iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bol-015242

Ensembl Protein ID

Bo3g004910.1

UniProt Accession

A0A0D3B0A6; A0A0D3B0A6_BRAOL

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Bo3g004910	Bo3g004910.1	Bo3g004910.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.00e-37	125.8	141	179
UBD/Beta-Prp	3.40e-59	202.0	14	255

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gHt +v+ l+f +d + +vsG+ D+ +kvWDl+ g+ll+
   Q: 141  GHTRGVNVLRFtPDgRWVVSGGEDNIVKVWDLTAGKLLH 179
           8***********99999******************9987 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfs 103
           +h++ ++c+k+  ++++ l+tg++d+++ +w + +++++ sl+gh+++v +v+f+ ++ + + g+  +tik+wdl+  k+v+tl+gh ++  s++f+
   Q: 14   AHSAAVNCLKIgRKSSRKLVTGGEDHKVNLWAIGKPNAILSLQGHSSGVDSVTFDASEGLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVNFH 110
           7899999****9999********************************************************************************** PP
   S: 104  psgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsl 200
           p g++++sGs+d  +++wd++++ c++ t +gh++ vn++++ pdg+ +vsG+ D++v++Wdl  gkll+++++ h+++++sl+f++  + l++gs 
   Q: 111  PFGEFFASGSRDTNLKIWDIRKKGCIH-TYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLHEFKS-HEGQIQSLDFHPHEFLLATGSA 205
           ***************************.*********************************************9.********************** PP
   S: 201  dgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiri..W 249
           d+tvk+wdl+t e + +    t+ v+++ f p+++ +++g  ++s++i  W
   Q: 206  DKTVKFWDLETFELIGSGGTETTGVRCLTFNPDGKSVLCGL-HESLKIfsW 255
           ************************************99995.667776234 PP

Organism

Brassica oleracea

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MTTKRAYKLQ EFVAHSAAVN CLKIGRKSSR KLVTGGEDHK VNLWAIGKPN AILSLQGHSS 60
GVDSVTFDAS EGLVAAGAAS GTIKLWDLEE AKIVRTLTGH RSNCISVNFH PFGEFFASGS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGACCACCA AGCGCGCTTA CAAGCTCCGT ATCCTTCTTT GTGTTTCTTT AATTACTCAA 60
TTTTAGAAGC TTCTTTGTGT TGTGAATCAT TTGATTAACT AAAGTGCCTT GCTTGATCTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002187	Ailuropoda melanoleuca	49.83	2.00e-96	346.00
IUUC-Apl-003305	Anas platyrhynchos	50.17	6.00e-98	351.00
IUUC-Aca-004635	Anolis carolinensis	48.55	2.00e-89	322.00
IUUC-Aly-006226	Arabidopsis lyrata	84.66	0.00e+00	1338.00
IUUC-Ath-007323	Arabidopsis thaliana	85.12	0.00e+00	1379.00
IUUC-Bta-012527	Bos taurus	50.50	2.00e-99	356.00
IUUC-Bra-017390	Brassica rapa	92.92	0.00e+00	1483.00
IUUC-Cja-019706	Callithrix jacchus	50.50	7.00e-99	354.00
IUUC-Cpo-021710	Cavia porcellus	50.17	3.00e-99	355.00
IUUC-Csa-023546	Chlorocebus sabaeus	50.52	7.00e-96	344.00
IUUC-Csv-025962	Ciona savignyi	46.74	6.00e-82	296.00
IUUC-Dre-028215	Danio rerio	49.84	3.00e-98	352.00
IUUC-Dno-029314	Dasypus novemcinctus	50.83	4.00e-99	355.00
IUUC-Dor-030482	Dipodomys ordii	50.50	7.00e-100	357.00
IUUC-Dme-032188	Drosophila melanogaster	37.09	1.00e-55	211.00
IUUC-Eca-034143	Equus caballus	50.17	2.00e-96	346.00
IUUC-Fca-035924	Felis catus	50.83	1.00e-99	357.00
IUUC-Fal-037387	Ficedula albicollis	51.50	5.00e-102	364.00
IUUC-Gmo-038692	Gadus morhua	49.84	3.00e-100	358.00
IUUC-Gga-040597	Gallus gallus	50.17	6.00e-100	358.00
IUUC-Gac-042004	Gasterosteus aculeatus	49.23	2.00e-96	346.00
IUUC-Ggo-044761	Gorilla gorilla	50.50	5.00e-99	355.00
IUUC-Hsa-045698	Homo sapiens	50.50	3.00e-99	355.00
IUUC-Itr-048697	Ictidomys tridecemlineatus	50.50	1.00e-99	357.00
IUUC-Laf-054587	Loxodonta africana	50.50	1.00e-99	357.00
IUUC-Mcc-055851	Macaca mulatta	50.50	5.00e-99	355.00
IUUC-Meu-056704	Macropus eugenii	51.50	2.00e-100	359.00
IUUC-Mmr-061154	Microcebus murinus	50.50	3.00e-99	355.00
IUUC-Mdo-062365	Monodelphis domestica	49.84	1.00e-99	357.00
IUUC-Mmu-063754	Mus musculus	50.00	1.00e-99	357.00
IUUC-Mpu-066245	Mustela putorius furo	51.16	7.00e-100	357.00
IUUC-Mlu-067692	Myotis lucifugus	49.36	1.00e-98	353.00
IUUC-Nle-070051	Nomascus leucogenys	50.17	4.00e-98	352.00
IUUC-Opr-070855	Ochotona princeps	50.50	2.00e-99	356.00
IUUC-Ont-071883	Oreochromis niloticus	50.48	3.00e-99	355.00
IUUC-Oan-073293	Ornithorhynchus anatinus	51.59	1.00e-96	347.00
IUUC-Ocu-074644	Oryctolagus cuniculus	50.50	1.00e-99	357.00
IUUC-Ogu-079022	Oryza glumaepatula	70.59	7.00e-147	514.00
IUUC-Osa-086267	Oryza sativa	71.21	8.00e-148	517.00
IUUC-Oga-087964	Otolemur garnettii	50.50	2.00e-99	356.00
IUUC-Oar-089483	Ovis aries	50.17	2.00e-97	350.00
IUUC-Ptr-091387	Pan troglodytes	50.50	3.00e-99	355.00
IUUC-Pan-092623	Papio anubis	50.50	5.00e-99	355.00
IUUC-Psi-093830	Pelodiscus sinensis	50.88	5.00e-95	342.00
IUUC-Pab-097564	Pongo abelii	50.50	1.00e-98	353.00
IUUC-Pca-100357	Procavia capensis	55.83	7.00e-74	271.00
IUUC-Pva-102397	Pteropus vampyrus	46.51	3.00e-87	315.00
IUUC-Rno-105349	Rattus norvegicus	50.00	8.00e-100	357.00
IUUC-Sar-112953	Sorex araneus	43.42	3.00e-55	209.00
IUUC-Tgu-117461	Taeniopygia guttata	51.50	1.00e-102	367.00
IUUC-Tru-117865	Takifugu rubripes	46.75	1.00e-92	333.00
IUUC-Tsy-119036	Tarsius syrichta	56.91	9.00e-39	154.00
IUUC-Ttr-128172	Tursiops truncatus	50.50	1.00e-99	357.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence