iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-114389

UUCD1 version

UUC-SoB-00607

Ensembl Protein ID

Sb03g036400.1

UniProt Accession

A0A1B6Q6H2; A0A1B6Q6H2_SORBI

Genbank Protein ID

KXG33513.1

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Genbank Nucleotide ID

CM000762

Gene Name

SORBI_003G316700

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb03g036400	Sb03g036400.1	Sb03g036400.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.60e-35	120.3	185	220
UBD/Beta-Prp	4.10e-59	201.0	12	185

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvl 35
           H++ ++c++f +   ll++Gs D t+k WDl t+ l
   Q: 185  HSGQINCIDFhPQeFLLATGSADRTVKFWDLETFEL 220
           9*********9665889**************99876 PP

UBD/Beta-Prp

   S: 89   tlkghedsvlslsfsp.sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsv 183
            + +h+++v+sls+ + s+ ++++G++dr +++w + +++ l  tlsgh+++v  v++++ + l+ +Gs ++ ++lWdl+ +k++r l g h +s 
   Q: 12   NFVAHDAEVRSLSIGKkSSRVFITGGNDRKVNLWAIGKQTPLL-TLSGHTSAVEAVQFDSAEVLVLAGSSNGSIKLWDLEEAKVVRSLAG-HRSSC 105
           5678************666************************.********************************************99.***** PP
   S: 184  yslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlh 263
           + ++f++ g++++sgs d+++k+wd++++ c++t++gh+  +k +rf+p++ ++v+g++D  +++Wdl+ g+ll+ ++ h
   Q: 106  TAVEFHPFGEFFASGSSDTDLKIWDIKKKGCIHTYKGHRGAIKTIRFTPDGRWVVTGGEDSIVKVWDLTAGKLLHDFKFH 185
           **************************************************************************999765 PP

Organism

Sorghum bicolor

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MDPEKRGYEL QNFVAHDAEV RSLSIGKKSS RVFITGGNDR KVNLWAIGKQ TPLLTLSGHT 60
SAVEAVQFDS AEVLVLAGSS NGSIKLWDLE EAKVVRSLAG HRSSCTAVEF HPFGEFFASG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGACCCCG AGAAGCGCGG CTACGAGCTC CGTATCCTCT CACTCCGTCT TCGAGTTGCC 60
GGTGTGTTTC TTGATTCGAT TTGGCTCGCA GGAGGAAGAA GCAGCCGTCC CGTGAAGCAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000869	Aegilops tauschii	61.73	0.00e+00	1018.00
IUUC-Aml-002187	Ailuropoda melanoleuca	46.31	1.00e-91	329.00
IUUC-Atr-002899	Amborella trichopoda	42.91	0.00e+00	631.00
IUUC-Apl-003305	Anas platyrhynchos	46.10	9.00e-92	330.00
IUUC-Aca-004635	Anolis carolinensis	47.65	4.00e-85	308.00
IUUC-Aly-005897	Arabidopsis lyrata	69.54	2.00e-136	479.00
IUUC-Ath-006624	Arabidopsis thaliana	66.31	7.00e-149	521.00
IUUC-Bta-012527	Bos taurus	46.98	1.00e-94	340.00
IUUC-Bdi-014531	Brachypodium distachyon	71.21	0.00e+00	1177.00
IUUC-Bol-015355	Brassica oleracea	70.81	2.00e-145	509.00
IUUC-Bra-017265	Brassica rapa	69.05	2.00e-146	513.00
IUUC-Cja-019706	Callithrix jacchus	46.98	3.00e-94	338.00
IUUC-Cfa-020139	Canis familiaris	39.83	2.00e-84	305.00
IUUC-Cpo-021710	Cavia porcellus	47.32	2.00e-95	342.00
IUUC-Cre-022746	Chlamydomonas reinhardtii	40.18	5.00e-76	278.00
IUUC-Csa-023546	Chlorocebus sabaeus	48.26	4.00e-93	335.00
IUUC-Cin-025156	Ciona intestinalis	42.95	7.00e-80	290.00
IUUC-Csv-025962	Ciona savignyi	45.02	1.00e-79	288.00
IUUC-Dre-028215	Danio rerio	48.14	9.00e-95	340.00
IUUC-Dno-029314	Dasypus novemcinctus	46.64	5.00e-94	337.00
IUUC-Dor-030482	Dipodomys ordii	46.98	4.00e-95	341.00
IUUC-Dse-031558	Dothistroma septosporum	30.49	5.00e-28	118.00
IUUC-Dme-032188	Drosophila melanogaster	36.08	6.00e-56	211.00
IUUC-Eca-034143	Equus caballus	46.64	1.00e-91	330.00
IUUC-Fca-035924	Felis catus	46.64	2.00e-94	339.00
IUUC-Fal-037387	Ficedula albicollis	44.07	2.00e-95	342.00
IUUC-Gmo-038692	Gadus morhua	47.65	7.00e-94	337.00
IUUC-Gga-040597	Gallus gallus	44.79	1.00e-93	336.00
IUUC-Gac-042004	Gasterosteus aculeatus	47.12	3.00e-90	325.00
IUUC-Gma-044134	Glycine max	43.28	2.00e-170	591.00
IUUC-Ggo-044761	Gorilla gorilla	46.98	2.00e-94	338.00
IUUC-Hsa-045698	Homo sapiens	46.98	1.00e-94	339.00
IUUC-Hvu-047729	Hordeum vulgare	73.02	0.00e+00	897.00
IUUC-Itr-048697	Ictidomys tridecemlineatus	46.98	6.00e-95	340.00
IUUC-Lch-049674	Latimeria chalumnae	46.98	5.00e-94	338.00
IUUC-Lpe-051554	Leersia perrieri	66.77	2.00e-144	505.00
IUUC-Loc-052623	Lepisosteus oculatus	47.86	5.00e-91	328.00
IUUC-Laf-054587	Loxodonta africana	46.98	6.00e-95	340.00
IUUC-Mcc-055851	Macaca mulatta	46.98	2.00e-94	338.00
IUUC-Meu-056704	Macropus eugenii	46.98	3.00e-94	338.00
IUUC-Mtr-058053	Medicago truncatula	41.70	7.00e-170	590.00
IUUC-Mga-059608	Meleagris gallopavo	46.15	5.00e-93	334.00
IUUC-Mmr-061154	Microcebus murinus	46.98	2.00e-94	339.00
IUUC-Mdo-062365	Monodelphis domestica	46.64	3.00e-93	335.00
IUUC-Mmu-063754	Mus musculus	46.98	6.00e-95	340.00
IUUC-Mac-065245	Musa acuminata	52.33	7.00e-173	600.00
IUUC-Mpu-066245	Mustela putorius furo	46.64	2.00e-94	338.00
IUUC-Mlu-067692	Myotis lucifugus	46.98	2.00e-94	338.00
IUUC-Nle-070051	Nomascus leucogenys	46.64	3.00e-93	335.00
IUUC-Opr-070855	Ochotona princeps	46.98	2.00e-94	339.00
IUUC-Ont-071883	Oreochromis niloticus	45.42	5.00e-88	317.00
IUUC-Oan-073293	Ornithorhynchus anatinus	48.57	1.00e-92	333.00
IUUC-Ocu-074644	Oryctolagus cuniculus	46.98	5.00e-95	341.00
IUUC-Oba-075016	Oryza barthii	67.94	0.00e+00	1047.00
IUUC-Obr-076138	Oryza brachyantha	72.92	0.00e+00	1251.00
IUUC-Ogl-077401	Oryza glaberrima	72.50	0.00e+00	1244.00
IUUC-Ogu-078062	Oryza glumaepatula	68.00	0.00e+00	1166.00
IUUC-Oin-080042	Oryza indica	67.89	0.00e+00	1166.00
IUUC-Olo-080713	Oryza longistaminata	70.14	0.00e+00	1068.00
IUUC-Ome-081192	Oryza meridionalis	66.02	0.00e+00	991.00
IUUC-Oni-082473	Oryza nivara	67.82	0.00e+00	1157.00
IUUC-Opu-083293	Oryza punctata	64.46	0.00e+00	1066.00
IUUC-Oru-085183	Oryza rufipogon	67.67	0.00e+00	1162.00
IUUC-Osa-085801	Oryza sativa	72.50	0.00e+00	1248.00
IUUC-Ola-087483	Oryzias latipes	43.85	7.00e-86	310.00
IUUC-Oga-087964	Otolemur garnettii	46.98	1.00e-94	339.00
IUUC-Oar-089483	Ovis aries	46.64	1.00e-92	333.00
IUUC-Ptr-091387	Pan troglodytes	46.98	1.00e-94	339.00
IUUC-Pan-092623	Papio anubis	46.98	2.00e-94	338.00
IUUC-Psi-093830	Pelodiscus sinensis	48.57	7.00e-91	327.00
IUUC-Ppa-095379	Physcomitrella patens	67.67	3.00e-129	455.00
IUUC-Pfo-096755	Poecilia formosa	45.30	1.00e-87	316.00
IUUC-Pab-097564	Pongo abelii	46.98	5.00e-94	337.00
IUUC-Pop-100006	Populus trichocarpa	48.87	1.00e-151	530.00
IUUC-Pca-100357	Procavia capensis	50.25	2.00e-68	253.00
IUUC-Ppe-101237	Prunus persica	42.49	3.00e-177	614.00
IUUC-Pva-102397	Pteropus vampyrus	42.62	5.00e-82	298.00
IUUC-Pte-104275	Pyrenophora teres	32.33	3.00e-30	126.00
IUUC-Rno-105349	Rattus norvegicus	46.98	8.00e-95	340.00
IUUC-Smo-109409	Selaginella moellendorffii	65.13	2.00e-130	459.00
IUUC-Sit-110364	Setaria italica	81.04	0.00e+00	1293.00
IUUC-Sly-110991	Solanum lycopersicum	39.43	2.00e-159	555.00
IUUC-Stu-112053	Solanum tuberosum	40.34	2.00e-163	568.00
IUUC-Sar-112953	Sorex araneus	43.86	4.00e-57	214.00
IUUC-Ssc-115949	Sus scrofa	43.83	2.00e-46	179.00
IUUC-Tgu-117461	Taeniopygia guttata	45.21	3.00e-95	341.00
IUUC-Tru-117865	Takifugu rubripes	44.63	2.00e-84	305.00
IUUC-Tsy-119036	Tarsius syrichta	50.83	2.00e-34	139.00
IUUC-Tni-120903	Tetraodon nigroviridis	43.65	2.00e-83	302.00
IUUC-Tca-121185	Theobroma cacao	72.70	6.00e-144	504.00
IUUC-Tae-125511	Triticum aestivum	71.88	0.00e+00	1187.00
IUUC-Tur-126181	Triticum urartu	66.37	0.00e+00	1085.00
IUUC-Ttr-128172	Tursiops truncatus	46.98	1.00e-94	339.00
IUUC-Vvi-130939	Vitis vinifera	57.61	3.00e-146	510.00
IUUC-Xtr-132915	Xenopus tropicalis	40.16	7.00e-90	323.00
IUUC-Xma-134133	Xiphophorus maculatus	44.97	9.00e-86	310.00
IUUC-Zma-135921	Zea mays	84.74	0.00e+00	1417.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence