iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ome-081239

Ensembl Protein ID

OMERI04G25090.1

UniProt Accession

A0A0E0DK62; A0A0E0DK62_9ORYZ

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
OMERI04G25090	OMERI04G25090.1	OMERI04G25090.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	8.30e-37	124.6	136	174
UBD/Beta-Prp	9.50e-58	196.7	9	271

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gHt +v++++f +d + +vsG+ D+++k+WDl+ g+ll+
   Q: 136  GHTRGVNAIRFtPDgRWVVSGGEDNVVKLWDLTAGKLLH 174
           8***********99999******************9986 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlsl 100
           +h+s ++c+k+  + +++l+tg++d+++ +w + +++ + slsgh+++v +v+f++++ + + g+  +tik+wdl+  k+v+tl+gh ++ +s+
   Q: 9    AHSSNVNCLKIgRKTSRVLVTGGDDHKVNLWAIGKPNSILSLSGHTSAVESVNFDSTEVFVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCMSV 102
           7899999****999********************************************9999******************************** PP
   S: 101  sfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngke 194
           +f+p g++++sGs d  +++wd++ + c++ t +gh++ vn +++ pdg+ +vsG+ D++v+lWdl  gkll++++  h++++++++f++  + 
   Q: 103  DFHPFGEFFASGSLDTNLKIWDIRRKGCIH-TYKGHTRGVNAIRFTPDGRWVVSGGEDNVVKLWDLTAGKLLHDFKC-HEGQIQCIDFHPHEFL 194
           ******************************.********************************************98.**************** PP
   S: 195  lvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvav 272
           l++gs d+tvk+wdl+t e + +    t+ v+s+ f p++  l++g  ++s++++  +   +  t+    s+++   v
   Q: 195  LATGSSDKTVKFWDLETFELIGSTGPETTGVRSMTFNPDGRSLLCG-LHESLKVFSWEPIRCHDTVDVGWSRLSDLNV 271
           *************************************999999999.5788888666666666666555555555544 PP

Organism

Oryza meridionalis

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MLLLVEFVAH SSNVNCLKIG RKTSRVLVTG GDDHKVNLWA IGKPNSILSL SGHTSAVESV 60
NFDSTEVFVA AGAASGTIKL WDLEEAKIVR TLTGHRSNCM SVDFHPFGEF FASGSLDTNL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCTGCTGC TGGTGGTGCA TGAAAGAAAC CATCAAACTG TTTGGATTTA AAACTGAGAT 60
TTTAAAACTT TTGTTCGCGA ACCAACTGAG AAGTGGACAA GATCCATCCG GGCTTGCATT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000954	Aegilops tauschii	60.62	0.00e+00	1055.00
IUUC-Aml-002187	Ailuropoda melanoleuca	53.58	3.00e-100	358.00
IUUC-Atr-002899	Amborella trichopoda	68.40	0.00e+00	639.00
IUUC-Apl-003305	Anas platyrhynchos	52.92	1.00e-101	363.00
IUUC-Aca-004635	Anolis carolinensis	51.27	7.00e-90	324.00
IUUC-Aly-005711	Arabidopsis lyrata	79.15	6.00e-168	583.00
IUUC-Ath-007606	Arabidopsis thaliana	79.15	1.00e-167	582.00
IUUC-Acl-008307	Aspergillus clavatus	32.82	1.00e-30	126.00
IUUC-Bgr-012225	Blumeria graminis	30.87	1.00e-28	120.00
IUUC-Bta-012527	Bos taurus	54.27	4.00e-103	368.00
IUUC-Bdi-014652	Brachypodium distachyon	77.96	0.00e+00	1410.00
IUUC-Bol-016374	Brassica oleracea	79.20	2.00e-166	578.00
IUUC-Bra-017068	Brassica rapa	78.55	3.00e-167	581.00
IUUC-Cja-019706	Callithrix jacchus	54.27	1.00e-102	366.00
IUUC-Cfa-020139	Canis familiaris	46.13	6.00e-96	344.00
IUUC-Cpo-021710	Cavia porcellus	54.61	5.00e-104	370.00
IUUC-Cre-022746	Chlamydomonas reinhardtii	46.03	7.00e-85	307.00
IUUC-Csa-023546	Chlorocebus sabaeus	54.06	4.00e-99	354.00
IUUC-Cin-025156	Ciona intestinalis	46.39	3.00e-85	308.00
IUUC-Csv-025962	Ciona savignyi	49.30	3.00e-85	307.00
IUUC-Dre-028215	Danio rerio	52.38	2.00e-100	359.00
IUUC-Dno-029314	Dasypus novemcinctus	54.61	8.00e-103	367.00
IUUC-Dor-030482	Dipodomys ordii	54.27	1.00e-103	369.00
IUUC-Dme-032188	Drosophila melanogaster	37.67	2.00e-56	213.00
IUUC-Eca-034143	Equus caballus	53.92	2.00e-100	358.00
IUUC-Fca-035924	Felis catus	54.61	2.00e-103	369.00
IUUC-Fal-037387	Ficedula albicollis	53.58	1.00e-102	366.00
IUUC-Gmo-038692	Gadus morhua	52.38	2.00e-100	358.00
IUUC-Gga-040597	Gallus gallus	53.24	2.00e-102	365.00
IUUC-Gac-042004	Gasterosteus aculeatus	50.62	2.00e-97	348.00
IUUC-Gma-044134	Glycine max	65.41	5.00e-177	613.00
IUUC-Ggo-044761	Gorilla gorilla	54.27	1.00e-102	366.00
IUUC-Hsa-045698	Homo sapiens	51.08	3.00e-103	368.00
IUUC-Hvu-047649	Hordeum vulgare	76.82	0.00e+00	1392.00
IUUC-Itr-048697	Ictidomys tridecemlineatus	54.27	2.00e-103	369.00
IUUC-Lch-049674	Latimeria chalumnae	53.40	9.00e-105	373.00
IUUC-Lpe-051554	Leersia perrieri	86.44	0.00e+00	1609.00
IUUC-Loc-052623	Lepisosteus oculatus	53.45	1.00e-97	349.00
IUUC-Laf-054587	Loxodonta africana	54.27	3.00e-103	368.00
IUUC-Mcc-055851	Macaca mulatta	54.27	1.00e-102	366.00
IUUC-Meu-056704	Macropus eugenii	54.27	7.00e-103	367.00
IUUC-Mtr-058053	Medicago truncatula	70.76	0.00e+00	628.00
IUUC-Mga-059608	Meleagris gallopavo	52.72	7.00e-102	363.00
IUUC-Mmr-061154	Microcebus murinus	54.27	6.00e-103	367.00
IUUC-Mdo-062365	Monodelphis domestica	54.61	8.00e-103	367.00
IUUC-Mmu-063754	Mus musculus	53.80	1.00e-103	370.00
IUUC-Mac-064439	Musa acuminata	71.16	0.00e+00	642.00
IUUC-Mpu-066245	Mustela putorius furo	54.95	1.00e-103	369.00
IUUC-Mlu-067692	Myotis lucifugus	53.80	5.00e-103	367.00
IUUC-Nle-070051	Nomascus leucogenys	53.92	8.00e-102	363.00
IUUC-Opr-070855	Ochotona princeps	53.24	6.00e-102	363.00
IUUC-Ont-071883	Oreochromis niloticus	51.36	3.00e-96	345.00
IUUC-Oan-073293	Ornithorhynchus anatinus	54.55	3.00e-99	355.00
IUUC-Ocu-074644	Oryctolagus cuniculus	54.27	1.00e-103	369.00
IUUC-Oba-075448	Oryza barthii	95.40	0.00e+00	1659.00
IUUC-Obr-076385	Oryza brachyantha	90.52	0.00e+00	1634.00
IUUC-Ogl-077427	Oryza glaberrima	95.26	0.00e+00	1720.00
IUUC-Ogu-078428	Oryza glumaepatula	94.97	0.00e+00	1468.00
IUUC-Oin-079811	Oryza indica	94.84	0.00e+00	1717.00
IUUC-Olo-080245	Oryza longistaminata	90.66	0.00e+00	1609.00
IUUC-Oni-082640	Oryza nivara	95.40	0.00e+00	1659.00
IUUC-Opu-083748	Oryza punctata	95.40	0.00e+00	1689.00
IUUC-Oru-084609	Oryza rufipogon	95.40	0.00e+00	1659.00
IUUC-Osa-085988	Oryza sativa	89.98	0.00e+00	1590.00
IUUC-Ola-087483	Oryzias latipes	49.66	9.00e-93	333.00
IUUC-Oga-087964	Otolemur garnettii	54.27	4.00e-103	368.00
IUUC-Oar-089483	Ovis aries	53.92	3.00e-101	362.00
IUUC-Ptr-091387	Pan troglodytes	51.08	2.00e-103	369.00
IUUC-Pan-092623	Papio anubis	54.27	1.00e-102	366.00
IUUC-Psi-093830	Pelodiscus sinensis	53.82	2.00e-97	348.00
IUUC-Ppa-095379	Physcomitrella patens	83.50	6.00e-157	547.00
IUUC-Pfo-096755	Poecilia formosa	48.17	1.00e-96	346.00
IUUC-Pab-097564	Pongo abelii	54.27	3.00e-102	365.00
IUUC-Pop-099149	Populus trichocarpa	69.68	0.00e+00	639.00
IUUC-Pca-100357	Procavia capensis	58.08	2.00e-74	273.00
IUUC-Ppe-101237	Prunus persica	71.37	0.00e+00	660.00
IUUC-Pva-102397	Pteropus vampyrus	49.83	3.00e-90	325.00
IUUC-Rno-105349	Rattus norvegicus	53.80	7.00e-104	370.00
IUUC-Smo-109379	Selaginella moellendorffii	80.20	3.00e-159	554.00
IUUC-Sit-110360	Setaria italica	78.04	0.00e+00	1408.00
IUUC-Sly-111307	Solanum lycopersicum	68.62	4.00e-180	624.00
IUUC-Stu-112462	Solanum tuberosum	67.71	9.00e-178	615.00
IUUC-Sar-112953	Sorex araneus	46.05	4.00e-58	218.00
IUUC-Ssc-115949	Sus scrofa	48.77	1.00e-49	190.00
IUUC-Tgu-117461	Taeniopygia guttata	53.58	3.00e-103	368.00
IUUC-Tru-117865	Takifugu rubripes	50.00	8.00e-91	327.00
IUUC-Tsy-119036	Tarsius syrichta	60.00	7.00e-39	154.00
IUUC-Tni-120903	Tetraodon nigroviridis	49.83	3.00e-89	322.00
IUUC-Tca-121185	Theobroma cacao	52.01	0.00e+00	873.00
IUUC-Tae-125307	Triticum aestivum	77.68	0.00e+00	1401.00
IUUC-Tur-126411	Triticum urartu	62.21	0.00e+00	1027.00
IUUC-Ttr-128172	Tursiops truncatus	54.27	2.00e-103	369.00
IUUC-Vvi-131489	Vitis vinifera	68.67	0.00e+00	640.00
IUUC-Xtr-132915	Xenopus tropicalis	52.70	2.00e-98	352.00
IUUC-Xma-134133	Xiphophorus maculatus	51.02	3.00e-94	338.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence