iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Lpe-051639

Ensembl Protein ID

LPERR08G06520.1

UniProt Accession

A0A0D9X5Q8; A0A0D9X5Q8_9ORYZ

Protein Name

RNA polymerase sigma factor

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
LPERR08G06520	LPERR08G06520.1	LPERR08G06520.1
LPERR08G06520	LPERR08G06520.2	LPERR08G06520.2

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 adaptor/Cullin RING/ECS/SOCS_VHL_BC-box	32.31	8.60e-01	33.50	IUUC-Hsa-045805

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Leersia perrieri

Functional Description
(View)

Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released.

Protein Sequence
(Fasta)

MNSGGRSLLS SPLFTSSSPA FRSASAAAAA AIASSPSSSR ATVIPMLAHD NAGGGRGAST 60
ACHYSPSLVA EEQIHGRSKD TGGSLMGEKA LLELLLDMAL EQHAQGKKLP VPGEESEDSE 120

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Nucleotide Sequence
(Fasta)

ATGAATTCCG GCGGGCGGAG CCTCCTCTCG TCGCCGCTCT TCACCAGCTC CTCCCCGGCC 60
TTCCGCAGCG CCAGCGCCGC CGCCGCCGCC GCTATCGCGT CCTCCCCTTC CTCCTCCCGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0150--Chloroplast
KW-0181--Complete proteome
KW-0238--DNA-binding
KW-0934--Plastid
KW-1185--Reference proteome
KW-0731--Sigma factor
KW-0804--Transcription
KW-0805--Transcription regulation

Interpro

IPR014284--RNA_pol_sigma-70_dom
IPR000943--RNA_pol_sigma70
IPR007627--RNA_pol_sigma70_r2
IPR007624--RNA_pol_sigma70_r3
IPR007630--RNA_pol_sigma70_r4
IPR013325--RNA_pol_sigma_r2
IPR013324--RNA_pol_sigma_r3_r4
IPR016262--RNA_pol_sigma_SigB/C/D/F
IPR011991--WHTH_DNA-bd_dom

Pfam

PF04542--Sigma70_r2
PF04539--Sigma70_r3
PF04545--Sigma70_r4

PRINTS

PR00046--SIGMA70FCT

Gene Ontology

GO:0009507--C:chloroplast
GO:0003677--F:DNA binding
GO:0001053--F:plastid sigma factor activity
GO:0003700--F:transcription factor activity, sequence-specific DNA binding
GO:0071483--P:cellular response to blue light
GO:0006352--P:DNA-templated transcription, initiation
GO:0045893--P:positive regulation of transcription, DNA-templated
GO:0090351--P:seedling development

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Apl-003815	Anas platyrhynchos	29.23	1.80e-01	30.40
IUUC-Ame-010677	Astyanax mexicanus	23.26	1.80e+00	26.90
IUUC-Bta-012338	Bos taurus	32.31	2.00e-02	33.50
IUUC-Cja-019828	Callithrix jacchus	32.31	1.60e-02	33.90
IUUC-Cfa-020369	Canis familiaris	27.97	6.30e-02	32.00
IUUC-Cpo-021397	Cavia porcellus	29.23	5.50e-01	28.50
IUUC-Csa-023856	Chlorocebus sabaeus	32.31	2.10e-02	33.50
IUUC-Dno-029019	Dasypus novemcinctus	32.31	2.20e-02	33.50
IUUC-Eca-033867	Equus caballus	32.31	2.00e-02	33.50
IUUC-Fca-035806	Felis catus	32.31	1.70e-02	33.50
IUUC-Fal-037117	Ficedula albicollis	29.23	1.30e-01	30.80
IUUC-Gga-040876	Gallus gallus	29.23	1.40e-01	30.40
IUUC-Ggo-045169	Gorilla gorilla	32.31	2.10e-02	33.50
IUUC-Hsa-045805	Homo sapiens	32.31	2.00e-02	33.50
IUUC-Itr-049048	Ictidomys tridecemlineatus	29.23	1.50e-01	30.40
IUUC-Laf-054124	Loxodonta africana	32.31	6.70e-02	31.60
IUUC-Mcc-055175	Macaca mulatta	32.31	2.10e-02	33.50
IUUC-Meu-056557	Macropus eugenii	29.23	2.00e-01	30.00
IUUC-Mga-059214	Meleagris gallopavo	29.23	1.60e-01	30.40
IUUC-Mvi-060532	Microbotryum violaceum	28.40	2.10e-01	30.00
IUUC-Mdo-062788	Monodelphis domestica	29.23	5.00e-01	28.90
IUUC-Mmu-064333	Mus musculus	30.77	2.30e-01	30.00
IUUC-Mpu-066048	Mustela putorius furo	29.23	4.90e-01	28.90
IUUC-Mlu-067430	Myotis lucifugus	30.77	4.50e-02	32.30
IUUC-Nle-069086	Nomascus leucogenys	32.31	2.00e-02	33.50
IUUC-Opr-070312	Ochotona princeps	30.70	6.30e-02	32.00
IUUC-Ocu-074123	Oryctolagus cuniculus	34.43	1.20e-01	30.80
IUUC-Oga-088535	Otolemur garnettii	32.31	2.10e-02	33.50
IUUC-Oar-089875	Ovis aries	32.31	2.20e-02	33.10
IUUC-Ptr-090541	Pan troglodytes	32.31	2.00e-02	33.50
IUUC-Pan-091840	Papio anubis	32.31	2.10e-02	33.50
IUUC-Psi-092960	Pelodiscus sinensis	29.23	6.60e-02	31.60
IUUC-Pab-098659	Pongo abelii	32.31	2.00e-02	33.50
IUUC-Pca-100222	Procavia capensis	30.77	1.20e+00	27.70
IUUC-Pva-102387	Pteropus vampyrus	32.31	2.10e-02	33.50
IUUC-Rno-105698	Rattus norvegicus	30.77	1.90e-01	30.00
IUUC-Sha-107234	Sarcophilus harrisii	32.31	2.10e-01	30.00
IUUC-Ssc-115985	Sus scrofa	32.31	4.10e-02	32.30
IUUC-Tgu-116676	Taeniopygia guttata	29.23	1.40e-01	30.80
IUUC-Tsy-119163	Tarsius syrichta	32.31	1.40e-02	33.90
IUUC-Tbe-127353	Tupaia belangeri	32.31	2.10e-02	33.50
IUUC-Ttr-128907	Tursiops truncatus	32.31	1.90e-02	33.50
IUUC-Vpa-130140	Vicugna pacos	32.31	2.40e-02	33.10

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence