iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bta-012698

Ensembl Protein ID

ENSBTAP00000000891.4

UniProt Accession

F1MRM3; F1MRM3_BOVIN

Genbank Protein ID

ENSBTAP00000000891

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

DAAA02054389

Gene Name

RRP9

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSBTAG00000000670.4	ENSBTAT00000000891.4	ENSBTAP00000000891.4

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.80e-29	99.1	322	356
UBD/Beta-Prp	2.90e-43	148.3	145	406

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sdtllvsGsdDgtikvWDlrtgv 34
           gH++s+ ++++ ++ ++vsG+dDg++ +W l++ +
   Q: 322  GHQGSIDSIQLiNEEHMVSGADDGSVALWGLSKKR 356
           8*********9999***************987665 PP

UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkl...........lrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkc 86
           h+  itc+ ++pd+  ++++ +d ti+ w+v++g +             +  gh+  v ++ +s+dgk+l++g + ++i +w+ ++++ 
   Q: 145  HQLSITCLVVTPDDLAIFSAAKDCTIIKWSVESGRKlhviprakkgtEGQPPGHSTHVLCMAISSDGKYLASGDRSKLILIWEAQSCQH 233
           77899******************************9888888888877777888888******************************** PP
   S: 87   vhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtl 175
           ++t++gh d v  l+f + ++ l s+shdr ++vw++ +++ +e tl gh+++v  +   + ++++ +G+ D+tvr+W+++ ++ l   
   Q: 234  LYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVE-TLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQLVFY 321
           ******************99***********************9.***********************************999988765 PP
   S: 176  tgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnght...........dnvksvrfspnderlvsgssDgsiriWdlr 252
            g h++s+ s+++  + +++vsg++dg+v lw l++++ +  +++              +v+sv+++ n++++++gs+ +s+r+W + 
   Q: 322  -G-HQGSIDSIQLINE-EHMVSGADDGSVALWGLSKKRPLALQREAHglrgepgleqpFWVSSVAALLNTDLVATGSHNNSVRLWQCG 406
           .6.*********9886.7*****************999977776655588999999999**************************875 PP

Organism

Bos taurus

Protein Sequence
(Fasta)

MSATRAARKR GKPASGAGAG AEAFKRRRKG DSSGDKVKSK GGGKMNEEIS SDSESESLAL 60
RRTEEEEEEE LEETAQEKKL RLAKVYLEQL RQQEEEKAEA REFEEDQVAG RLKEDVLEQR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGTGAGTTCT CTAGCGGCTG CTGCAACACG CACCGTGGGC AGCATGTCGG CGACACGGGC 60
GGCTCGTAAG AGGGGAAAGC CGGCCTCAGG GGCCGGGGCT GGTGCGGAGG CCTTCAAGCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0031428--C:box C/D snoRNP complex
GO:0032040--C:small-subunit processome
GO:0030515--F:snoRNA binding
GO:0034511--F:U3 snoRNA binding
GO:0006364--P:rRNA processing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000586	Aegilops tauschii	34.03	1.00e-55	210.00
IUUC-Aml-002072	Ailuropoda melanoleuca	92.31	0.00e+00	747.00
IUUC-Atr-002824	Amborella trichopoda	36.67	2.00e-69	256.00
IUUC-Apl-003264	Anas platyrhynchos	74.60	2.00e-166	578.00
IUUC-Aca-004898	Anolis carolinensis	78.01	3.00e-180	624.00
IUUC-Aly-005535	Arabidopsis lyrata	39.63	4.00e-68	252.00
IUUC-Ath-007003	Arabidopsis thaliana	38.83	1.00e-66	247.00
IUUC-Ago-007710	Ashbya gossypii	27.94	9.00e-56	211.00
IUUC-Acl-008345	Aspergillus clavatus	33.42	4.00e-55	209.00
IUUC-Afl-008718	Aspergillus flavus	31.10	7.00e-53	201.00
IUUC-Afu-008966	Aspergillus fumigatus	29.59	1.00e-53	204.00
IUUC-Ani-009214	Aspergillus nidulans	31.28	5.00e-55	209.00
IUUC-Ang-009774	Aspergillus niger	33.59	7.00e-56	211.00
IUUC-Aor-009956	Aspergillus oryzae	31.10	7.00e-53	201.00
IUUC-Ate-010449	Aspergillus terreus	30.72	1.00e-53	204.00
IUUC-Ame-011860	Astyanax mexicanus	72.12	8.00e-170	589.00
IUUC-Bgr-012213	Blumeria graminis	30.82	7.00e-62	231.00
IUUC-Bci-013973	Botrytis cinerea	27.87	2.00e-59	223.00
IUUC-Bdi-014790	Brachypodium distachyon	36.65	1.00e-62	234.00
IUUC-Bol-016068	Brassica oleracea	39.68	1.00e-67	250.00
IUUC-Bra-017410	Brassica rapa	39.68	1.00e-62	233.00
IUUC-Cel-018616	Caenorhabditis elegans	36.22	4.00e-72	265.00
IUUC-Cja-019532	Callithrix jacchus	90.32	0.00e+00	740.00
IUUC-Cfa-020961	Canis familiaris	88.68	0.00e+00	738.00
IUUC-Cpo-021527	Cavia porcellus	89.92	0.00e+00	727.00
IUUC-Csa-023106	Chlorocebus sabaeus	92.97	0.00e+00	746.00
IUUC-Cin-025670	Ciona intestinalis	52.05	5.00e-122	431.00
IUUC-Csv-026172	Ciona savignyi	51.79	9.00e-116	410.00
IUUC-Cgl-026619	Colletotrichum gloeosporioides	32.56	9.00e-63	234.00
IUUC-Cne-027070	Cryptococcus neoformans	29.12	2.00e-45	176.00
IUUC-Cme-027125	Cyanidioschyzon merolae	25.86	2.00e-32	134.00
IUUC-Dre-027919	Danio rerio	68.46	6.00e-163	566.00
IUUC-Dno-029684	Dasypus novemcinctus	93.80	7.00e-168	583.00
IUUC-Dor-030363	Dipodomys ordii	84.73	3.00e-102	365.00
IUUC-Dse-031503	Dothistroma septosporum	31.00	1.00e-59	224.00
IUUC-Dme-031979	Drosophila melanogaster	43.77	2.00e-97	349.00
IUUC-Eca-033735	Equus caballus	95.26	0.00e+00	722.00
IUUC-Fca-036193	Felis catus	93.52	0.00e+00	739.00
IUUC-Fal-037058	Ficedula albicollis	71.67	1.00e-171	595.00
IUUC-Fox-038036	Fusarium oxysporum	32.26	1.00e-65	244.00
IUUC-Fso-038298	Fusarium solani	33.04	1.00e-64	241.00
IUUC-Gmo-038796	Gadus morhua	65.24	3.00e-143	501.00
IUUC-Ggr-040074	Gaeumannomyces graminis	30.50	3.00e-53	202.00
IUUC-Gga-040743	Gallus gallus	77.39	2.00e-135	474.00
IUUC-Gac-042583	Gasterosteus aculeatus	64.29	3.00e-164	571.00
IUUC-Gma-042659	Glycine max	39.55	3.00e-78	285.00
IUUC-Ggo-045543	Gorilla gorilla	92.84	0.00e+00	752.00
IUUC-Hsa-047017	Homo sapiens	93.88	0.00e+00	749.00
IUUC-Hvu-047173	Hordeum vulgare	37.66	2.00e-67	249.00
IUUC-Itr-048062	Ictidomys tridecemlineatus	88.21	0.00e+00	754.00
IUUC-Kpa-049262	Komagataella pastoris	32.16	5.00e-59	222.00
IUUC-Lch-050566	Latimeria chalumnae	72.70	7.00e-155	540.00
IUUC-Lpe-051651	Leersia perrieri	36.08	3.00e-66	246.00
IUUC-Loc-051997	Lepisosteus oculatus	71.47	2.00e-165	575.00
IUUC-Lma-053182	Leptosphaeria maculans	30.18	7.00e-58	218.00
IUUC-Laf-054105	Loxodonta africana	92.62	0.00e+00	706.00
IUUC-Mcc-055215	Macaca mulatta	92.97	0.00e+00	748.00
IUUC-Meu-055943	Macropus eugenii	80.55	0.00e+00	652.00
IUUC-Mor-057069	Magnaporthe oryzae	32.31	5.00e-62	232.00
IUUC-Mpo-057358	Magnaporthe poae	30.90	7.00e-51	195.00
IUUC-Mtr-058209	Medicago truncatula	38.85	7.00e-78	284.00
IUUC-Mla-059043	Melampsora laricipopulina	27.70	1.00e-46	181.00
IUUC-Mga-060024	Meleagris gallopavo	74.77	4.00e-153	533.00
IUUC-Mvi-060371	Microbotryum violaceum	32.34	2.00e-66	247.00
IUUC-Mmr-061403	Microcebus murinus	93.11	0.00e+00	728.00
IUUC-Mdo-063026	Monodelphis domestica	77.66	0.00e+00	665.00
IUUC-Mmu-063646	Mus musculus	93.03	0.00e+00	749.00
IUUC-Mac-065149	Musa acuminata	38.78	5.00e-77	281.00
IUUC-Mpu-065760	Mustela putorius furo	91.16	0.00e+00	763.00
IUUC-Mlu-067963	Myotis lucifugus	94.76	0.00e+00	751.00
IUUC-Nfi-068288	Neosartorya fischeri	31.67	6.00e-57	215.00
IUUC-Ncr-068679	Neurospora crassa	32.11	9.00e-56	211.00
IUUC-Nle-069766	Nomascus leucogenys	84.66	0.00e+00	670.00
IUUC-Opr-070906	Ochotona princeps	90.53	0.00e+00	743.00
IUUC-Ont-071661	Oreochromis niloticus	69.11	5.00e-166	577.00
IUUC-Oan-073465	Ornithorhynchus anatinus	66.46	2.00e-148	519.00
IUUC-Ocu-074263	Oryctolagus cuniculus	90.55	0.00e+00	744.00
IUUC-Oba-075607	Oryza barthii	38.16	2.00e-62	232.00
IUUC-Ogl-077387	Oryza glaberrima	37.57	5.00e-66	244.00
IUUC-Ogu-078323	Oryza glumaepatula	38.40	3.00e-66	246.00
IUUC-Oin-079977	Oryza indica	32.43	2.00e-45	176.00
IUUC-Olo-080857	Oryza longistaminata	38.28	2.00e-66	246.00
IUUC-Ome-081568	Oryza meridionalis	38.02	1.00e-65	244.00
IUUC-Oni-082685	Oryza nivara	38.40	2.00e-69	256.00
IUUC-Opu-084049	Oryza punctata	38.67	4.00e-66	245.00
IUUC-Oru-084348	Oryza rufipogon	38.40	2.00e-69	256.00
IUUC-Osa-086076	Oryza sativa	38.40	2.00e-69	256.00
IUUC-Ola-086991	Oryzias latipes	69.97	7.00e-164	570.00
IUUC-Olu-087891	Ostreococcus lucimarinus	36.34	3.00e-65	241.00
IUUC-Oga-088991	Otolemur garnettii	92.83	0.00e+00	744.00
IUUC-Oar-090430	Ovis aries	98.50	0.00e+00	752.00
IUUC-Ptr-091359	Pan troglodytes	93.65	0.00e+00	749.00
IUUC-Pan-092499	Papio anubis	92.74	0.00e+00	746.00
IUUC-Pma-094447	Petromyzon marinus	60.52	2.00e-127	448.00
IUUC-Pno-095008	Phaeosphaeria nodorum	30.06	2.00e-60	227.00
IUUC-Ppa-095680	Physcomitrella patens	39.11	2.00e-77	283.00
IUUC-Pfo-096430	Poecilia formosa	68.69	9.00e-165	573.00
IUUC-Pab-097649	Pongo abelii	93.42	0.00e+00	745.00
IUUC-Pop-100055	Populus trichocarpa	40.79	2.00e-78	286.00
IUUC-Pca-100317	Procavia capensis	73.84	6.00e-129	454.00
IUUC-Ppe-101999	Prunus persica	38.16	3.00e-79	288.00
IUUC-Pva-103046	Pteropus vampyrus	95.01	0.00e+00	765.00
IUUC-Pgr-103655	Puccinia graminis	30.08	2.00e-51	196.00
IUUC-Ptt-103812	Puccinia triticina	31.76	4.00e-47	182.00
IUUC-Pte-104243	Pyrenophora teres	29.71	1.00e-54	207.00
IUUC-Pyt-104512	Pyrenophora triticirepentis	29.90	2.00e-57	217.00
IUUC-Rno-104973	Rattus norvegicus	92.24	0.00e+00	734.00
IUUC-Sce-106329	Saccharomyces cerevisiae	25.84	5.00e-51	195.00
IUUC-Sha-106941	Sarcophilus harrisii	83.59	0.00e+00	667.00
IUUC-Sja-107821	Schizosaccharomyces japonicus	32.35	4.00e-62	232.00
IUUC-Spo-108329	Schizosaccharomyces pombe	36.64	9.00e-71	261.00
IUUC-Ssl-108552	Sclerotinia sclerotiorum	28.70	2.00e-59	223.00
IUUC-Smo-109198	Selaginella moellendorffii	37.80	2.00e-63	235.00
IUUC-Sit-109694	Setaria italica	36.47	1.00e-71	264.00
IUUC-Sly-111294	Solanum lycopersicum	38.92	6.00e-79	288.00
IUUC-Stu-112747	Solanum tuberosum	39.43	5.00e-80	291.00
IUUC-Sar-113315	Sorex araneus	74.29	4.00e-77	281.00
IUUC-Sbi-114694	Sorghum bicolor	36.88	8.00e-72	264.00
IUUC-Sre-114937	Sporisorium reilianum	29.07	2.00e-64	240.00
IUUC-Ssc-116127	Sus scrofa	96.51	0.00e+00	754.00
IUUC-Tgu-117242	Taeniopygia guttata	71.03	1.00e-108	385.00
IUUC-Tru-118285	Takifugu rubripes	68.53	5.00e-169	587.00
IUUC-Tni-120368	Tetraodon nigroviridis	68.02	7.00e-163	566.00
IUUC-Tca-121724	Theobroma cacao	37.06	9.00e-72	264.00
IUUC-Tre-122106	Trichoderma reesei	33.12	1.00e-67	251.00
IUUC-Tvi-122526	Trichoderma virens	32.20	2.00e-67	249.00
IUUC-Tae-122939	Triticum aestivum	37.14	4.00e-66	245.00
IUUC-Tur-126548	Triticum urartu	36.91	7.00e-66	244.00
IUUC-Tme-126985	Tuber melanosporum	34.64	3.00e-62	233.00
IUUC-Tbe-127923	Tupaia belangeri	94.72	0.00e+00	734.00
IUUC-Ttr-129308	Tursiops truncatus	91.35	0.00e+00	694.00
IUUC-Uma-129472	Ustilago maydis	30.64	1.00e-58	221.00
IUUC-Vda-129910	Verticillium dahliae	31.83	2.00e-63	236.00
IUUC-Vvi-131683	Vitis vinifera	39.22	7.00e-85	308.00
IUUC-Xtr-132118	Xenopus tropicalis	66.92	2.00e-156	545.00
IUUC-Xma-133804	Xiphophorus maculatus	68.43	7.00e-164	570.00
IUUC-Yli-134639	Yarrowia lipolytica	31.99	5.00e-59	221.00
IUUC-Zma-135884	Zea mays	36.58	8.00e-71	261.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence