iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
microRNA	TRANSFAC	RAID2
Post-translational Modifications (PTMs)
CPLM	dbPAF
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/UBA	1.60e-16	60.3	431	466

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 5    dkleqlveMGFdreealqaLraannnleaAveyLld 40
           + ++ l+ MG+++++a+qaL +a +nl+ A+  Ll+
   Q: 431  ESVNTLRGMGYSTQAAKQALHQARGNLDDALKILLS 466
           6799******************************97 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MAQKKYLQAK LTQFLREDRI QLWKPPYTEE NKEVGLALKD LAKRYSERLE CCENEVENII 60
EEIRCKAIER GTGNEHYRTT GIATIEVFLP PRLRKDKKSL LETRLHVTGR DLRSKIAETF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCGCAGA AGAAATATCT TCAAGCAAAA CTGACCCAGT TTCTAAGGGA AGACAGAATT 60
CAACTTTGGA AACCTCCATA TACTGAAGAA AATAAAGAAG TTGGTTTGGC CTTAAAGGTA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR011990--TPR-like_helical_dom
IPR015940--UBA
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom

PROSITE

PS50030--UBA

Pfam

PF00627--UBA

SMART

SM00165--UBA

Gene Ontology

GO:0005829--C:cytosol
GO:0005730--C:nucleolus

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000706	Aegilops tauschii	31.15	2.00e-21	97.10
IUUC-Aml-002011	Ailuropoda melanoleuca	90.55	0.00e+00	1008.00
IUUC-Atr-002685	Amborella trichopoda	25.44	1.00e-24	107.00
IUUC-Apl-003818	Anas platyrhynchos	63.24	2.00e-179	622.00
IUUC-Aca-004439	Anolis carolinensis	63.86	0.00e+00	661.00
IUUC-Aly-005796	Arabidopsis lyrata	24.71	2.00e-25	110.00
IUUC-Ath-007419	Arabidopsis thaliana	24.11	4.00e-24	105.00
IUUC-Ani-009253	Aspergillus nidulans	26.88	4.00e-02	32.70
IUUC-Ame-011290	Astyanax mexicanus	44.03	7.00e-108	384.00
IUUC-Bta-013446	Bos taurus	85.67	0.00e+00	949.00
IUUC-Bdi-014400	Brachypodium distachyon	31.09	6.00e-24	105.00
IUUC-Bol-015407	Brassica oleracea	24.74	1.00e-23	104.00
IUUC-Bra-017386	Brassica rapa	25.31	2.00e-21	97.10
IUUC-Cja-018982	Callithrix jacchus	85.04	0.00e+00	887.00
IUUC-Cfa-020919	Canis familiaris	90.55	0.00e+00	1012.00
IUUC-Cpo-021709	Cavia porcellus	86.09	0.00e+00	972.00
IUUC-Csa-023986	Chlorocebus sabaeus	87.32	0.00e+00	946.00
IUUC-Cho-024391	Choloepus hoffmanni	94.77	2.00e-94	338.00
IUUC-Cin-025227	Ciona intestinalis	34.05	7.00e-68	251.00
IUUC-Csv-026213	Ciona savignyi	27.31	1.00e-11	63.20
IUUC-Dre-028258	Danio rerio	38.76	3.00e-89	322.00
IUUC-Dno-029732	Dasypus novemcinctus	89.25	0.00e+00	967.00
IUUC-Dor-030896	Dipodomys ordii	88.80	3.00e-180	625.00
IUUC-Dme-031789	Drosophila melanogaster	27.74	5.00e-42	166.00
IUUC-Ete-032810	Echinops telfairi	78.86	0.00e+00	811.00
IUUC-Eca-033649	Equus caballus	86.81	0.00e+00	973.00
IUUC-Fca-035979	Felis catus	89.54	0.00e+00	1001.00
IUUC-Fal-036708	Ficedula albicollis	62.40	0.00e+00	637.00
IUUC-Gmo-039174	Gadus morhua	40.04	3.00e-73	269.00
IUUC-Gga-040165	Gallus gallus	63.77	0.00e+00	646.00
IUUC-Gac-042269	Gasterosteus aculeatus	40.40	9.00e-87	314.00
IUUC-Gma-043420	Glycine max	26.53	2.00e-23	103.00
IUUC-Ggo-045525	Gorilla gorilla	86.99	0.00e+00	951.00
IUUC-Hsa-046456	Homo sapiens	87.15	0.00e+00	953.00
IUUC-Hvu-047099	Hordeum vulgare	31.15	6.00e-22	98.20
IUUC-Itr-048763	Ictidomys tridecemlineatus	90.08	0.00e+00	986.00
IUUC-Lch-049579	Latimeria chalumnae	46.11	2.00e-121	429.00
IUUC-Lpe-051485	Leersia perrieri	30.19	1.00e-24	107.00
IUUC-Loc-051974	Lepisosteus oculatus	43.60	5.00e-111	395.00
IUUC-Laf-053661	Loxodonta africana	88.13	0.00e+00	971.00
IUUC-Mcc-054599	Macaca mulatta	87.64	0.00e+00	952.00
IUUC-Meu-055935	Macropus eugenii	76.18	0.00e+00	832.00
IUUC-Mtr-058497	Medicago truncatula	28.06	9.00e-25	108.00
IUUC-Mga-059711	Meleagris gallopavo	62.87	0.00e+00	628.00
IUUC-Mmr-061079	Microcebus murinus	89.09	0.00e+00	985.00
IUUC-Mdo-062991	Monodelphis domestica	81.57	0.00e+00	868.00
IUUC-Mmu-064280	Mus musculus	95.11	0.00e+00	1022.00
IUUC-Mac-064485	Musa acuminata	27.07	4.00e-25	109.00
IUUC-Mpu-066376	Mustela putorius furo	89.41	0.00e+00	999.00
IUUC-Mlu-067808	Myotis lucifugus	88.11	0.00e+00	1011.00
IUUC-Nle-069384	Nomascus leucogenys	87.64	0.00e+00	951.00
IUUC-Opr-071209	Ochotona princeps	84.34	3.00e-120	426.00
IUUC-Ont-071237	Oreochromis niloticus	43.26	3.00e-97	348.00
IUUC-Oan-073241	Ornithorhynchus anatinus	72.48	0.00e+00	771.00
IUUC-Ocu-074372	Oryctolagus cuniculus	87.79	0.00e+00	938.00
IUUC-Oba-075604	Oryza barthii	30.58	4.00e-24	106.00
IUUC-Obr-076272	Oryza brachyantha	30.47	5.00e-26	112.00
IUUC-Ogl-077860	Oryza glaberrima	30.58	4.00e-24	106.00
IUUC-Ogu-078907	Oryza glumaepatula	30.58	4.00e-24	106.00
IUUC-Oin-079073	Oryza indica	30.58	4.00e-24	106.00
IUUC-Olo-080884	Oryza longistaminata	30.58	3.00e-24	106.00
IUUC-Ome-081393	Oryza meridionalis	30.10	6.00e-24	105.00
IUUC-Oni-082606	Oryza nivara	30.58	3.00e-24	106.00
IUUC-Opu-083514	Oryza punctata	28.62	3.00e-24	106.00
IUUC-Oru-084709	Oryza rufipogon	31.07	9.00e-25	108.00
IUUC-Ola-086447	Oryzias latipes	43.37	2.00e-93	336.00
IUUC-Olu-087599	Ostreococcus lucimarinus	33.33	3.60e-02	32.30
IUUC-Oga-087931	Otolemur garnettii	89.09	0.00e+00	976.00
IUUC-Oar-090452	Ovis aries	85.50	0.00e+00	966.00
IUUC-Ptr-091538	Pan troglodytes	85.69	0.00e+00	926.00
IUUC-Pan-092411	Papio anubis	88.33	0.00e+00	931.00
IUUC-Psi-093867	Pelodiscus sinensis	62.58	9.00e-167	580.00
IUUC-Pma-094370	Petromyzon marinus	41.14	6.00e-93	335.00
IUUC-Ppa-096000	Physcomitrella patens	27.44	2.00e-33	137.00
IUUC-Pfo-097368	Poecilia formosa	42.88	4.00e-99	355.00
IUUC-Pab-097956	Pongo abelii	88.33	0.00e+00	936.00
IUUC-Pop-099788	Populus trichocarpa	23.55	1.00e-23	104.00
IUUC-Pca-100209	Procavia capensis	78.87	2.00e-97	349.00
IUUC-Ppe-101943	Prunus persica	27.80	6.00e-19	89.00
IUUC-Pva-102894	Pteropus vampyrus	79.51	0.00e+00	856.00
IUUC-Sha-106803	Sarcophilus harrisii	77.56	6.00e-112	396.00
IUUC-Smo-109087	Selaginella moellendorffii	29.05	1.00e-31	130.00
IUUC-Sit-110238	Setaria italica	34.12	3.00e-19	90.10
IUUC-Sly-111808	Solanum lycopersicum	29.36	3.00e-28	119.00
IUUC-Stu-112555	Solanum tuberosum	25.91	2.00e-24	107.00
IUUC-Sar-113510	Sorex araneus	74.05	1.00e-110	393.00
IUUC-Sbi-113830	Sorghum bicolor	32.62	3.00e-24	106.00
IUUC-Ssc-116283	Sus scrofa	86.51	0.00e+00	859.00
IUUC-Tgu-116651	Taeniopygia guttata	61.97	0.00e+00	635.00
IUUC-Tru-118492	Takifugu rubripes	42.86	7.00e-99	354.00
IUUC-Tsy-119635	Tarsius syrichta	81.30	0.00e+00	859.00
IUUC-Tni-120691	Tetraodon nigroviridis	41.90	3.00e-98	352.00
IUUC-Tca-121143	Theobroma cacao	25.64	4.00e-27	115.00
IUUC-Tae-123939	Triticum aestivum	31.15	8.00e-22	99.00
IUUC-Tbe-127414	Tupaia belangeri	84.72	0.00e+00	924.00
IUUC-Ttr-128330	Tursiops truncatus	80.56	0.00e+00	801.00
IUUC-Vpa-130210	Vicugna pacos	79.68	0.00e+00	746.00
IUUC-Vvi-131180	Vitis vinifera	24.43	5.00e-20	92.40
IUUC-Xtr-132695	Xenopus tropicalis	57.19	8.00e-169	587.00
IUUC-Xma-134255	Xiphophorus maculatus	43.05	7.00e-101	361.00
IUUC-Zma-135571	Zea mays	33.16	2.00e-25	110.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence