iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Lch-049948

Ensembl Protein ID

ENSLACP00000006723.1

UniProt Accession

H3AAQ2; H3AAQ2_LATCH

Genbank Protein ID

ENSLACP00000006723

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

AFYH01172274

Gene Name

CHD4

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSLACG00000005963.1	ENSLACT00000006777.1	ENSLACP00000006723.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	2.50e-08	34.2	418	462

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 2    kvClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCr 52
           ++C vC++gge    l++C+ C + +H +Cl+++  +e pn+e w Cp+C+
   Q: 418  EFCRVCKDGGE----LLCCDTCPSSYHIHCLNPP-LPEIPNDE-WLCPRCT 462
           58*********....*******************.*******8.******6 PP

Organism

Latimeria chalumnae

Protein Sequence
(Fasta)

PPAVPDHEED LEEELSEAEA PKVKKKKKPR KPKELKPTKS KRQKKEDVCD SSGEGNDFAE 60
EEEERSDSEG SDYTPGKKKK KKLVQKKEKK AKPKREEEED EDEDDDSKEP KTSGQLLDDW 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCCCCCGCTG TTCCAGATCA TGAAGAGGAT TTGGAAGAGG AGTTATCAGA GGCTGAAGCC 60
CCAAAGGTGA AGAAGAAGAA GAAACCACGG AAACCAAAAG AGCTGAAACC CACCAAAAGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR028725--CHD4
IPR012958--CHD_N
IPR000953--Chromo/chromo_shadow_dom
IPR023780--Chromo_domain
IPR016197--Chromodomain-like
IPR002464--DNA/RNA_helicase_DEAH_CS
IPR009462--DUF1086
IPR009463--DUF1087
IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR009071--HMG_box_dom
IPR027417--P-loop_NTPase
IPR000330--SNF2_N
IPR019786--Zinc_finger_PHD-type_CS
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50013--CHROMO_2
PS00690--DEAH_ATP_HELICASE
PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF08073--CHDNT
PF00385--Chromo
PF06461--DUF1086
PF06465--DUF1087
PF00271--Helicase_C
PF00628--PHD
PF00176--SNF2_N

SMART

SM00298--CHROMO
SM00487--DEXDc
SM01146--DUF1086
SM01147--DUF1087
SM00490--HELICc
SM00249--PHD

Gene Ontology

GO:0016581--C:NuRD complex
GO:0005524--F:ATP binding
GO:0008026--F:ATP-dependent helicase activity
GO:0003677--F:DNA binding
GO:0008270--F:zinc ion binding
GO:0006325--P:chromatin organization
GO:0006355--P:regulation of transcription, DNA-templated
GO:0051225--P:spindle assembly

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001361	Ailuropoda melanoleuca	78.29	0.00e+00	1940.00
IUUC-Apl-004175	Anas platyrhynchos	84.17	0.00e+00	1836.00
IUUC-Aca-004774	Anolis carolinensis	80.03	0.00e+00	1851.00
IUUC-Ame-011098	Astyanax mexicanus	79.12	0.00e+00	1723.00
IUUC-Bta-013220	Bos taurus	81.08	0.00e+00	1919.00
IUUC-Cfa-020422	Canis familiaris	80.81	0.00e+00	1927.00
IUUC-Cpo-021704	Cavia porcellus	80.88	0.00e+00	1936.00
IUUC-Csa-023625	Chlorocebus sabaeus	81.12	0.00e+00	1932.00
IUUC-Cho-024361	Choloepus hoffmanni	80.95	0.00e+00	1256.00
IUUC-Dre-027505	Danio rerio	77.60	0.00e+00	1675.00
IUUC-Dno-029656	Dasypus novemcinctus	81.12	0.00e+00	1926.00
IUUC-Eca-034112	Equus caballus	80.81	0.00e+00	1926.00
IUUC-Fca-036056	Felis catus	80.81	0.00e+00	1926.00
IUUC-Fal-037312	Ficedula albicollis	84.89	0.00e+00	1813.00
IUUC-Gga-040216	Gallus gallus	80.80	0.00e+00	1844.00
IUUC-Ggo-044428	Gorilla gorilla	71.66	0.00e+00	1627.00
IUUC-Hsa-045908	Homo sapiens	79.45	0.00e+00	1938.00
IUUC-Itr-048002	Ictidomys tridecemlineatus	81.12	0.00e+00	1925.00
IUUC-Loc-052144	Lepisosteus oculatus	81.60	0.00e+00	1774.00
IUUC-Mcc-055773	Macaca mulatta	79.60	0.00e+00	1926.00
IUUC-Mga-059633	Meleagris gallopavo	80.69	0.00e+00	1848.00
IUUC-Mmr-060886	Microcebus murinus	79.52	0.00e+00	1930.00
IUUC-Mdo-062872	Monodelphis domestica	83.44	0.00e+00	1779.00
IUUC-Mmu-063672	Mus musculus	84.85	0.00e+00	1805.00
IUUC-Mpu-066692	Mustela putorius furo	80.74	0.00e+00	1926.00
IUUC-Mlu-067785	Myotis lucifugus	80.41	0.00e+00	1922.00
IUUC-Nle-070039	Nomascus leucogenys	79.20	0.00e+00	1915.00
IUUC-Ont-072418	Oreochromis niloticus	75.12	0.00e+00	1841.00
IUUC-Ocu-074177	Oryctolagus cuniculus	78.79	0.00e+00	1942.00
IUUC-Ola-086880	Oryzias latipes	73.05	0.00e+00	1873.00
IUUC-Oga-088970	Otolemur garnettii	79.53	0.00e+00	1919.00
IUUC-Oar-090422	Ovis aries	80.80	0.00e+00	1919.00
IUUC-Pan-092441	Papio anubis	81.12	0.00e+00	1932.00
IUUC-Psi-093530	Pelodiscus sinensis	83.26	0.00e+00	1848.00
IUUC-Ppa-095213	Physcomitrella patens	39.58	1.00e-178	621.00
IUUC-Pab-097959	Pongo abelii	78.45	0.00e+00	1881.00
IUUC-Pva-103186	Pteropus vampyrus	79.42	0.00e+00	1904.00
IUUC-Rno-105692	Rattus norvegicus	85.05	0.00e+00	1805.00
IUUC-Ssc-115295	Sus scrofa	80.81	0.00e+00	1924.00
IUUC-Tgu-117484	Taeniopygia guttata	84.09	0.00e+00	1835.00
IUUC-Tru-118745	Takifugu rubripes	70.67	0.00e+00	1861.00
IUUC-Tsy-119261	Tarsius syrichta	77.46	0.00e+00	1373.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence