iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ssc-115573

Ensembl Protein ID

ENSSSCP00000010674.2

UniProt Accession

F1RFD3; F1RFD3_PIG

Genbank Protein ID

JAA53734.1

Protein Name

Splicing factor 3A subunit 1

Genbank Nucleotide ID

CT956025

Gene Name

SF3A1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSSSCG00000010002.2	ENSSSCT00000010959.2	ENSSSCP00000010674.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UBQ/UBQ_Other	8.10e-17	61.2	707	790

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UBQ/UBQ_Other

   S: 1    vqvtvksldgs.eltlk....v...npsdtVaeLKekiekklgippeqqrLiykGkiLeddktLadyglkdgstihllekksgg 76
           ++v+v++++++ e++l+    v   + +d+V+++K ki++++g+p+ +q+L+y+G+ ++d ++La+y++ +g +ihl +k++gg
   Q: 707  IKVQVPNMQDKtEWKLNgqvlVftlPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIHLALKERGG 790
           6899*************996516658888**************************************************99875 PP

Organism

Sus scrofa

Protein Sequence
(Fasta)

MPAGPVQAVP PPPPAATEPK QPTEEEASSK EDSTPSKPVV GIIYPPPEVR NIVDKTASFV 60
ARNGPEFEAR IRQNEINNPK FNFLNPNDPY HAYYRHKVSE FKEGKAQEPS AAIPKVMQQQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGGGAATGTA AAACGTCTCA CCAGTCTCTG GAGTCGCAGC CTCAGCCCGT GTCTGCTCCG 60
CTCATGGAAC TGCCCCCCCG GAGCGACTGT AGCTTGTGGG AGCCTCAGCA AACCCTAGCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR022030--SF3A1
IPR000061--Surp
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom

PROSITE

PS50128--SURP
PS50053--UBIQUITIN_2

Pfam

PF12230--PRP21_like_P
PF01805--Surp
PF00240--ubiquitin

SMART

SM00648--SWAP
SM00213--UBQ

Gene Ontology

GO:0071013--C:catalytic step 2 spliceosome
GO:0005686--C:U2 snRNP
GO:0071004--C:U2-type prespliceosome
GO:0003723--F:RNA binding
GO:0000389--P:mRNA 3'-splice site recognition
GO:0000381--P:regulation of alternative mRNA splicing, via spliceosome

KEGG

ssc:100154850

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000319	Aegilops tauschii	35.37	8.00e-49	188.00
IUUC-Aml-002416	Ailuropoda melanoleuca	99.35	0.00e+00	1143.00
IUUC-Atr-003001	Amborella trichopoda	48.57	5.00e-65	242.00
IUUC-Apl-003584	Anas platyrhynchos	92.34	0.00e+00	949.00
IUUC-Aca-004690	Anolis carolinensis	85.96	0.00e+00	1027.00
IUUC-Acl-008320	Aspergillus clavatus	42.86	1.00e-47	184.00
IUUC-Ani-009307	Aspergillus nidulans	43.38	9.00e-53	201.00
IUUC-Ate-010515	Aspergillus terreus	46.03	3.00e-58	219.00
IUUC-Ame-011842	Astyanax mexicanus	79.15	0.00e+00	1008.00
IUUC-Bgr-012204	Blumeria graminis	35.44	3.00e-67	248.00
IUUC-Bta-013525	Bos taurus	99.61	0.00e+00	1138.00
IUUC-Bci-013842	Botrytis cinerea	46.43	2.00e-50	193.00
IUUC-Bol-015903	Brassica oleracea	38.01	3.00e-71	263.00
IUUC-Cja-018989	Callithrix jacchus	99.22	0.00e+00	1127.00
IUUC-Cfa-020629	Canis familiaris	99.35	0.00e+00	1134.00
IUUC-Cpo-021759	Cavia porcellus	99.22	0.00e+00	1125.00
IUUC-Csa-023750	Chlorocebus sabaeus	99.09	0.00e+00	1129.00
IUUC-Cin-025640	Ciona intestinalis	57.28	3.00e-147	515.00
IUUC-Csv-025855	Ciona savignyi	55.56	5.00e-142	498.00
IUUC-Dre-028055	Danio rerio	81.14	0.00e+00	975.00
IUUC-Dno-029259	Dasypus novemcinctus	98.96	0.00e+00	1137.00
IUUC-Dor-031081	Dipodomys ordii	98.70	0.00e+00	1131.00
IUUC-Dme-031975	Drosophila melanogaster	61.09	5.00e-149	521.00
IUUC-Ete-033177	Echinops telfairi	95.96	0.00e+00	899.00
IUUC-Eca-033670	Equus caballus	99.61	0.00e+00	1144.00
IUUC-Eeu-035100	Erinaceus europaeus	93.37	0.00e+00	701.00
IUUC-Fca-036176	Felis catus	99.35	0.00e+00	1135.00
IUUC-Fal-036776	Ficedula albicollis	91.25	0.00e+00	936.00
IUUC-Fso-038313	Fusarium solani	42.39	6.00e-45	175.00
IUUC-Gmo-038887	Gadus morhua	79.62	0.00e+00	1001.00
IUUC-Gga-041184	Gallus gallus	91.79	0.00e+00	923.00
IUUC-Gac-042118	Gasterosteus aculeatus	83.64	0.00e+00	987.00
IUUC-Gma-042726	Glycine max	39.14	7.00e-82	298.00
IUUC-Ggo-045641	Gorilla gorilla	96.08	0.00e+00	1114.00
IUUC-Hsa-045751	Homo sapiens	98.96	0.00e+00	1120.00
IUUC-Hvu-047702	Hordeum vulgare	32.25	6.00e-31	128.00
IUUC-Itr-047960	Ictidomys tridecemlineatus	99.35	0.00e+00	1142.00
IUUC-Lch-050152	Latimeria chalumnae	85.66	0.00e+00	919.00
IUUC-Lpe-051570	Leersia perrieri	45.78	8.00e-33	135.00
IUUC-Loc-051753	Lepisosteus oculatus	84.29	0.00e+00	1035.00
IUUC-Laf-053643	Loxodonta africana	99.09	0.00e+00	1099.00
IUUC-Mcc-055091	Macaca mulatta	98.96	0.00e+00	1129.00
IUUC-Meu-056036	Macropus eugenii	86.96	0.00e+00	800.00
IUUC-Mpo-057385	Magnaporthe poae	30.00	7.00e-13	67.40
IUUC-Mla-059020	Melampsora laricipopulina	31.65	7.00e-65	242.00
IUUC-Mga-060176	Meleagris gallopavo	92.33	0.00e+00	952.00
IUUC-Mvi-060278	Microbotryum violaceum	33.27	4.00e-74	272.00
IUUC-Mmr-061602	Microcebus murinus	98.96	0.00e+00	1152.00
IUUC-Mdo-062047	Monodelphis domestica	97.14	0.00e+00	1068.00
IUUC-Mmu-063377	Mus musculus	96.91	0.00e+00	1125.00
IUUC-Mac-065644	Musa acuminata	46.52	1.00e-60	227.00
IUUC-Mpu-066047	Mustela putorius furo	99.48	0.00e+00	1143.00
IUUC-Mlu-067039	Myotis lucifugus	99.35	0.00e+00	1111.00
IUUC-Nle-069540	Nomascus leucogenys	99.09	0.00e+00	1129.00
IUUC-Opr-071157	Ochotona princeps	98.70	0.00e+00	1113.00
IUUC-Ont-072229	Oreochromis niloticus	83.85	0.00e+00	993.00
IUUC-Oan-073616	Ornithorhynchus anatinus	98.23	3.00e-33	134.00
IUUC-Ocu-074002	Oryctolagus cuniculus	99.35	0.00e+00	1137.00
IUUC-Oba-075659	Oryza barthii	34.63	1.00e-34	140.00
IUUC-Ogu-078515	Oryza glumaepatula	38.28	2.00e-53	204.00
IUUC-Oin-080201	Oryza indica	46.88	2.00e-33	137.00
IUUC-Olo-080751	Oryza longistaminata	34.63	1.00e-34	140.00
IUUC-Ome-081201	Oryza meridionalis	37.09	1.00e-74	274.00
IUUC-Opu-083560	Oryza punctata	35.33	4.00e-64	239.00
IUUC-Ola-086705	Oryzias latipes	79.35	0.00e+00	966.00
IUUC-Olu-087794	Ostreococcus lucimarinus	34.98	9.00e-57	214.00
IUUC-Oga-088896	Otolemur garnettii	99.09	0.00e+00	1132.00
IUUC-Oar-090155	Ovis aries	95.04	0.00e+00	1103.00
IUUC-Ptr-090754	Pan troglodytes	98.83	0.00e+00	1117.00
IUUC-Pan-092464	Papio anubis	99.09	0.00e+00	1129.00
IUUC-Psi-093166	Pelodiscus sinensis	92.94	0.00e+00	742.00
IUUC-Ppa-095510	Physcomitrella patens	47.62	7.00e-57	215.00
IUUC-Pfo-096212	Poecilia formosa	76.33	0.00e+00	808.00
IUUC-Pab-098482	Pongo abelii	99.09	0.00e+00	1129.00
IUUC-Pop-099479	Populus trichocarpa	44.37	5.00e-56	212.00
IUUC-Pca-100776	Procavia capensis	99.01	9.00e-79	288.00
IUUC-Ppe-101626	Prunus persica	37.27	2.00e-78	286.00
IUUC-Pva-102981	Pteropus vampyrus	98.39	0.00e+00	1068.00
IUUC-Pgr-103503	Puccinia graminis	33.68	4.00e-69	256.00
IUUC-Ptt-103994	Puccinia triticina	31.94	1.00e-61	231.00
IUUC-Rno-105225	Rattus norvegicus	97.02	0.00e+00	1119.00
IUUC-Sce-106278	Saccharomyces cerevisiae	23.28	4.00e-11	61.60
IUUC-Sha-107353	Sarcophilus harrisii	94.76	0.00e+00	1011.00
IUUC-Sja-107876	Schizosaccharomyces japonicus	35.56	4.00e-61	228.00
IUUC-Ssl-108518	Sclerotinia sclerotiorum	45.74	3.00e-54	206.00
IUUC-Sit-110019	Setaria italica	35.15	6.00e-52	198.00
IUUC-Stu-112703	Solanum tuberosum	46.35	5.00e-64	239.00
IUUC-Sar-113166	Sorex araneus	95.73	0.00e+00	1050.00
IUUC-Tgu-117284	Taeniopygia guttata	92.22	0.00e+00	943.00
IUUC-Tru-118236	Takifugu rubripes	78.28	0.00e+00	920.00
IUUC-Tsy-119219	Tarsius syrichta	96.35	0.00e+00	1019.00
IUUC-Tni-119929	Tetraodon nigroviridis	82.90	4.00e-101	362.00
IUUC-Tca-121156	Theobroma cacao	44.26	5.00e-61	229.00
IUUC-Tre-122179	Trichoderma reesei	42.24	1.00e-44	174.00
IUUC-Tvi-122326	Trichoderma virens	40.85	1.00e-47	183.00
IUUC-Tae-124313	Triticum aestivum	37.22	4.00e-70	259.00
IUUC-Tur-126352	Triticum urartu	34.97	3.00e-49	189.00
IUUC-Tbe-127271	Tupaia belangeri	91.57	0.00e+00	989.00
IUUC-Ttr-128433	Tursiops truncatus	97.39	0.00e+00	1130.00
IUUC-Xtr-132013	Xenopus tropicalis	86.09	0.00e+00	1004.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence