iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Loc-052144

Ensembl Protein ID

ENSLOCP00000009062.1

UniProt Accession

W5ML03; W5ML03_LEPOC

Genbank Protein ID

ENSLOCP00000009062

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

AHAT01034776

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSLOCG00000007438.1	ENSLOCT00000009073.1	ENSLOCP00000009062.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	9.60e-18	64.3	409	454

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 2    kvClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCrs 53
           ++C vC++gge    l++C+ C + +H +Cl+++  +e pn e w Cp+C+s
   Q: 409  EFCRVCKDGGE----LLCCDSCPSSYHIHCLNPP-LPEIPNGE-WLCPRCTS 454
           58*********....*******************.*******8.******85 PP

Organism

Lepisosteus oculatus

Protein Sequence
(Fasta)

MSGSEDEGQD FGSLDDRSLL QDNDDDLEEE LSDGDAPKVK KKKKAKKSRE SKTAKRQRQR 60
REDLASSSPE GADLGDGVGD DDEEGGGRSD SEGSDYTPGR KKKKRASAAK KEKRAAGGGS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCCGGGA GTGAAGACGA GGGACAGGAT TTCGGAAGCT TGGACGACCG CTCGCTTTTG 60
CAAGGTAACT GAAATATTTT GGCTGTACTC GCATGTCTAA CCTAACGCAG CACACGTGAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR028725--CHD4
IPR012957--CHD_C2
IPR012958--CHD_N
IPR000953--Chromo/chromo_shadow_dom
IPR023780--Chromo_domain
IPR016197--Chromodomain-like
IPR002464--DNA/RNA_helicase_DEAH_CS
IPR009462--DUF1086
IPR009463--DUF1087
IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR009071--HMG_box_dom
IPR027417--P-loop_NTPase
IPR000330--SNF2_N
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50013--CHROMO_2
PS00690--DEAH_ATP_HELICASE
PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF08074--CHDCT2
PF08073--CHDNT
PF00385--Chromo
PF06461--DUF1086
PF06465--DUF1087
PF00271--Helicase_C
PF00628--PHD
PF00176--SNF2_N

SMART

SM00298--CHROMO
SM00487--DEXDc
SM01146--DUF1086
SM01147--DUF1087
SM00490--HELICc
SM00249--PHD

Gene Ontology

GO:0016581--C:NuRD complex
GO:0005524--F:ATP binding
GO:0008026--F:ATP-dependent helicase activity
GO:0003677--F:DNA binding
GO:0008270--F:zinc ion binding
GO:0006325--P:chromatin organization
GO:0006355--P:regulation of transcription, DNA-templated
GO:0051225--P:spindle assembly

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Apl-004175	Anas platyrhynchos	85.32	0.00e+00	2063.00
IUUC-Aca-004774	Anolis carolinensis	82.61	0.00e+00	2133.00
IUUC-Ame-011098	Astyanax mexicanus	80.27	0.00e+00	2335.00
IUUC-Bta-013220	Bos taurus	82.21	0.00e+00	2091.00
IUUC-Cfa-020422	Canis familiaris	82.18	0.00e+00	2096.00
IUUC-Cpo-021704	Cavia porcellus	81.65	0.00e+00	2097.00
IUUC-Csa-023625	Chlorocebus sabaeus	82.46	0.00e+00	2101.00
IUUC-Cho-024361	Choloepus hoffmanni	83.67	0.00e+00	1354.00
IUUC-Dre-027505	Danio rerio	78.21	0.00e+00	2450.00
IUUC-Dno-029656	Dasypus novemcinctus	82.18	0.00e+00	2095.00
IUUC-Fca-036056	Felis catus	81.98	0.00e+00	2095.00
IUUC-Fal-037312	Ficedula albicollis	85.46	0.00e+00	2114.00
IUUC-Gac-042478	Gasterosteus aculeatus	84.36	0.00e+00	2002.00
IUUC-Itr-048002	Ictidomys tridecemlineatus	81.98	0.00e+00	2095.00
IUUC-Lch-049948	Latimeria chalumnae	73.55	0.00e+00	1831.00
IUUC-Mga-059633	Meleagris gallopavo	76.75	0.00e+00	2394.00
IUUC-Mdo-062872	Monodelphis domestica	86.18	0.00e+00	1927.00
IUUC-Mmu-063672	Mus musculus	86.97	0.00e+00	1975.00
IUUC-Mpu-066692	Mustela putorius furo	81.98	0.00e+00	2095.00
IUUC-Mlu-067785	Myotis lucifugus	82.12	0.00e+00	2092.00
IUUC-Ont-072418	Oreochromis niloticus	82.52	0.00e+00	2182.00
IUUC-Ocu-074177	Oryctolagus cuniculus	82.30	0.00e+00	2108.00
IUUC-Ola-086880	Oryzias latipes	84.11	0.00e+00	2243.00
IUUC-Oar-090422	Ovis aries	82.00	0.00e+00	2090.00
IUUC-Pan-092441	Papio anubis	82.46	0.00e+00	2100.00
IUUC-Psi-093530	Pelodiscus sinensis	83.96	0.00e+00	2117.00
IUUC-Ppa-095213	Physcomitrella patens	41.77	0.00e+00	710.00
IUUC-Pfo-097530	Poecilia formosa	83.92	0.00e+00	2183.00
IUUC-Pva-103186	Pteropus vampyrus	80.88	0.00e+00	2076.00
IUUC-Rno-105692	Rattus norvegicus	86.97	0.00e+00	1975.00
IUUC-Ssc-115295	Sus scrofa	81.98	0.00e+00	2093.00
IUUC-Tru-118745	Takifugu rubripes	83.63	0.00e+00	2189.00
IUUC-Tsy-119261	Tarsius syrichta	79.86	0.00e+00	1459.00
IUUC-Tni-120764	Tetraodon nigroviridis	75.44	0.00e+00	2412.00
IUUC-Ttr-128478	Tursiops truncatus	78.46	0.00e+00	2059.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence