUUC-Ola-087277 Oryzias latipes 43.18 6.00e-16 75.10
IUUC-Olu-087780 Ostreococcus lucimarinus 35.96 7.00e-13 64.30
IUUC-Oga-088175 Otolemur garnettii 42.86 7.00e-19 85.50
IUUC-Oar-089477 Ovis aries 42.86 2.00e-18 84.70
IUUC-Ptr-091129 Pan troglodytes 42.86 2.00e-18 84.70
IUUC-Psi-093351 Pelodiscus sinensis 41.94 5.00e-18 82.80
IUUC-Pno-094948 Phaeosphaeria nodorum 38.46 3.00e-09 53.50
IUUC-Ppa-095788 Physcomitrella patens 67.37 1.00e-36 143.00
IUUC-Pfo-096993 Poecilia formosa 40.91 3.00e-14 69.70
IUUC-Pab-098502 Pongo abelii 42.86 2.00e-18 84.70
IUUC-Pop-098819 Populus trichocarpa 69.15 1.00e-38 150.00
IUUC-Pca-100144 Procavia capensis 31.63 8.00e-08 49.30
IUUC-Ppe-101560 Prunus persica 87.80 1.00e-40 156.00
IUUC-Pva-102810 Pteropus vampyrus 38.46 2.00e-10 57.80
IUUC-Pgr-103531 Puccinia graminis 50.57 3.00e-23 99.00
IUUC-Ptt-103753 Puccinia triticina 50.57 6.00e-23 98.20
IUUC-Pyt-104733 Pyrenophora triticirepentis 41.86 1.00e-13 68.20
IUUC-Rno-106072 Rattus norvegicus 44.90 2.00e-19 87.00
IUUC-Sce-106275 Saccharomyces cerevisiae 37.21 1.00e-13 68.60
IUUC-Sha-107554 Sarcophilus harrisii 43.88 9.00e-19 85.10
IUUC-Sja-107682 Schizosaccharomyces japonicus 34.09 1.00e-13 68.20
IUUC-Spo-108275 Schizosaccharomyces pombe 37.50 3.00e-16 76.60
IUUC-Smo-109151 Selaginella moellendorffii 55.56 8.00e-25 103.00
IUUC-Sit-110270 Setaria italica 81.18 4.00e-39 151.00
IUUC-Sly-111862 Solanum lycopersicum 78.72 1.00e-41 159.00
IUUC-Stu-112663 Solanum tuberosum 92.86 1.00e-19 87.40
IUUC-Sbi-114148 Sorghum bicolor 81.18 4.00e-39 151.00
IUUC-Sre-115216 Sporisorium reilianum 44.83 2.00e-20 90.90
IUUC-Ssc-116051 Sus scrofa 42.86 9.00e-19 85.10
IUUC-Tru-118466 Takifugu rubripes 43.90 3.00e-15 72.00
IUUC-Tsy-119334 Tarsius syrichta 42.27 4.00e-14 70.10
IUUC-Tni-119792 Tetraodon nigroviridis 43.90 2.00e-15 73.20
IUUC-Tca-121861 Theobroma cacao 86.17 2.00e-46 176.00
IUUC-Tvi-122499 Trichoderma virens 44.32 7.00e-15 71.60
IUUC-Tae-123431 Triticum aestivum 75.29 1.00e-36 142.00
IUUC-Tme-126934 Tuber melanosporum 39.13 4.00e-14 70.10
IUUC-Ttr-129001 Tursiops truncatus 39.58 5.00e-14 69.70
IUUC-Uma-129324 Ustilago maydis 47.13 4.00e-21 92.80
IUUC-Vda-129846 Verticillium dahliae 42.05 3.00e-14 70.10
IUUC-Vpa-130202 Vicugna pacos 57.50 3.00e-10 57.40
IUUC-Vvi-131474 Vitis vinifera 80.00 6.00e-34 135.00
IUUC-Xtr-132782 Xenopus tropicalis 40.82 2.00e-17 80.10
IUUC-Xma-134140 Xiphophorus maculatus 42.05 7.00e-15 72.00
IUUC-Yli-134517 Yarrowia lipolytica 38.89 6.00e-13 66.60
IUUC-Zma-134764 Zea mays 76.60 3.00e-39 152.00
Created Date 25-Jun-2017

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