iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Dre-028769

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

E3 ubiquitin-protein ligase RNF19B

Genbank Nucleotide ID

CR753876

Gene Name

rnf19b

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSDARG00000060926.6	ENSDART00000148080.1	ENSDARP00000116147.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RBR	4.10e-47	161.3	108	305

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RBR

   S: 1    CkvCllelsveeltvlleCehtfCkeClkqylelkikegqvteiscpaaecpekleeseikellveeelykryekllleevveadaalkw 90
           C++Cl++++ e+l+ l+ C+h+ C  Cl+qyl+++i e++ +++scp  ec e+l + +++ +l +++l+++ye++ll++++++d++++w
   Q: 108  CPLCLVRQPAEQLPELQGCSHRSCLCCLRQYLRIEITESR-VQLSCP--ECAERLAPWQVALILDDPNLMEKYEEFLLRRCLASDPDCRW 194
           ****************************************.99****..89*************************************** PP
   S: 91   cpapdCslvvllekea..eklevecekcgkefCveCkeewHeglsCkelkeklakteeek....eeaeskelleanskkCpkCkvyiek. 173
           cpapdC ++v+++ +a  ++l +++e+cg efC++Ck++wH++++C+++++++a + +++     +++ ++  ++++k+Cp+C +yi+k 
   Q: 195  CPAPDCGFAVIASGCAscPRLVCRREGCGAEFCYHCKQAWHPNQTCDSARQQRALSLRTHsnhsPSYTAEQGHTDDIKPCPRCGAYIIKm 284
           **************9988999******************************9998887776665566677788899************99 PP
   S: 174  .negCnhmtCakCkaefCwlC 193
            +++CnhmtCa C++efCwlC
   Q: 285  nDGSCNHMTCAVCGCEFCWLC 305
           7889***************** PP

Organism

Danio rerio

Protein Sequence
(Fasta)

EMGSEKDSES PHSSVSGIPN PKCRGPGKKQ GRISFHSLFH SKRGPRGSKA NVGTPLAQQL 60
HQQQQIQQQQ LLQPPTPTNV SSDPSTADPA EPLSTSQASL GGQELLECPL CLVRQPAEQL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GAAATGGGAT CCGAAAAGGA CTCTGAATCC CCCCACTCCT CGGTTAGTGG CATTCCCAAT 60
CCCAAATGTC GTGGACCGGG CAAGAAGCAA GGCAGGATCT CTTTTCATAG CCTCTTCCAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0677--Repeat
KW-0808--Transferase
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR016150--Casein_kin_II_reg-sub_b-sht
IPR031127--E3_UB_ligase_RBR
IPR002867--IBR_dom
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF01485--IBR

SMART

SM00647--IBR

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002183	Ailuropoda melanoleuca	66.15	0.00e+00	676.00
IUUC-Aca-004324	Anolis carolinensis	67.80	0.00e+00	700.00
IUUC-Ame-011813	Astyanax mexicanus	89.97	0.00e+00	1051.00
IUUC-Bta-013135	Bos taurus	68.45	0.00e+00	725.00
IUUC-Cel-018626	Caenorhabditis elegans	56.21	2.00e-108	387.00
IUUC-Cja-019264	Callithrix jacchus	64.40	0.00e+00	668.00
IUUC-Cpo-022502	Cavia porcellus	68.21	0.00e+00	637.00
IUUC-Cho-025032	Choloepus hoffmanni	56.46	3.00e-145	508.00
IUUC-Cin-025143	Ciona intestinalis	64.46	3.00e-40	157.00
IUUC-Ete-033008	Echinops telfairi	82.75	5.00e-122	431.00
IUUC-Gac-041619	Gasterosteus aculeatus	87.19	0.00e+00	927.00
IUUC-Hsa-045958	Homo sapiens	67.91	0.00e+00	724.00
IUUC-Itr-048425	Ictidomys tridecemlineatus	67.90	0.00e+00	627.00
IUUC-Lch-049552	Latimeria chalumnae	63.43	0.00e+00	788.00
IUUC-Loc-051738	Lepisosteus oculatus	78.54	0.00e+00	904.00
IUUC-Meu-055920	Macropus eugenii	68.69	0.00e+00	644.00
IUUC-Mdo-061985	Monodelphis domestica	67.23	0.00e+00	728.00
IUUC-Mmu-064262	Mus musculus	67.68	0.00e+00	725.00
IUUC-Mpu-066101	Mustela putorius furo	67.13	0.00e+00	716.00
IUUC-Ont-071298	Oreochromis niloticus	91.56	0.00e+00	984.00
IUUC-Oan-073219	Ornithorhynchus anatinus	67.74	7.00e-172	597.00
IUUC-Ola-086499	Oryzias latipes	87.63	0.00e+00	966.00
IUUC-Oga-088812	Otolemur garnettii	67.97	0.00e+00	693.00
IUUC-Oar-090353	Ovis aries	68.52	0.00e+00	639.00
IUUC-Pfo-096268	Poecilia formosa	87.89	0.00e+00	1021.00
IUUC-Pva-102542	Pteropus vampyrus	84.15	2.00e-140	492.00
IUUC-Sha-106512	Sarcophilus harrisii	66.67	0.00e+00	714.00
IUUC-Sar-113233	Sorex araneus	67.62	4.00e-162	564.00
IUUC-Ssc-115781	Sus scrofa	68.79	0.00e+00	751.00
IUUC-Tgu-117384	Taeniopygia guttata	75.52	3.00e-171	594.00
IUUC-Tru-117919	Takifugu rubripes	87.61	0.00e+00	951.00
IUUC-Tsy-119275	Tarsius syrichta	65.00	2.00e-170	592.00
IUUC-Tbe-127335	Tupaia belangeri	75.41	7.00e-147	513.00
IUUC-Vpa-130407	Vicugna pacos	63.50	1.00e-168	586.00
IUUC-Xtr-132325	Xenopus tropicalis	72.46	2.00e-177	615.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence