iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Smo-109409

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Genbank Nucleotide ID

GL377603

Gene Name

SELMODRAFT_443995

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
SELMODRAFT_443995	EFJ20167	EFJ20167

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.80e-37	126.4	144	182
UBD/Beta-Prp	3.60e-57	194.5	17	252

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gHt +v c++f +d + +vsG+ D+++k+WDl+ g+l++
   Q: 144  GHTRGVKCVKFsPDgRWIVSGGEDNVVKLWDLTAGKLIH 182
           8***********9999*******************9876 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgd 107
           +h s ++c+k+ ++++++l+tg++d+++  w + +++++ slsgh+++v +v f+  + + v g+  +tik+wdl+  k+v+tl+gh ++  s++f+p g+
   Q: 17   AHGSDVNCLKIgKKSSRVLVTGGEDHKVNMWAIGKPNAILSLSGHTSGVESVAFDAAEVLVVAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGE 117
           67788999***9**********************************************99999************************************** PP
   S: 108  klvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwd 208
           +++sGs d  +++wd++ + c++ t +gh++ v cv+++pdg+ +vsG+ D++v+lWdl  gkl+++++  h+ ++++l+f++  + l+sgs d+tvk++d
   Q: 118  FFASGSLDTNLKIWDIRRKGCIH-TYKGHTRGVKCVKFSPDGRWIVSGGEDNVVKLWDLTAGKLIHDFKY-HEAQIQCLDFHPHEFLLASGSADKTVKFYD 216
           ***********************.********************************************97.****************************** PP
   S: 209  lqtgecvrtlnghtdnvksvrfspnderlvsgssDg 244
           l+t e + +    t+ v+++ f p++  +vs+++++
   Q: 217  LETFELIGSSGPETSGVRVMGFNPDGRTIVSATQEN 252
           ********************************9765 PP

Organism

Selaginella moellendorffii

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MRLSMKRQIF GGEEFVAHGS DVNCLKIGKK SSRVLVTGGE DHKVNMWAIG KPNAILSLSG 60
HTSGVESVAF DAAEVLVVAG AASGTIKLWD LEEAKIVRTL TGHRSNCISV DFHPFGEFFA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCGGCTAT CGATGAAGCG GCAGATCTTC GGGGGAGGTA TGCTCTAGGA TGCTAGCGAG 60
ATACATTTCG ATGGGAGGAA GAAATCTCGG ACGGGGAGCC CTAAGATCAG TGGATTGAAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

KEGG

smo:SELMODRAFT_443995

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002187	Ailuropoda melanoleuca	48.70	4.00e-98	351.00
IUUC-Apl-003305	Anas platyrhynchos	53.38	7.00e-101	360.00
IUUC-Aca-004635	Anolis carolinensis	52.90	1.00e-88	320.00
IUUC-Aly-005711	Arabidopsis lyrata	61.79	1.00e-156	546.00
IUUC-Ath-007606	Arabidopsis thaliana	62.92	1.00e-157	549.00
IUUC-Bol-016374	Brassica oleracea	60.75	2.00e-156	545.00
IUUC-Bra-017068	Brassica rapa	61.96	2.00e-156	545.00
IUUC-Cfa-020139	Canis familiaris	46.13	2.00e-94	338.00
IUUC-Cpo-021710	Cavia porcellus	54.61	2.00e-102	365.00
IUUC-Cre-022746	Chlamydomonas reinhardtii	45.03	3.00e-80	292.00
IUUC-Csa-023546	Chlorocebus sabaeus	53.90	4.00e-97	348.00
IUUC-Dme-032188	Drosophila melanogaster	37.29	6.00e-55	208.00
IUUC-Eca-034143	Equus caballus	53.92	2.00e-98	352.00
IUUC-Fca-035924	Felis catus	49.28	2.00e-101	362.00
IUUC-Fal-037387	Ficedula albicollis	53.61	9.00e-100	357.00
IUUC-Gga-040597	Gallus gallus	52.22	3.00e-99	355.00
IUUC-Gma-044322	Glycine max	46.68	0.00e+00	658.00
IUUC-Ggo-044761	Gorilla gorilla	54.27	3.00e-101	362.00
IUUC-Hsa-045698	Homo sapiens	54.27	2.00e-101	362.00
IUUC-Lpe-051554	Leersia perrieri	72.78	3.00e-160	558.00
IUUC-Laf-054587	Loxodonta africana	54.27	9.00e-102	363.00
IUUC-Mcc-055851	Macaca mulatta	54.27	3.00e-101	362.00
IUUC-Meu-056704	Macropus eugenii	53.92	9.00e-101	360.00
IUUC-Mtr-058053	Medicago truncatula	46.93	0.00e+00	669.00
IUUC-Mga-059608	Meleagris gallopavo	51.97	4.00e-100	358.00
IUUC-Mmr-061154	Microcebus murinus	54.27	2.00e-101	362.00
IUUC-Mdo-062365	Monodelphis domestica	54.27	1.00e-100	360.00
IUUC-Mmu-063754	Mus musculus	54.27	9.00e-102	363.00
IUUC-Mpu-066245	Mustela putorius furo	54.27	1.00e-101	363.00
IUUC-Opr-070855	Ochotona princeps	53.92	4.00e-101	361.00
IUUC-Ont-071883	Oreochromis niloticus	52.23	5.00e-95	341.00
IUUC-Oan-073293	Ornithorhynchus anatinus	53.07	8.00e-98	350.00
IUUC-Oba-075448	Oryza barthii	79.08	3.00e-159	554.00
IUUC-Obr-076385	Oryza brachyantha	68.67	8.00e-162	563.00
IUUC-Ogl-077427	Oryza glaberrima	68.25	2.00e-161	562.00
IUUC-Oin-079811	Oryza indica	68.88	1.00e-161	563.00
IUUC-Oni-082640	Oryza nivara	79.08	3.00e-159	554.00
IUUC-Opu-083748	Oryza punctata	78.71	1.00e-160	559.00
IUUC-Oru-084609	Oryza rufipogon	79.08	3.00e-159	554.00
IUUC-Ptr-091387	Pan troglodytes	54.27	2.00e-101	362.00
IUUC-Pan-092623	Papio anubis	54.27	3.00e-101	362.00
IUUC-Pop-099149	Populus trichocarpa	67.79	1.00e-162	566.00
IUUC-Pca-100357	Procavia capensis	58.38	9.00e-75	273.00
IUUC-Ppe-101237	Prunus persica	67.53	6.00e-162	563.00
IUUC-Pva-102397	Pteropus vampyrus	50.51	1.00e-90	326.00
IUUC-Rno-105349	Rattus norvegicus	54.27	7.00e-102	363.00
IUUC-Sit-109837	Setaria italica	41.17	9.00e-165	573.00
IUUC-Sly-111307	Solanum lycopersicum	59.87	1.00e-157	549.00
IUUC-Sbi-114389	Sorghum bicolor	65.13	5.00e-130	457.00
IUUC-Ssc-115949	Sus scrofa	48.47	6.00e-48	184.00
IUUC-Tru-117865	Takifugu rubripes	50.17	1.00e-88	320.00
IUUC-Tca-121185	Theobroma cacao	55.45	2.00e-163	569.00
IUUC-Tme-127141	Tuber melanosporum	29.29	4.00e-30	125.00
IUUC-Ttr-128172	Tursiops truncatus	54.27	1.00e-101	363.00
IUUC-Vvi-131489	Vitis vinifera	47.67	0.00e+00	691.00
IUUC-Xtr-132915	Xenopus tropicalis	50.62	5.00e-95	341.00
IUUC-Xma-134133	Xiphophorus maculatus	50.86	2.00e-91	329.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence